Gchil6594.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6594.t1
Unique NameGchil6594.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:721728..722546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog326427.Cagg_3166
Preferred namethiE
PFAMsTMP-TENI
Max annot lvl32061|Chloroflexia
KEGG rclassRC00224,RC03255,RC03397
KEGG koko:K00788
KEGG ReactionR03223,R10712
KEGG Pathwayko00730,ko01100,map00730,map01100
KEGG ModuleM00127
GOsGO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue5.2e-44
EggNOG OGsCOG0352@1|root,COG0352@2|Bacteria,2G6P0@200795|Chloroflexi,375RT@32061|Chloroflexia
EC2.5.1.3
DescriptionCondenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6594Gchil6594Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 721728..722546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6594.t1Gchil6594.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 721728..722546 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6594.t1.stop1Gchil6594.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 721728..721730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6594.t1.CDS1Gchil6594.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 721728..722265 -
Gchil6594.t1.CDS2Gchil6594.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 722362..722546 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6594.t1.exon1Gchil6594.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 721728..722265 -
Gchil6594.t1.exon2Gchil6594.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 722362..722546 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6594.t1.intron1Gchil6594.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 722266..722361 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6594.t1.start1Gchil6594.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 722544..722546 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6594.t1 ID=Gchil6594.t1|Name=Gchil6594.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=241bp
MPRPSPICLPRRAVCMRVSRRNFDPSVYLVTDRRTAPRLSVQQIVSQVMP
TAAHPHQVTFVQLRDKNVSREQSIELGKHLRQITEHAHVAFVVNDDIRLA
ALLGADGVHLGQDDQSVSTARRLLGNHAIVGVSAATEHEIDTAIADGADY
IGVGPVFATSSKPDAGQALGEDQLRRLVRHTDSRIPVVAIGGINEHNVAF
CKRAGVDGVAVISAIMASHQPSLAAQKLAAIMGKRDVTVT*
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spliced messenger RNA

>Gchil6594.t1 ID=Gchil6594.t1|Name=Gchil6594.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00004390_pilon:721728..722546- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACGGCCTAGCCCGATATGCCTTCCTCGCCGTGCCGTTTGCATGCG
CGTATCGCGCCGCAATTTCGACCCGTCCGTGTATTTGGTCACGGACCGCC
GCACTGCGCCGCGTCTCAGTGTGCAGCAGATAGTCTCGCAAGTCATGCCC
ACGGCAGCGCATCCGCACCAAGTCACCTTTGTGCAACTGCGCGACAAAAA
CGTTTCTCGCGAACAGTCAATCGAATTGGGGAAGCACTTGCGCCAAATCA
CAGAGCATGCCCATGTCGCCTTCGTCGTCAACGATGATATTCGTCTCGCC
GCTTTGTTGGGCGCCGATGGCGTCCATCTCGGCCAGGACGACCAATCCGT
TTCAACCGCCAGACGCTTGTTGGGTAACCACGCAATCGTCGGCGTCTCTG
CTGCCACTGAGCACGAAATTGACACTGCTATAGCTGATGGCGCAGATTAC
ATCGGTGTAGGGCCAGTGTTCGCAACCTCTTCCAAACCTGATGCTGGGCA
GGCTCTCGGCGAAGACCAACTACGCCGCTTAGTGCGTCATACTGACTCCA
GAATTCCGGTGGTTGCCATCGGCGGCATTAACGAGCACAACGTTGCCTTC
TGCAAACGCGCAGGTGTCGATGGCGTTGCGGTCATTTCGGCCATAATGGC
AAGTCATCAGCCTTCACTAGCAGCTCAGAAGTTGGCTGCAATCATGGGCA
AGCGCGACGTTACCGTAACATAG
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protein sequence of Gchil6594.t1

>Gchil6594.t1 ID=Gchil6594.t1|Name=Gchil6594.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=241bp
MPRPSPICLPRRAVCMRVSRRNFDPSVYLVTDRRTAPRLSVQQIVSQVMP
TAAHPHQVTFVQLRDKNVSREQSIELGKHLRQITEHAHVAFVVNDDIRLA
ALLGADGVHLGQDDQSVSTARRLLGNHAIVGVSAATEHEIDTAIADGADY
IGVGPVFATSSKPDAGQALGEDQLRRLVRHTDSRIPVVAIGGINEHNVAF
CKRAGVDGVAVISAIMASHQPSLAAQKLAAIMGKRDVTVT*
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mRNA from alignment at tig00004390_pilon:721728..722546-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6594.t1 ID=Gchil6594.t1|Name=Gchil6594.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00004390_pilon:721728..722546- (Gracilaria chilensis NLEC103_M9 male)
ATGCCACGGCCTAGCCCGATATGCCTTCCTCGCCGTGCCGTTTGCATGCG
CGTATCGCGCCGCAATTTCGACCCGTCCGTGTATTTGGTCACGGACCGCC
GCACTGCGCCGCGTCTCAGTGTGCAGCAGATAGTCTCGCAAGTCATGCCC
ACGGCAGCGCATCCGCACCAAGTCACCTTTGTGCAGTACGTTTGACGCTT
CTTTTTGCCCAGCTCCCGTCCAGCTGCGTCATTCGTGCTTGGCCCATTTT
CACTAGCCACTCCCCGCTGACCAATCCGTAGACTGCGCGACAAAAACGTT
TCTCGCGAACAGTCAATCGAATTGGGGAAGCACTTGCGCCAAATCACAGA
GCATGCCCATGTCGCCTTCGTCGTCAACGATGATATTCGTCTCGCCGCTT
TGTTGGGCGCCGATGGCGTCCATCTCGGCCAGGACGACCAATCCGTTTCA
ACCGCCAGACGCTTGTTGGGTAACCACGCAATCGTCGGCGTCTCTGCTGC
CACTGAGCACGAAATTGACACTGCTATAGCTGATGGCGCAGATTACATCG
GTGTAGGGCCAGTGTTCGCAACCTCTTCCAAACCTGATGCTGGGCAGGCT
CTCGGCGAAGACCAACTACGCCGCTTAGTGCGTCATACTGACTCCAGAAT
TCCGGTGGTTGCCATCGGCGGCATTAACGAGCACAACGTTGCCTTCTGCA
AACGCGCAGGTGTCGATGGCGTTGCGGTCATTTCGGCCATAATGGCAAGT
CATCAGCCTTCACTAGCAGCTCAGAAGTTGGCTGCAATCATGGGCAAGCG
CGACGTTACCGTAACATAG
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Coding sequence (CDS) from alignment at tig00004390_pilon:721728..722546-

>Gchil6594.t1 ID=Gchil6594.t1|Name=Gchil6594.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00004390_pilon:721728..722546- (Gracilaria chilensis NLEC103_M9 male)
ATGCCACGGCCTAGCCCGATATGCCTTCCTCGCCGTGCCGTTTGCATGCG
CGTATCGCGCCGCAATTTCGACCCGTCCGTGTATTTGGTCACGGACCGCC
GCACTGCGCCGCGTCTCAGTGTGCAGCAGATAGTCTCGCAAGTCATGCCC
ACGGCAGCGCATCCGCACCAAGTCACCTTTGTGCAACTGCGCGACAAAAA
CGTTTCTCGCGAACAGTCAATCGAATTGGGGAAGCACTTGCGCCAAATCA
CAGAGCATGCCCATGTCGCCTTCGTCGTCAACGATGATATTCGTCTCGCC
GCTTTGTTGGGCGCCGATGGCGTCCATCTCGGCCAGGACGACCAATCCGT
TTCAACCGCCAGACGCTTGTTGGGTAACCACGCAATCGTCGGCGTCTCTG
CTGCCACTGAGCACGAAATTGACACTGCTATAGCTGATGGCGCAGATTAC
ATCGGTGTAGGGCCAGTGTTCGCAACCTCTTCCAAACCTGATGCTGGGCA
GGCTCTCGGCGAAGACCAACTACGCCGCTTAGTGCGTCATACTGACTCCA
GAATTCCGGTGGTTGCCATCGGCGGCATTAACGAGCACAACGTTGCCTTC
TGCAAACGCGCAGGTGTCGATGGCGTTGCGGTCATTTCGGCCATAATGGC
AAGTCATCAGCCTTCACTAGCAGCTCAGAAGTTGGCTGCAATCATGGGCA
AGCGCGACGTTACCGTAACATAG
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