Gchil8322.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8322.t1
Unique NameGchil8322.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length170
Homology
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BLAST of Gchil8322.t1 vs. uniprot
Match: A0A2V3IRZ5_9FLOR (Probable ATP-dependent transporter ycf16 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRZ5_9FLOR)

HSP 1 Score: 87.4 bits (215), Expect = 6.490e-17
Identity = 57/129 (44.19%), Postives = 73/129 (56.59%), Query Frame = 0 
Query:   41 PLKSLPRCSRRRKLPVSYEEFDQSNQASRICSRRLFRYACSLDKAMVLAAVAIAVVHGAMFPIFITTIGSVVDEFGTTLLPQFDPNHSATSTISASYSLTWSPVLAKAIFSLVLGNAQLSFVKYAANRI 169
            P   L R  R R+   S  + DQ      +   RLFRYA   D AM++A+V IAV HGA+FP+ ITT G+V+D+ G   LP  D N    + I+ +Y+ T + VL  AI S VLG  QLS    AANRI
Sbjct:   20 PSSVLSRFRRHRREKKSENKSDQHPP---LPYWRLFRYASRTDLAMLVASVLIAVAHGALFPVLITTFGTVLDDIGAAFLPPDDENFVPFTEITGTYTDTSNLVLGIAIASFVLGTMQLSLAVLAANRI 145
The following BLAST results are available for this feature:
BLAST of Gchil8322.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IRZ5_9FLOR6.490e-1744.19Probable ATP-dependent transporter ycf16 n=1 Tax=G... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036640ABC transporter type 1, transmembrane domain superfamilyGENE3D1.20.1560.10ABC transporter type 1, transmembrane domaincoord: 61..169
e-value: 3.6E-7
score: 31.6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 144..166
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 85..105
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 106..143
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..84
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 167..169
NoneNo IPR availableTMHMMTMhelixcoord: 133..155
NoneNo IPR availableTMHMMTMhelixcoord: 87..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1852218..1852727 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8322.t1Gchil8322.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 1852218..1852727 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8322.t1 ID=Gchil8322.t1|Name=Gchil8322.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=170bp
MPSIMSTLLSHVGPCFKNPVESPPTEEHGRANIARADDFLPLKSLPRCSR
RRKLPVSYEEFDQSNQASRICSRRLFRYACSLDKAMVLAAVAIAVVHGAM
FPIFITTIGSVVDEFGTTLLPQFDPNHSATSTISASYSLTWSPVLAKAIF
SLVLGNAQLSFVKYAANRI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036640ABC1_TM_sf