Gchil3846.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3846.t1
Unique NameGchil3846.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length584
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:910085..911836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6326.BUX.s01038.158
PFAMsrve,zf-H2C2
Max annot lvl33208|Metazoa
Evalue3.32e-32
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3A25R@33154|Opisthokonta,3BQ0A@33208|Metazoa,3E4KA@33213|Bilateria,40QVF@6231|Nematoda,1M0JP@119089|Chromadorea
DescriptionIntegrase core domain
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3846Gchil3846Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 910085..911836 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3846.t1.stop1Gchil3846.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 910085..910087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3846.t1.CDS1Gchil3846.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 910085..911836 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3846.t1.exon1Gchil3846.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 910085..911836 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3846.t1.start1Gchil3846.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 911834..911836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3846.t1Gchil3846.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 910085..911836 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3846.t1 ID=Gchil3846.t1|Name=Gchil3846.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=584bp
MTLFQAKAPLQYVSIDILRKLIRSRRCYRYLLVITDRFSKLVRTVPLKRI
TATVIAQAFVKHWVFIYGPPEVLLSYNGKQFVAKFFQNVCRIMGIRNVFT
TTYHPRCNGQVVRLNRTLIAALRHYIADHPKEWDMFTDSLCYAYNTQVHT
STKTAPFDLVLSRNPPALPVALYGETELDALTPAKYHLKWRNDLKAIEEE
AAKELSKTQARYKRNYDSRRRRGNPAIRVGGHVFVRVERPDKQEDSLHKL
LPIAAGPFKVVELDEDTVVIKTGENVERVSRDRVEVAPDPQVEVQVSGRT
KEGSATERQGKSPSDSGESEPPPIARAEEKAPDLPPPAVAYVNHEQLPKY
RDMPRGTRTPVNTEMEPESRKDVLEFGPKGFGPSARENAPLPLQSEPSGE
APLAVPLISAPIPRGQEEEEVPPPVVVQAPSSTQQRSESDKPKEVHPRME
LRSSKKYASIEPRKQDSSLSEKGSQGMSTLPLREERQLVDDQTLSNAETA
NTETLGSALRHFKPVNRSLATTAKALGNAQEYVMDRICEHGEHEDTRELL
YRVRWYGFPPEADTWEPLAHILRSQLVRNHRHM*
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spliced messenger RNA

>Gchil3846.t1 ID=Gchil3846.t1|Name=Gchil3846.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1752bp|location=Sequence derived from alignment at tig00000010_pilon:910085..911836- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTATTCCAGGCGAAAGCGCCTTTACAATACGTCAGTATCGACAT
CCTAAGAAAATTGATTCGCTCAAGGCGATGTTATCGCTACCTATTGGTAA
TCACCGACCGCTTCTCGAAGCTAGTGCGGACTGTGCCGCTGAAGCGGATA
ACCGCAACCGTAATCGCACAGGCGTTTGTCAAACACTGGGTATTTATATA
CGGACCACCAGAAGTTCTGTTATCATATAATGGGAAGCAATTCGTTGCCA
AGTTCTTTCAGAATGTTTGCCGCATTATGGGCATTCGAAACGTTTTTACC
ACGACCTATCATCCGCGGTGCAACGGTCAGGTGGTGCGTTTAAACCGCAC
GCTGATAGCAGCATTACGACACTACATCGCGGACCACCCGAAAGAATGGG
ACATGTTTACAGATAGTCTGTGCTACGCGTACAATACGCAAGTGCATACC
TCTACAAAGACGGCACCGTTCGACCTCGTGCTCTCACGTAACCCTCCGGC
TTTACCGGTTGCGCTTTACGGCGAGACAGAATTGGACGCGCTGACCCCGG
CTAAGTACCATCTGAAATGGAGGAATGACCTTAAGGCCATAGAGGAAGAA
GCCGCTAAGGAGTTATCAAAGACGCAAGCTCGCTATAAGCGAAACTATGA
CTCCAGAAGACGAAGAGGAAATCCGGCAATCCGAGTAGGAGGTCACGTCT
TCGTACGAGTCGAAAGACCTGACAAACAAGAAGACTCTCTTCATAAGTTG
TTGCCGATAGCGGCTGGACCCTTCAAAGTGGTGGAACTTGATGAAGACAC
AGTGGTCATCAAGACAGGTGAAAACGTTGAACGTGTATCGCGCGATCGCG
TTGAAGTTGCGCCTGACCCGCAAGTGGAAGTCCAGGTATCTGGTAGAACT
AAGGAGGGAAGTGCGACGGAACGTCAAGGCAAAAGCCCAAGTGACTCTGG
GGAGAGTGAACCGCCACCAATAGCTCGAGCGGAGGAGAAAGCTCCTGATC
TCCCACCGCCGGCGGTTGCGTACGTCAATCACGAACAGCTTCCGAAATAT
CGGGATATGCCTCGTGGCACTCGCACACCCGTAAATACAGAAATGGAACC
TGAAAGCAGGAAAGATGTTTTGGAATTTGGCCCGAAGGGCTTTGGACCGA
GTGCACGCGAAAACGCGCCGTTGCCGCTTCAATCTGAACCGTCAGGTGAA
GCGCCACTCGCTGTTCCGCTGATATCGGCTCCCATCCCTCGTGGGCAGGA
AGAAGAAGAGGTACCGCCTCCTGTCGTGGTGCAAGCACCATCGTCCACCC
AACAGCGGTCAGAATCGGATAAACCGAAGGAAGTTCATCCACGAATGGAA
TTGAGAAGTAGCAAGAAGTACGCTTCTATAGAACCTAGAAAACAGGATAG
CTCTTTATCTGAGAAAGGTTCTCAAGGAATGAGTACACTGCCCCTGCGGG
AAGAACGACAGTTAGTCGACGATCAAACGCTTAGCAACGCTGAGACTGCT
AACACAGAGACGCTTGGGTCAGCCCTAAGGCATTTCAAACCTGTTAACAG
GAGTCTCGCGACAACAGCAAAAGCATTGGGAAACGCCCAGGAATATGTTA
TGGATCGCATATGTGAACATGGAGAGCATGAAGATACTAGAGAACTACTG
TATCGAGTCCGTTGGTACGGTTTTCCTCCGGAAGCGGATACTTGGGAACC
TTTAGCCCATATCCTCCGTTCGCAGCTCGTGCGAAATCATCGACACATGT
GA
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protein sequence of Gchil3846.t1

>Gchil3846.t1 ID=Gchil3846.t1|Name=Gchil3846.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=584bp
MTLFQAKAPLQYVSIDILRKLIRSRRCYRYLLVITDRFSKLVRTVPLKRI
TATVIAQAFVKHWVFIYGPPEVLLSYNGKQFVAKFFQNVCRIMGIRNVFT
TTYHPRCNGQVVRLNRTLIAALRHYIADHPKEWDMFTDSLCYAYNTQVHT
STKTAPFDLVLSRNPPALPVALYGETELDALTPAKYHLKWRNDLKAIEEE
AAKELSKTQARYKRNYDSRRRRGNPAIRVGGHVFVRVERPDKQEDSLHKL
LPIAAGPFKVVELDEDTVVIKTGENVERVSRDRVEVAPDPQVEVQVSGRT
KEGSATERQGKSPSDSGESEPPPIARAEEKAPDLPPPAVAYVNHEQLPKY
RDMPRGTRTPVNTEMEPESRKDVLEFGPKGFGPSARENAPLPLQSEPSGE
APLAVPLISAPIPRGQEEEEVPPPVVVQAPSSTQQRSESDKPKEVHPRME
LRSSKKYASIEPRKQDSSLSEKGSQGMSTLPLREERQLVDDQTLSNAETA
NTETLGSALRHFKPVNRSLATTAKALGNAQEYVMDRICEHGEHEDTRELL
YRVRWYGFPPEADTWEPLAHILRSQLVRNHRHM*
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mRNA from alignment at tig00000010_pilon:910085..911836-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3846.t1 ID=Gchil3846.t1|Name=Gchil3846.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1752bp|location=Sequence derived from alignment at tig00000010_pilon:910085..911836- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTTATTCCAGGCGAAAGCGCCTTTACAATACGTCAGTATCGACAT
CCTAAGAAAATTGATTCGCTCAAGGCGATGTTATCGCTACCTATTGGTAA
TCACCGACCGCTTCTCGAAGCTAGTGCGGACTGTGCCGCTGAAGCGGATA
ACCGCAACCGTAATCGCACAGGCGTTTGTCAAACACTGGGTATTTATATA
CGGACCACCAGAAGTTCTGTTATCATATAATGGGAAGCAATTCGTTGCCA
AGTTCTTTCAGAATGTTTGCCGCATTATGGGCATTCGAAACGTTTTTACC
ACGACCTATCATCCGCGGTGCAACGGTCAGGTGGTGCGTTTAAACCGCAC
GCTGATAGCAGCATTACGACACTACATCGCGGACCACCCGAAAGAATGGG
ACATGTTTACAGATAGTCTGTGCTACGCGTACAATACGCAAGTGCATACC
TCTACAAAGACGGCACCGTTCGACCTCGTGCTCTCACGTAACCCTCCGGC
TTTACCGGTTGCGCTTTACGGCGAGACAGAATTGGACGCGCTGACCCCGG
CTAAGTACCATCTGAAATGGAGGAATGACCTTAAGGCCATAGAGGAAGAA
GCCGCTAAGGAGTTATCAAAGACGCAAGCTCGCTATAAGCGAAACTATGA
CTCCAGAAGACGAAGAGGAAATCCGGCAATCCGAGTAGGAGGTCACGTCT
TCGTACGAGTCGAAAGACCTGACAAACAAGAAGACTCTCTTCATAAGTTG
TTGCCGATAGCGGCTGGACCCTTCAAAGTGGTGGAACTTGATGAAGACAC
AGTGGTCATCAAGACAGGTGAAAACGTTGAACGTGTATCGCGCGATCGCG
TTGAAGTTGCGCCTGACCCGCAAGTGGAAGTCCAGGTATCTGGTAGAACT
AAGGAGGGAAGTGCGACGGAACGTCAAGGCAAAAGCCCAAGTGACTCTGG
GGAGAGTGAACCGCCACCAATAGCTCGAGCGGAGGAGAAAGCTCCTGATC
TCCCACCGCCGGCGGTTGCGTACGTCAATCACGAACAGCTTCCGAAATAT
CGGGATATGCCTCGTGGCACTCGCACACCCGTAAATACAGAAATGGAACC
TGAAAGCAGGAAAGATGTTTTGGAATTTGGCCCGAAGGGCTTTGGACCGA
GTGCACGCGAAAACGCGCCGTTGCCGCTTCAATCTGAACCGTCAGGTGAA
GCGCCACTCGCTGTTCCGCTGATATCGGCTCCCATCCCTCGTGGGCAGGA
AGAAGAAGAGGTACCGCCTCCTGTCGTGGTGCAAGCACCATCGTCCACCC
AACAGCGGTCAGAATCGGATAAACCGAAGGAAGTTCATCCACGAATGGAA
TTGAGAAGTAGCAAGAAGTACGCTTCTATAGAACCTAGAAAACAGGATAG
CTCTTTATCTGAGAAAGGTTCTCAAGGAATGAGTACACTGCCCCTGCGGG
AAGAACGACAGTTAGTCGACGATCAAACGCTTAGCAACGCTGAGACTGCT
AACACAGAGACGCTTGGGTCAGCCCTAAGGCATTTCAAACCTGTTAACAG
GAGTCTCGCGACAACAGCAAAAGCATTGGGAAACGCCCAGGAATATGTTA
TGGATCGCATATGTGAACATGGAGAGCATGAAGATACTAGAGAACTACTG
TATCGAGTCCGTTGGTACGGTTTTCCTCCGGAAGCGGATACTTGGGAACC
TTTAGCCCATATCCTCCGTTCGCAGCTCGTGCGAAATCATCGACACATGT
GA
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Coding sequence (CDS) from alignment at tig00000010_pilon:910085..911836-

>Gchil3846.t1 ID=Gchil3846.t1|Name=Gchil3846.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1752bp|location=Sequence derived from alignment at tig00000010_pilon:910085..911836- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTTATTCCAGGCGAAAGCGCCTTTACAATACGTCAGTATCGACAT
CCTAAGAAAATTGATTCGCTCAAGGCGATGTTATCGCTACCTATTGGTAA
TCACCGACCGCTTCTCGAAGCTAGTGCGGACTGTGCCGCTGAAGCGGATA
ACCGCAACCGTAATCGCACAGGCGTTTGTCAAACACTGGGTATTTATATA
CGGACCACCAGAAGTTCTGTTATCATATAATGGGAAGCAATTCGTTGCCA
AGTTCTTTCAGAATGTTTGCCGCATTATGGGCATTCGAAACGTTTTTACC
ACGACCTATCATCCGCGGTGCAACGGTCAGGTGGTGCGTTTAAACCGCAC
GCTGATAGCAGCATTACGACACTACATCGCGGACCACCCGAAAGAATGGG
ACATGTTTACAGATAGTCTGTGCTACGCGTACAATACGCAAGTGCATACC
TCTACAAAGACGGCACCGTTCGACCTCGTGCTCTCACGTAACCCTCCGGC
TTTACCGGTTGCGCTTTACGGCGAGACAGAATTGGACGCGCTGACCCCGG
CTAAGTACCATCTGAAATGGAGGAATGACCTTAAGGCCATAGAGGAAGAA
GCCGCTAAGGAGTTATCAAAGACGCAAGCTCGCTATAAGCGAAACTATGA
CTCCAGAAGACGAAGAGGAAATCCGGCAATCCGAGTAGGAGGTCACGTCT
TCGTACGAGTCGAAAGACCTGACAAACAAGAAGACTCTCTTCATAAGTTG
TTGCCGATAGCGGCTGGACCCTTCAAAGTGGTGGAACTTGATGAAGACAC
AGTGGTCATCAAGACAGGTGAAAACGTTGAACGTGTATCGCGCGATCGCG
TTGAAGTTGCGCCTGACCCGCAAGTGGAAGTCCAGGTATCTGGTAGAACT
AAGGAGGGAAGTGCGACGGAACGTCAAGGCAAAAGCCCAAGTGACTCTGG
GGAGAGTGAACCGCCACCAATAGCTCGAGCGGAGGAGAAAGCTCCTGATC
TCCCACCGCCGGCGGTTGCGTACGTCAATCACGAACAGCTTCCGAAATAT
CGGGATATGCCTCGTGGCACTCGCACACCCGTAAATACAGAAATGGAACC
TGAAAGCAGGAAAGATGTTTTGGAATTTGGCCCGAAGGGCTTTGGACCGA
GTGCACGCGAAAACGCGCCGTTGCCGCTTCAATCTGAACCGTCAGGTGAA
GCGCCACTCGCTGTTCCGCTGATATCGGCTCCCATCCCTCGTGGGCAGGA
AGAAGAAGAGGTACCGCCTCCTGTCGTGGTGCAAGCACCATCGTCCACCC
AACAGCGGTCAGAATCGGATAAACCGAAGGAAGTTCATCCACGAATGGAA
TTGAGAAGTAGCAAGAAGTACGCTTCTATAGAACCTAGAAAACAGGATAG
CTCTTTATCTGAGAAAGGTTCTCAAGGAATGAGTACACTGCCCCTGCGGG
AAGAACGACAGTTAGTCGACGATCAAACGCTTAGCAACGCTGAGACTGCT
AACACAGAGACGCTTGGGTCAGCCCTAAGGCATTTCAAACCTGTTAACAG
GAGTCTCGCGACAACAGCAAAAGCATTGGGAAACGCCCAGGAATATGTTA
TGGATCGCATATGTGAACATGGAGAGCATGAAGATACTAGAGAACTACTG
TATCGAGTCCGTTGGTACGGTTTTCCTCCGGAAGCGGATACTTGGGAACC
TTTAGCCCATATCCTCCGTTCGCAGCTCGTGCGAAATCATCGACACATGT
GA
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