Gchil8129.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8129.t1
Unique NameGchil8129.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length296
Homology
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BLAST of Gchil8129.t1 vs. uniprot
Match: A0A2V3IM40_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM40_9FLOR)

HSP 1 Score: 166 bits (419), Expect = 4.420e-46
Identity = 110/293 (37.54%), Postives = 146/293 (49.83%), Query Frame = 0 
Query:    7 VVATIATIAAGAAASLLLPHLRFSRKHRNPKATQTPKVEHVTDDDEDASRSEEASATTSVTASPRPAQSRLKRARPQS-QPVLCAADVLSLLNTIAPRSHQCFIGSTQCTFCLEPVKGEQLARTTPCRHVFHSNCLEQWALHTTTKLMNAGMYTVARDGIVHYAARFPSCPNCSEVLDVIPRPVWTFFLLSAVTSALSLGHTCRAALMYSSGMVVRDDVLRALHVRIPLEERDRTSAWIESIDDDGSISSRDEE-----SRTQQSGFTPLVLTPGMTRSEQRGFGRSDTRLAY 293
            V+  +  IAA +AA +LLP L F R  RN +   TP   H                       P   Q       PQS +P +    VL+LL+ IAP           CTFCL+ V+  Q  R TPC HVFH++CLEQW ++     MN   YTVARDG +    R PSCPNCS +LDV+P+      LL+AV  +LSL     A+ MY +GMVVRD  LR +HV  P+ +    +  + S  DD S++          S  +  G   L      TR+EQRG+GR++T LA+
Sbjct:    3 VLTIVTAIAAASAARILLPKLPFFR--RNQRRLHTPDPHHTR---------------------PEQQQHSXXXTPPQSHKPHVDHQAVLALLDVIAPCRTDFDSSLANCTFCLDSVRLTQRTRVTPCNHVFHADCLEQWVMYVAADAMNWRAYTVARDGTLRCLLRLPSCPNCSALLDVLPKDQLRTVLLTAVARSLSLKTLGAASEMYQAGMVVRDAALRTMHVGSPVYQ---CNPPLPSDFDDNSVTVSSNGVLLGGSHLRHGGMVALTTPTARTRAEQRGWGRANTHLAF 269
The following BLAST results are available for this feature:
BLAST of Gchil8129.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IM40_9FLOR4.420e-4637.54RING-type domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 114..178
e-value: 1.3E-5
score: 34.7
IPR001841Zinc finger, RING-typePFAMPF17123zf-RING_11coord: 113..141
e-value: 3.9E-8
score: 32.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 114..179
score: 10.556635
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 108..187
e-value: 9.5E-12
score: 46.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 253..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 258..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..80
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..295
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableCDDcd16448RING-H2coord: 114..148
e-value: 7.69102E-8
score: 45.9059
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 110..185
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:93126..94013 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8129.t1Gchil8129.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 93126..94013 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8129.t1 ID=Gchil8129.t1|Name=Gchil8129.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=296bp
MSRNIAVVATIATIAAGAAASLLLPHLRFSRKHRNPKATQTPKVEHVTDD
DEDASRSEEASATTSVTASPRPAQSRLKRARPQSQPVLCAADVLSLLNTI
APRSHQCFIGSTQCTFCLEPVKGEQLARTTPCRHVFHSNCLEQWALHTTT
KLMNAGMYTVARDGIVHYAARFPSCPNCSEVLDVIPRPVWTFFLLSAVTS
ALSLGHTCRAALMYSSGMVVRDDVLRALHVRIPLEERDRTSAWIESIDDD
GSISSRDEESRTQQSGFTPLVLTPGMTRSEQRGFGRSDTRLAYAI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD