Gchil6504.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6504.t1
Unique Name	Gchil6504.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	717

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:187307..189457 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	35128.Thaps269163
PFAMs	Hydrolase_4
Max annot lvl	2836\|Bacillariophyta
Evalue	9.34e-51
EggNOG OGs	COG1073@1\|root,KOG1552@2759\|Eukaryota,2XA7B@2836\|Bacillariophyta
Description	Serine aminopeptidase, S33
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6504	Gchil6504	Gracilaria chilensis NLEC103_M9 male	gene	tig00004390_pilon 187307..189457 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6504.t1.stop1	Gchil6504.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004390_pilon 187307..187309 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6504.t1.CDS1	Gchil6504.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004390_pilon 187307..189457 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6504.t1.exon1	Gchil6504.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004390_pilon 187307..189457 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6504.t1.start1	Gchil6504.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004390_pilon 189455..189457 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6504.t1	Gchil6504.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004390_pilon 187307..189457 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004390_pilon:187307..189457-
coding sequence from alignment at tig00004390_pilon:187307..189457-

mRNA sequence

>Gchil6504.t1 ID=Gchil6504.t1|Name=Gchil6504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=717bp
MSDAVDPLSSAGMSELANFVIRPPRAHYSRAELGDRDFVVDGVPAHRVDS
HLINRRGLALQVSRYTPAHLSEEAPTVVYLHGNGSCRAEAAMLLPVIIPY
GFSLLAFDFSGSGRSEGEYISLGVWERYDVATVVEHLVSVGVQSIVLWGH
SMGAATALMYSGLEERSNCVKGLILDSPFSSFEKLAHFLVSEMRLPLAIS
RKLILSVGIRAVRKIVRERADFDVLDIDPLSATKNIPSTLPAIFMHGTSD
AVVPFSHGQALFKHYPCPDKTWIPLEAFEHDTPRPESCMDRAHVFLQRVL
PDFAPGSPPHMEILKARGNSAMLSGRFADSIYVYTEALNALSQSLTDTPF
AKAVGEPFTPTIHDALPSRRNSSIVTLLHSMKWRSRDDPSRARVPIRRAS
DELHKSYENTLADDTSQPNTIPECLRSDSAAWSGRFVRQKSFSAKGVLQN
IKHRVRTGRSWKGEPTEAETEQSTSNAAEPDETSSCPDIANSPTRPQTRR
LSRTERSSARIRLRSTTKPERRQSQQTHSNVKERPMDNLEELRNSSTTIS
CFGRGFHRSDKRRKYLLRRTKQGSNVARREGYGIVGLGISDWDMNSEIKA
LTLALLGNRSLARRRVGDIQGSLFDAVTSLQLDPSWIRGYLRKAAALRED
GRFEQARNVIMEGLKQDSNHAGLMDMLRSIEEVVETEQMGAEENKTDAKV
RDCDTQSSPSAVAGSC*

spliced messenger RNA

>Gchil6504.t1 ID=Gchil6504.t1|Name=Gchil6504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2151bp|location=Sequence derived from alignment at tig00004390_pilon:187307..189457- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGACGCCGTGGACCCGCTCTCTTCCGCCGGAATGTCAGAGCTTGC
TAACTTCGTCATCCGTCCCCCCCGAGCTCACTACTCACGCGCAGAGCTTG
GTGACCGCGATTTCGTAGTGGATGGTGTGCCTGCCCATCGCGTCGACTCA
CACTTGATCAATCGGCGTGGACTTGCGTTGCAGGTGTCTCGATATACCCC
CGCCCATCTGTCCGAAGAGGCACCTACCGTAGTGTATCTTCACGGCAACG
GCTCATGCAGGGCTGAAGCTGCCATGCTTCTTCCAGTCATCATCCCGTAT
GGGTTTTCGTTGCTTGCATTCGACTTCTCGGGTAGTGGAAGGAGCGAGGG
CGAATACATCTCGCTGGGTGTATGGGAGCGATACGATGTTGCAACTGTCG
TCGAACATCTTGTTTCCGTTGGTGTTCAATCCATTGTGCTCTGGGGTCAC
AGTATGGGTGCTGCTACCGCCCTCATGTACTCCGGATTAGAAGAGCGCTC
CAATTGCGTCAAGGGGCTCATTCTGGACTCTCCTTTCTCCAGTTTTGAGA
AGCTTGCTCACTTTTTGGTCTCCGAAATGCGCCTACCCCTCGCTATCTCG
CGCAAGCTCATACTGTCCGTGGGAATCCGCGCTGTCAGAAAGATTGTTCG
AGAACGAGCCGATTTCGATGTTTTGGACATCGACCCACTCTCGGCAACAA
AGAACATACCCTCCACGCTCCCCGCAATTTTCATGCATGGTACTTCGGAT
GCAGTCGTCCCATTTTCACATGGCCAGGCACTTTTCAAGCATTATCCCTG
TCCTGACAAGACTTGGATTCCTCTTGAGGCATTCGAACACGATACGCCGC
GTCCGGAATCCTGCATGGACCGCGCACATGTTTTTCTCCAACGCGTACTT
CCCGATTTTGCACCAGGATCCCCGCCACACATGGAAATCCTGAAGGCGCG
TGGAAATTCTGCCATGCTGTCTGGGCGTTTTGCTGACTCTATATATGTGT
ACACCGAAGCGTTAAATGCGCTTTCTCAGAGTCTAACCGACACACCGTTT
GCCAAGGCAGTTGGTGAGCCCTTTACACCGACAATCCATGATGCCTTGCC
ATCACGGCGCAATTCCTCAATTGTGACTCTGCTCCATTCGATGAAATGGC
GCTCACGAGATGACCCCTCTCGCGCTCGCGTACCGATACGGCGAGCATCC
GATGAACTTCACAAGTCCTATGAGAATACTTTGGCAGACGATACATCCCA
ACCAAACACCATCCCCGAATGCTTACGAAGCGATAGTGCGGCATGGAGCG
GCCGTTTTGTCAGGCAGAAATCTTTCTCGGCGAAAGGTGTGCTTCAAAAT
ATTAAGCATCGAGTGCGAACTGGACGTAGCTGGAAAGGAGAACCGACCGA
GGCTGAGACGGAACAGTCTACCTCAAATGCTGCAGAGCCAGATGAAACTT
CGTCATGTCCGGACATTGCGAACTCACCAACGAGACCCCAAACCAGAAGA
CTAAGTAGAACTGAGCGTTCTTCTGCCCGTATTCGTCTGCGTAGTACAAC
TAAGCCCGAACGTCGCCAATCTCAACAGACTCATTCCAACGTCAAAGAAA
GACCGATGGACAACCTCGAAGAACTGAGGAACAGTTCAACAACTATTTCA
TGTTTTGGTAGGGGCTTCCACAGATCTGACAAACGTCGAAAGTATCTACT
ACGGCGCACAAAACAAGGTTCTAATGTTGCAAGGAGAGAGGGATACGGTA
TTGTGGGCTTGGGTATATCAGATTGGGATATGAATTCTGAAATCAAGGCT
CTTACCCTCGCATTGCTTGGAAACCGCAGCTTAGCGCGACGAAGGGTAGG
AGACATTCAAGGTTCATTGTTTGATGCGGTTACGAGTCTGCAGCTTGACC
CGTCATGGATTAGAGGGTATCTCAGAAAAGCCGCAGCGCTGAGAGAAGAT
GGGCGGTTCGAACAGGCACGGAACGTAATAATGGAAGGGCTGAAACAAGA
CTCTAATCACGCTGGTTTGATGGATATGTTGCGAAGCATTGAGGAAGTTG
TGGAAACAGAACAGATGGGCGCTGAGGAAAACAAGACCGATGCTAAAGTG
CGTGATTGTGATACTCAGTCATCACCAAGTGCAGTGGCTGGATCTTGTTG
A

protein sequence of Gchil6504.t1

>Gchil6504.t1 ID=Gchil6504.t1|Name=Gchil6504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=717bp
MSDAVDPLSSAGMSELANFVIRPPRAHYSRAELGDRDFVVDGVPAHRVDS
HLINRRGLALQVSRYTPAHLSEEAPTVVYLHGNGSCRAEAAMLLPVIIPY
GFSLLAFDFSGSGRSEGEYISLGVWERYDVATVVEHLVSVGVQSIVLWGH
SMGAATALMYSGLEERSNCVKGLILDSPFSSFEKLAHFLVSEMRLPLAIS
RKLILSVGIRAVRKIVRERADFDVLDIDPLSATKNIPSTLPAIFMHGTSD
AVVPFSHGQALFKHYPCPDKTWIPLEAFEHDTPRPESCMDRAHVFLQRVL
PDFAPGSPPHMEILKARGNSAMLSGRFADSIYVYTEALNALSQSLTDTPF
AKAVGEPFTPTIHDALPSRRNSSIVTLLHSMKWRSRDDPSRARVPIRRAS
DELHKSYENTLADDTSQPNTIPECLRSDSAAWSGRFVRQKSFSAKGVLQN
IKHRVRTGRSWKGEPTEAETEQSTSNAAEPDETSSCPDIANSPTRPQTRR
LSRTERSSARIRLRSTTKPERRQSQQTHSNVKERPMDNLEELRNSSTTIS
CFGRGFHRSDKRRKYLLRRTKQGSNVARREGYGIVGLGISDWDMNSEIKA
LTLALLGNRSLARRRVGDIQGSLFDAVTSLQLDPSWIRGYLRKAAALRED
GRFEQARNVIMEGLKQDSNHAGLMDMLRSIEEVVETEQMGAEENKTDAKV
RDCDTQSSPSAVAGSC*

mRNA from alignment at tig00004390_pilon:187307..189457-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6504.t1 ID=Gchil6504.t1|Name=Gchil6504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2151bp|location=Sequence derived from alignment at tig00004390_pilon:187307..189457- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGACGCCGTGGACCCGCTCTCTTCCGCCGGAATGTCAGAGCTTGC
TAACTTCGTCATCCGTCCCCCCCGAGCTCACTACTCACGCGCAGAGCTTG
GTGACCGCGATTTCGTAGTGGATGGTGTGCCTGCCCATCGCGTCGACTCA
CACTTGATCAATCGGCGTGGACTTGCGTTGCAGGTGTCTCGATATACCCC
CGCCCATCTGTCCGAAGAGGCACCTACCGTAGTGTATCTTCACGGCAACG
GCTCATGCAGGGCTGAAGCTGCCATGCTTCTTCCAGTCATCATCCCGTAT
GGGTTTTCGTTGCTTGCATTCGACTTCTCGGGTAGTGGAAGGAGCGAGGG
CGAATACATCTCGCTGGGTGTATGGGAGCGATACGATGTTGCAACTGTCG
TCGAACATCTTGTTTCCGTTGGTGTTCAATCCATTGTGCTCTGGGGTCAC
AGTATGGGTGCTGCTACCGCCCTCATGTACTCCGGATTAGAAGAGCGCTC
CAATTGCGTCAAGGGGCTCATTCTGGACTCTCCTTTCTCCAGTTTTGAGA
AGCTTGCTCACTTTTTGGTCTCCGAAATGCGCCTACCCCTCGCTATCTCG
CGCAAGCTCATACTGTCCGTGGGAATCCGCGCTGTCAGAAAGATTGTTCG
AGAACGAGCCGATTTCGATGTTTTGGACATCGACCCACTCTCGGCAACAA
AGAACATACCCTCCACGCTCCCCGCAATTTTCATGCATGGTACTTCGGAT
GCAGTCGTCCCATTTTCACATGGCCAGGCACTTTTCAAGCATTATCCCTG
TCCTGACAAGACTTGGATTCCTCTTGAGGCATTCGAACACGATACGCCGC
GTCCGGAATCCTGCATGGACCGCGCACATGTTTTTCTCCAACGCGTACTT
CCCGATTTTGCACCAGGATCCCCGCCACACATGGAAATCCTGAAGGCGCG
TGGAAATTCTGCCATGCTGTCTGGGCGTTTTGCTGACTCTATATATGTGT
ACACCGAAGCGTTAAATGCGCTTTCTCAGAGTCTAACCGACACACCGTTT
GCCAAGGCAGTTGGTGAGCCCTTTACACCGACAATCCATGATGCCTTGCC
ATCACGGCGCAATTCCTCAATTGTGACTCTGCTCCATTCGATGAAATGGC
GCTCACGAGATGACCCCTCTCGCGCTCGCGTACCGATACGGCGAGCATCC
GATGAACTTCACAAGTCCTATGAGAATACTTTGGCAGACGATACATCCCA
ACCAAACACCATCCCCGAATGCTTACGAAGCGATAGTGCGGCATGGAGCG
GCCGTTTTGTCAGGCAGAAATCTTTCTCGGCGAAAGGTGTGCTTCAAAAT
ATTAAGCATCGAGTGCGAACTGGACGTAGCTGGAAAGGAGAACCGACCGA
GGCTGAGACGGAACAGTCTACCTCAAATGCTGCAGAGCCAGATGAAACTT
CGTCATGTCCGGACATTGCGAACTCACCAACGAGACCCCAAACCAGAAGA
CTAAGTAGAACTGAGCGTTCTTCTGCCCGTATTCGTCTGCGTAGTACAAC
TAAGCCCGAACGTCGCCAATCTCAACAGACTCATTCCAACGTCAAAGAAA
GACCGATGGACAACCTCGAAGAACTGAGGAACAGTTCAACAACTATTTCA
TGTTTTGGTAGGGGCTTCCACAGATCTGACAAACGTCGAAAGTATCTACT
ACGGCGCACAAAACAAGGTTCTAATGTTGCAAGGAGAGAGGGATACGGTA
TTGTGGGCTTGGGTATATCAGATTGGGATATGAATTCTGAAATCAAGGCT
CTTACCCTCGCATTGCTTGGAAACCGCAGCTTAGCGCGACGAAGGGTAGG
AGACATTCAAGGTTCATTGTTTGATGCGGTTACGAGTCTGCAGCTTGACC
CGTCATGGATTAGAGGGTATCTCAGAAAAGCCGCAGCGCTGAGAGAAGAT
GGGCGGTTCGAACAGGCACGGAACGTAATAATGGAAGGGCTGAAACAAGA
CTCTAATCACGCTGGTTTGATGGATATGTTGCGAAGCATTGAGGAAGTTG
TGGAAACAGAACAGATGGGCGCTGAGGAAAACAAGACCGATGCTAAAGTG
CGTGATTGTGATACTCAGTCATCACCAAGTGCAGTGGCTGGATCTTGTTG
A

Coding sequence (CDS) from alignment at tig00004390_pilon:187307..189457-

>Gchil6504.t1 ID=Gchil6504.t1|Name=Gchil6504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2151bp|location=Sequence derived from alignment at tig00004390_pilon:187307..189457- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGACGCCGTGGACCCGCTCTCTTCCGCCGGAATGTCAGAGCTTGC
TAACTTCGTCATCCGTCCCCCCCGAGCTCACTACTCACGCGCAGAGCTTG
GTGACCGCGATTTCGTAGTGGATGGTGTGCCTGCCCATCGCGTCGACTCA
CACTTGATCAATCGGCGTGGACTTGCGTTGCAGGTGTCTCGATATACCCC
CGCCCATCTGTCCGAAGAGGCACCTACCGTAGTGTATCTTCACGGCAACG
GCTCATGCAGGGCTGAAGCTGCCATGCTTCTTCCAGTCATCATCCCGTAT
GGGTTTTCGTTGCTTGCATTCGACTTCTCGGGTAGTGGAAGGAGCGAGGG
CGAATACATCTCGCTGGGTGTATGGGAGCGATACGATGTTGCAACTGTCG
TCGAACATCTTGTTTCCGTTGGTGTTCAATCCATTGTGCTCTGGGGTCAC
AGTATGGGTGCTGCTACCGCCCTCATGTACTCCGGATTAGAAGAGCGCTC
CAATTGCGTCAAGGGGCTCATTCTGGACTCTCCTTTCTCCAGTTTTGAGA
AGCTTGCTCACTTTTTGGTCTCCGAAATGCGCCTACCCCTCGCTATCTCG
CGCAAGCTCATACTGTCCGTGGGAATCCGCGCTGTCAGAAAGATTGTTCG
AGAACGAGCCGATTTCGATGTTTTGGACATCGACCCACTCTCGGCAACAA
AGAACATACCCTCCACGCTCCCCGCAATTTTCATGCATGGTACTTCGGAT
GCAGTCGTCCCATTTTCACATGGCCAGGCACTTTTCAAGCATTATCCCTG
TCCTGACAAGACTTGGATTCCTCTTGAGGCATTCGAACACGATACGCCGC
GTCCGGAATCCTGCATGGACCGCGCACATGTTTTTCTCCAACGCGTACTT
CCCGATTTTGCACCAGGATCCCCGCCACACATGGAAATCCTGAAGGCGCG
TGGAAATTCTGCCATGCTGTCTGGGCGTTTTGCTGACTCTATATATGTGT
ACACCGAAGCGTTAAATGCGCTTTCTCAGAGTCTAACCGACACACCGTTT
GCCAAGGCAGTTGGTGAGCCCTTTACACCGACAATCCATGATGCCTTGCC
ATCACGGCGCAATTCCTCAATTGTGACTCTGCTCCATTCGATGAAATGGC
GCTCACGAGATGACCCCTCTCGCGCTCGCGTACCGATACGGCGAGCATCC
GATGAACTTCACAAGTCCTATGAGAATACTTTGGCAGACGATACATCCCA
ACCAAACACCATCCCCGAATGCTTACGAAGCGATAGTGCGGCATGGAGCG
GCCGTTTTGTCAGGCAGAAATCTTTCTCGGCGAAAGGTGTGCTTCAAAAT
ATTAAGCATCGAGTGCGAACTGGACGTAGCTGGAAAGGAGAACCGACCGA
GGCTGAGACGGAACAGTCTACCTCAAATGCTGCAGAGCCAGATGAAACTT
CGTCATGTCCGGACATTGCGAACTCACCAACGAGACCCCAAACCAGAAGA
CTAAGTAGAACTGAGCGTTCTTCTGCCCGTATTCGTCTGCGTAGTACAAC
TAAGCCCGAACGTCGCCAATCTCAACAGACTCATTCCAACGTCAAAGAAA
GACCGATGGACAACCTCGAAGAACTGAGGAACAGTTCAACAACTATTTCA
TGTTTTGGTAGGGGCTTCCACAGATCTGACAAACGTCGAAAGTATCTACT
ACGGCGCACAAAACAAGGTTCTAATGTTGCAAGGAGAGAGGGATACGGTA
TTGTGGGCTTGGGTATATCAGATTGGGATATGAATTCTGAAATCAAGGCT
CTTACCCTCGCATTGCTTGGAAACCGCAGCTTAGCGCGACGAAGGGTAGG
AGACATTCAAGGTTCATTGTTTGATGCGGTTACGAGTCTGCAGCTTGACC
CGTCATGGATTAGAGGGTATCTCAGAAAAGCCGCAGCGCTGAGAGAAGAT
GGGCGGTTCGAACAGGCACGGAACGTAATAATGGAAGGGCTGAAACAAGA
CTCTAATCACGCTGGTTTGATGGATATGTTGCGAAGCATTGAGGAAGTTG
TGGAAACAGAACAGATGGGCGCTGAGGAAAACAAGACCGATGCTAAAGTG
CGTGATTGTGATACTCAGTCATCACCAAGTGCAGTGGCTGGATCTTGTTG
A