Gchil6257.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6257.t1
Unique NameGchil6257.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length471
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004388_piloncontigtig00004388_pilon:181597..183009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5741.EDO80921
PFAMszf-C3HC4_3
Max annot lvl2759|Eukaryota
KEGG koko:K15693
GOsGO:0003674,GO:0005488,GO:0008270,GO:0043167,GO:0043169,GO:0046872,GO:0046914
Evalue1.7e-06
EggNOG OGsKOG4265@1|root,KOG4265@2759|Eukaryota
Descriptionubiquitin-protein transferase activity
COG categoryKL
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6257Gchil6257Gracilaria chilensis NLEC103_M9 malegenetig00004388_pilon 181597..183009 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6257.t1.stop1Gchil6257.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004388_pilon 181597..181599 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6257.t1.CDS1Gchil6257.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004388_pilon 181597..183009 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6257.t1.exon1Gchil6257.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004388_pilon 181597..183009 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6257.t1.start1Gchil6257.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004388_pilon 183007..183009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6257.t1Gchil6257.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004388_pilon 181597..183009 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6257.t1 ID=Gchil6257.t1|Name=Gchil6257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=471bp
MDSDIHNVQQDPQQTLPQHVIPDQQRPQHQHQPQLPTPVVHPVATSLVEL
TTTTATHDLSPPLSPSNLSATPPLSPHLSEQPSPLSDSDDHSAPASPKHK
QSETALLDSDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCR
ARARKVIIRQPGCDDVIKAVRDIIAERRQRESKVLEDTLQVVFLGPEKVG
KKTLVTKLMTKYPAPGAPSEPLPLEDLFSDGTDFSPNAFIGGMNVRLTVL
RRTSLTSRRMILDDVRVLKPDVLVLCCSSHINSTFDLILNWDKILRNNFQ
KPRVWACLTNDGLEGDPATIDVKSAISAISPPDLRPKAHYFCSTDDNFSV
SFRSLAKDIVTMGRIARDEELANSIALEEARNLADHEAAGTLADHAAASL
VIANNGIGVPPSSHSSSNSSRANNNNSRHHHGVGRTFSLRGLRDRGNHHG
QGLSLSNFIVWNWFASSNES*
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spliced messenger RNA

>Gchil6257.t1 ID=Gchil6257.t1|Name=Gchil6257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00004388_pilon:181597..183009- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCCGACATCCACAATGTACAACAAGACCCGCAGCAGACGCTCCC
TCAACACGTAATCCCAGATCAACAACGACCGCAACACCAACATCAACCTC
AACTACCCACTCCCGTCGTCCACCCGGTCGCCACATCCCTCGTGGAACTC
ACTACCACCACTGCCACCCATGATCTCTCACCCCCACTCTCTCCCTCAAA
TCTCTCCGCAACCCCCCCGCTCTCCCCACACTTGTCCGAGCAACCCTCCC
CGCTGTCTGACAGCGACGACCACTCCGCCCCGGCTTCCCCAAAACACAAG
CAATCTGAAACCGCTTTGTTAGACTCGGATTCTAGCTGCGTCGTGTGCTT
TGAGCGCCCTACCAATGTCAAATTGGACCCCTGTGGCCATGCCAACTTGT
GTGACGTTTGCGTCAGTCGCTTGGTCAAGAGGCGTTGCCCAACATGTCGC
GCAAGAGCCAGAAAGGTCATTATTCGCCAACCCGGCTGTGATGATGTCAT
CAAAGCCGTCAGAGATATTATTGCGGAGAGAAGGCAGCGCGAATCCAAGG
TTTTGGAAGATACGCTGCAAGTGGTCTTTCTAGGCCCCGAAAAAGTCGGC
AAGAAGACGCTTGTCACCAAGTTGATGACCAAGTATCCCGCTCCTGGCGC
TCCGAGTGAACCTCTTCCGCTCGAGGATTTGTTTAGTGATGGAACCGATT
TTTCACCCAACGCATTTATTGGTGGCATGAACGTGCGTCTCACTGTGCTC
AGAAGGACCAGTCTCACATCGCGAAGAATGATATTGGATGACGTCCGTGT
TCTAAAGCCAGATGTGCTTGTGCTCTGCTGTTCCTCACATATCAATTCTA
CCTTTGATCTCATCTTGAATTGGGACAAAATTCTACGCAACAACTTTCAA
AAACCCAGAGTGTGGGCTTGTCTCACCAACGATGGTTTGGAAGGCGACCC
CGCCACCATTGATGTCAAAAGTGCCATCAGTGCCATTTCCCCGCCCGACC
TTCGACCCAAGGCGCACTACTTCTGCTCTACTGATGATAATTTTTCAGTC
AGCTTCCGTTCTTTGGCAAAGGATATTGTGACTATGGGAAGGATAGCGCG
TGATGAGGAGCTTGCCAACTCCATTGCTCTTGAAGAGGCCCGCAACCTTG
CAGATCATGAGGCTGCCGGCACTCTGGCCGATCATGCCGCGGCCAGTCTT
GTAATTGCAAACAATGGAATTGGTGTTCCGCCATCATCTCATTCTTCGTC
AAACTCTAGCCGCGCCAACAATAATAATTCTAGACATCATCATGGGGTGG
GTCGAACATTTTCCTTGCGTGGCTTACGTGATCGGGGCAATCATCATGGT
CAGGGTCTTTCACTTTCAAATTTCATTGTGTGGAACTGGTTTGCCAGTTC
CAATGAATCATAA
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protein sequence of Gchil6257.t1

>Gchil6257.t1 ID=Gchil6257.t1|Name=Gchil6257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=471bp
MDSDIHNVQQDPQQTLPQHVIPDQQRPQHQHQPQLPTPVVHPVATSLVEL
TTTTATHDLSPPLSPSNLSATPPLSPHLSEQPSPLSDSDDHSAPASPKHK
QSETALLDSDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCR
ARARKVIIRQPGCDDVIKAVRDIIAERRQRESKVLEDTLQVVFLGPEKVG
KKTLVTKLMTKYPAPGAPSEPLPLEDLFSDGTDFSPNAFIGGMNVRLTVL
RRTSLTSRRMILDDVRVLKPDVLVLCCSSHINSTFDLILNWDKILRNNFQ
KPRVWACLTNDGLEGDPATIDVKSAISAISPPDLRPKAHYFCSTDDNFSV
SFRSLAKDIVTMGRIARDEELANSIALEEARNLADHEAAGTLADHAAASL
VIANNGIGVPPSSHSSSNSSRANNNNSRHHHGVGRTFSLRGLRDRGNHHG
QGLSLSNFIVWNWFASSNES*
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mRNA from alignment at tig00004388_pilon:181597..183009-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6257.t1 ID=Gchil6257.t1|Name=Gchil6257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00004388_pilon:181597..183009- (Gracilaria chilensis NLEC103_M9 male)
ATGGACTCCGACATCCACAATGTACAACAAGACCCGCAGCAGACGCTCCC
TCAACACGTAATCCCAGATCAACAACGACCGCAACACCAACATCAACCTC
AACTACCCACTCCCGTCGTCCACCCGGTCGCCACATCCCTCGTGGAACTC
ACTACCACCACTGCCACCCATGATCTCTCACCCCCACTCTCTCCCTCAAA
TCTCTCCGCAACCCCCCCGCTCTCCCCACACTTGTCCGAGCAACCCTCCC
CGCTGTCTGACAGCGACGACCACTCCGCCCCGGCTTCCCCAAAACACAAG
CAATCTGAAACCGCTTTGTTAGACTCGGATTCTAGCTGCGTCGTGTGCTT
TGAGCGCCCTACCAATGTCAAATTGGACCCCTGTGGCCATGCCAACTTGT
GTGACGTTTGCGTCAGTCGCTTGGTCAAGAGGCGTTGCCCAACATGTCGC
GCAAGAGCCAGAAAGGTCATTATTCGCCAACCCGGCTGTGATGATGTCAT
CAAAGCCGTCAGAGATATTATTGCGGAGAGAAGGCAGCGCGAATCCAAGG
TTTTGGAAGATACGCTGCAAGTGGTCTTTCTAGGCCCCGAAAAAGTCGGC
AAGAAGACGCTTGTCACCAAGTTGATGACCAAGTATCCCGCTCCTGGCGC
TCCGAGTGAACCTCTTCCGCTCGAGGATTTGTTTAGTGATGGAACCGATT
TTTCACCCAACGCATTTATTGGTGGCATGAACGTGCGTCTCACTGTGCTC
AGAAGGACCAGTCTCACATCGCGAAGAATGATATTGGATGACGTCCGTGT
TCTAAAGCCAGATGTGCTTGTGCTCTGCTGTTCCTCACATATCAATTCTA
CCTTTGATCTCATCTTGAATTGGGACAAAATTCTACGCAACAACTTTCAA
AAACCCAGAGTGTGGGCTTGTCTCACCAACGATGGTTTGGAAGGCGACCC
CGCCACCATTGATGTCAAAAGTGCCATCAGTGCCATTTCCCCGCCCGACC
TTCGACCCAAGGCGCACTACTTCTGCTCTACTGATGATAATTTTTCAGTC
AGCTTCCGTTCTTTGGCAAAGGATATTGTGACTATGGGAAGGATAGCGCG
TGATGAGGAGCTTGCCAACTCCATTGCTCTTGAAGAGGCCCGCAACCTTG
CAGATCATGAGGCTGCCGGCACTCTGGCCGATCATGCCGCGGCCAGTCTT
GTAATTGCAAACAATGGAATTGGTGTTCCGCCATCATCTCATTCTTCGTC
AAACTCTAGCCGCGCCAACAATAATAATTCTAGACATCATCATGGGGTGG
GTCGAACATTTTCCTTGCGTGGCTTACGTGATCGGGGCAATCATCATGGT
CAGGGTCTTTCACTTTCAAATTTCATTGTGTGGAACTGGTTTGCCAGTTC
CAATGAATCATAA
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Coding sequence (CDS) from alignment at tig00004388_pilon:181597..183009-

>Gchil6257.t1 ID=Gchil6257.t1|Name=Gchil6257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00004388_pilon:181597..183009- (Gracilaria chilensis NLEC103_M9 male)
ATGGACTCCGACATCCACAATGTACAACAAGACCCGCAGCAGACGCTCCC
TCAACACGTAATCCCAGATCAACAACGACCGCAACACCAACATCAACCTC
AACTACCCACTCCCGTCGTCCACCCGGTCGCCACATCCCTCGTGGAACTC
ACTACCACCACTGCCACCCATGATCTCTCACCCCCACTCTCTCCCTCAAA
TCTCTCCGCAACCCCCCCGCTCTCCCCACACTTGTCCGAGCAACCCTCCC
CGCTGTCTGACAGCGACGACCACTCCGCCCCGGCTTCCCCAAAACACAAG
CAATCTGAAACCGCTTTGTTAGACTCGGATTCTAGCTGCGTCGTGTGCTT
TGAGCGCCCTACCAATGTCAAATTGGACCCCTGTGGCCATGCCAACTTGT
GTGACGTTTGCGTCAGTCGCTTGGTCAAGAGGCGTTGCCCAACATGTCGC
GCAAGAGCCAGAAAGGTCATTATTCGCCAACCCGGCTGTGATGATGTCAT
CAAAGCCGTCAGAGATATTATTGCGGAGAGAAGGCAGCGCGAATCCAAGG
TTTTGGAAGATACGCTGCAAGTGGTCTTTCTAGGCCCCGAAAAAGTCGGC
AAGAAGACGCTTGTCACCAAGTTGATGACCAAGTATCCCGCTCCTGGCGC
TCCGAGTGAACCTCTTCCGCTCGAGGATTTGTTTAGTGATGGAACCGATT
TTTCACCCAACGCATTTATTGGTGGCATGAACGTGCGTCTCACTGTGCTC
AGAAGGACCAGTCTCACATCGCGAAGAATGATATTGGATGACGTCCGTGT
TCTAAAGCCAGATGTGCTTGTGCTCTGCTGTTCCTCACATATCAATTCTA
CCTTTGATCTCATCTTGAATTGGGACAAAATTCTACGCAACAACTTTCAA
AAACCCAGAGTGTGGGCTTGTCTCACCAACGATGGTTTGGAAGGCGACCC
CGCCACCATTGATGTCAAAAGTGCCATCAGTGCCATTTCCCCGCCCGACC
TTCGACCCAAGGCGCACTACTTCTGCTCTACTGATGATAATTTTTCAGTC
AGCTTCCGTTCTTTGGCAAAGGATATTGTGACTATGGGAAGGATAGCGCG
TGATGAGGAGCTTGCCAACTCCATTGCTCTTGAAGAGGCCCGCAACCTTG
CAGATCATGAGGCTGCCGGCACTCTGGCCGATCATGCCGCGGCCAGTCTT
GTAATTGCAAACAATGGAATTGGTGTTCCGCCATCATCTCATTCTTCGTC
AAACTCTAGCCGCGCCAACAATAATAATTCTAGACATCATCATGGGGTGG
GTCGAACATTTTCCTTGCGTGGCTTACGTGATCGGGGCAATCATCATGGT
CAGGGTCTTTCACTTTCAAATTTCATTGTGTGGAACTGGTTTGCCAGTTC
CAATGAATCATAA
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