Gchil3795.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3795.t1
Unique NameGchil3795.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length417
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:424995..426245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703145.1
PFAMsIPK
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K07756
KEGG ReactionR09087,R10548
KEGG Pathwayko04070,ko04138,map04070,map04138
Evalue2.16e-61
EggNOG OGsKOG1620@1|root,KOG1620@2759|Eukaryota
EC2.7.4.21
Descriptioninositol phosphate biosynthetic process
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3795Gchil3795Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 424995..426245 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3795.t1.stop1Gchil3795.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 424995..424997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3795.t1.CDS1Gchil3795.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 424995..426245 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3795.t1.exon1Gchil3795.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 424995..426245 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3795.t1.start1Gchil3795.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 426243..426245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3795.t1Gchil3795.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 424995..426245 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3795.t1 ID=Gchil3795.t1|Name=Gchil3795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=417bp
MDDAATQQRQQQQQQQQQQQQQQQQQQQQREGAAYPHQVGGHGQLRVARP
GRVLKPLLAKEFAFYCYVNDAALPPALRWLRRYTPRFYGRVSSPPLASAS
SSASSSASSSASSPVVPAAVPLRWRASDGELLTALSPWAAHMSVAGGATL
HDAIELEDINARFIIPCVLDCKIGTRHYDDDASEEKRLRHIHKANATTSA
KCGVRLIGMQSFKHAADTGCDCGVFESRDKYHGRSLRERDLVPQLRWFFH
DNWRVRLDCVALLLQHLVALRRHVSQQVNFFFYSSSLLLVYEGARVVENT
RVSRVDARMIDFAHTVRSAGRRDDGYLKGLDYLIAALKQIVCDARPRDRS
PSCAAFDADATATPAPAPAPAPATVAVAVAPNDAATRGACACACACDKDA
SSSSSSSSSSQERDVR*
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spliced messenger RNA

>Gchil3795.t1 ID=Gchil3795.t1|Name=Gchil3795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000010_pilon:424995..426245- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGACGCGGCGACACAGCAGCGGCAGCAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAGCAGCGAGAGGGCGCGG
CGTACCCGCACCAGGTGGGCGGGCACGGGCAGCTGCGCGTGGCGCGTCCC
GGACGGGTGCTCAAACCGCTGCTCGCAAAGGAGTTTGCGTTTTACTGCTA
CGTCAACGACGCCGCGCTGCCGCCCGCCCTACGTTGGTTGCGTCGCTACA
CGCCGCGCTTCTACGGTCGTGTGTCCTCCCCCCCCCTTGCGTCTGCGTCG
TCGTCTGCGTCGTCGTCTGCGTCGTCGTCTGCGTCGTCGCCCGTCGTGCC
CGCCGCTGTGCCGCTGCGCTGGCGCGCTTCTGACGGCGAGCTACTCACGG
CGCTCTCGCCGTGGGCCGCGCACATGAGTGTTGCCGGCGGCGCTACACTG
CACGACGCCATTGAGCTGGAGGATATTAACGCCCGTTTTATCATCCCCTG
CGTGCTGGATTGCAAGATTGGTACGCGTCACTACGACGACGACGCGTCCG
AGGAGAAGCGTTTGCGCCACATACACAAGGCAAACGCCACTACGTCGGCC
AAATGCGGCGTGCGTCTCATTGGTATGCAATCGTTCAAACACGCCGCCGA
CACCGGCTGTGACTGCGGTGTGTTTGAGAGTCGCGACAAATACCACGGTC
GTTCCCTTCGCGAACGCGACCTTGTTCCGCAACTTCGTTGGTTCTTCCAT
GACAACTGGCGCGTGCGCCTCGATTGCGTGGCACTTTTGTTGCAACATCT
AGTGGCACTACGTCGTCATGTATCACAACAGGTCAACTTTTTCTTCTACT
CGTCGTCGCTCCTTCTCGTGTACGAGGGCGCGCGTGTGGTTGAAAACACG
CGCGTTTCACGCGTGGACGCGCGCATGATAGACTTTGCGCACACGGTGCG
ATCGGCGGGACGTCGAGACGACGGATATCTTAAGGGGCTTGATTATCTTA
TTGCGGCGCTCAAACAGATTGTGTGCGACGCGCGCCCGCGCGACAGGTCG
CCCTCGTGCGCTGCGTTCGACGCGGACGCCACGGCCACGCCCGCGCCCGC
GCCCGCGCCCGCGCCCGCAACTGTTGCTGTCGCTGTCGCACCGAACGACG
CCGCCACGCGCGGCGCGTGCGCGTGCGCGTGCGCGTGCGACAAGGACGCG
TCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCAAGAGCGAGACGTGCGGTG
A
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protein sequence of Gchil3795.t1

>Gchil3795.t1 ID=Gchil3795.t1|Name=Gchil3795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=417bp
MDDAATQQRQQQQQQQQQQQQQQQQQQQQREGAAYPHQVGGHGQLRVARP
GRVLKPLLAKEFAFYCYVNDAALPPALRWLRRYTPRFYGRVSSPPLASAS
SSASSSASSSASSPVVPAAVPLRWRASDGELLTALSPWAAHMSVAGGATL
HDAIELEDINARFIIPCVLDCKIGTRHYDDDASEEKRLRHIHKANATTSA
KCGVRLIGMQSFKHAADTGCDCGVFESRDKYHGRSLRERDLVPQLRWFFH
DNWRVRLDCVALLLQHLVALRRHVSQQVNFFFYSSSLLLVYEGARVVENT
RVSRVDARMIDFAHTVRSAGRRDDGYLKGLDYLIAALKQIVCDARPRDRS
PSCAAFDADATATPAPAPAPAPATVAVAVAPNDAATRGACACACACDKDA
SSSSSSSSSSQERDVR*
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mRNA from alignment at tig00000010_pilon:424995..426245-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3795.t1 ID=Gchil3795.t1|Name=Gchil3795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000010_pilon:424995..426245- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGACGCGGCGACACAGCAGCGGCAGCAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAGCAGCGAGAGGGCGCGG
CGTACCCGCACCAGGTGGGCGGGCACGGGCAGCTGCGCGTGGCGCGTCCC
GGACGGGTGCTCAAACCGCTGCTCGCAAAGGAGTTTGCGTTTTACTGCTA
CGTCAACGACGCCGCGCTGCCGCCCGCCCTACGTTGGTTGCGTCGCTACA
CGCCGCGCTTCTACGGTCGTGTGTCCTCCCCCCCCCTTGCGTCTGCGTCG
TCGTCTGCGTCGTCGTCTGCGTCGTCGTCTGCGTCGTCGCCCGTCGTGCC
CGCCGCTGTGCCGCTGCGCTGGCGCGCTTCTGACGGCGAGCTACTCACGG
CGCTCTCGCCGTGGGCCGCGCACATGAGTGTTGCCGGCGGCGCTACACTG
CACGACGCCATTGAGCTGGAGGATATTAACGCCCGTTTTATCATCCCCTG
CGTGCTGGATTGCAAGATTGGTACGCGTCACTACGACGACGACGCGTCCG
AGGAGAAGCGTTTGCGCCACATACACAAGGCAAACGCCACTACGTCGGCC
AAATGCGGCGTGCGTCTCATTGGTATGCAATCGTTCAAACACGCCGCCGA
CACCGGCTGTGACTGCGGTGTGTTTGAGAGTCGCGACAAATACCACGGTC
GTTCCCTTCGCGAACGCGACCTTGTTCCGCAACTTCGTTGGTTCTTCCAT
GACAACTGGCGCGTGCGCCTCGATTGCGTGGCACTTTTGTTGCAACATCT
AGTGGCACTACGTCGTCATGTATCACAACAGGTCAACTTTTTCTTCTACT
CGTCGTCGCTCCTTCTCGTGTACGAGGGCGCGCGTGTGGTTGAAAACACG
CGCGTTTCACGCGTGGACGCGCGCATGATAGACTTTGCGCACACGGTGCG
ATCGGCGGGACGTCGAGACGACGGATATCTTAAGGGGCTTGATTATCTTA
TTGCGGCGCTCAAACAGATTGTGTGCGACGCGCGCCCGCGCGACAGGTCG
CCCTCGTGCGCTGCGTTCGACGCGGACGCCACGGCCACGCCCGCGCCCGC
GCCCGCGCCCGCGCCCGCAACTGTTGCTGTCGCTGTCGCACCGAACGACG
CCGCCACGCGCGGCGCGTGCGCGTGCGCGTGCGCGTGCGACAAGGACGCG
TCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCAAGAGCGAGACGTGCGGTG
A
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Coding sequence (CDS) from alignment at tig00000010_pilon:424995..426245-

>Gchil3795.t1 ID=Gchil3795.t1|Name=Gchil3795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1251bp|location=Sequence derived from alignment at tig00000010_pilon:424995..426245- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGACGCGGCGACACAGCAGCGGCAGCAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAGCAGCGAGAGGGCGCGG
CGTACCCGCACCAGGTGGGCGGGCACGGGCAGCTGCGCGTGGCGCGTCCC
GGACGGGTGCTCAAACCGCTGCTCGCAAAGGAGTTTGCGTTTTACTGCTA
CGTCAACGACGCCGCGCTGCCGCCCGCCCTACGTTGGTTGCGTCGCTACA
CGCCGCGCTTCTACGGTCGTGTGTCCTCCCCCCCCCTTGCGTCTGCGTCG
TCGTCTGCGTCGTCGTCTGCGTCGTCGTCTGCGTCGTCGCCCGTCGTGCC
CGCCGCTGTGCCGCTGCGCTGGCGCGCTTCTGACGGCGAGCTACTCACGG
CGCTCTCGCCGTGGGCCGCGCACATGAGTGTTGCCGGCGGCGCTACACTG
CACGACGCCATTGAGCTGGAGGATATTAACGCCCGTTTTATCATCCCCTG
CGTGCTGGATTGCAAGATTGGTACGCGTCACTACGACGACGACGCGTCCG
AGGAGAAGCGTTTGCGCCACATACACAAGGCAAACGCCACTACGTCGGCC
AAATGCGGCGTGCGTCTCATTGGTATGCAATCGTTCAAACACGCCGCCGA
CACCGGCTGTGACTGCGGTGTGTTTGAGAGTCGCGACAAATACCACGGTC
GTTCCCTTCGCGAACGCGACCTTGTTCCGCAACTTCGTTGGTTCTTCCAT
GACAACTGGCGCGTGCGCCTCGATTGCGTGGCACTTTTGTTGCAACATCT
AGTGGCACTACGTCGTCATGTATCACAACAGGTCAACTTTTTCTTCTACT
CGTCGTCGCTCCTTCTCGTGTACGAGGGCGCGCGTGTGGTTGAAAACACG
CGCGTTTCACGCGTGGACGCGCGCATGATAGACTTTGCGCACACGGTGCG
ATCGGCGGGACGTCGAGACGACGGATATCTTAAGGGGCTTGATTATCTTA
TTGCGGCGCTCAAACAGATTGTGTGCGACGCGCGCCCGCGCGACAGGTCG
CCCTCGTGCGCTGCGTTCGACGCGGACGCCACGGCCACGCCCGCGCCCGC
GCCCGCGCCCGCGCCCGCAACTGTTGCTGTCGCTGTCGCACCGAACGACG
CCGCCACGCGCGGCGCGTGCGCGTGCGCGTGCGCGTGCGACAAGGACGCG
TCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCAAGAGCGAGACGTGCGGTG
A
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