Gchil8212.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8212.t1
Unique NameGchil8212.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:694773..695543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2KEF5
PFAMsAAA_16,ORC5_C
Max annot lvl4751|Fungi
KEGG koko:K02607
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0000070,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000808,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005657,GO:0005664,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006270,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0030466,GO:0030554,GO:0031261,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0033260,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036387,GO:0036388,GO:0040029,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0060968,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098813,GO:0140014,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1902275,GO:1902292,GO:1902299,GO:1902315,GO:1902679,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141
Evalue1.37e-14
EggNOG OGsKOG2543@1|root,KOG2543@2759|Eukaryota,38C97@33154|Opisthokonta,3NZQE@4751|Fungi,1GTHN@112252|Fungi incertae sedis
DescriptionOrigin recognition complex (ORC) subunit 5 C-terminus
COG categoryL
BRITEko00000,ko00001,ko00002,ko01009,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8212Gchil8212Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 694773..695543 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8212.t1.stop1Gchil8212.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 694773..694775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8212.t1.CDS1Gchil8212.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 694773..695543 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8212.t1.exon1Gchil8212.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 694773..695543 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8212.t1.start1Gchil8212.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 695541..695543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8212.t1Gchil8212.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 694773..695543 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8212.t1 ID=Gchil8212.t1|Name=Gchil8212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=257bp
MDYQKTENPKLAEKLYPGYVRAVVSVMYKTTTDLHELSVVCNKLFPDYMR
VVQEKNPTAAFNQVQTRLALALQSLYQRRLTAKDLKPSGTSSETTDVACD
DPNTSAKDAGYESSLSTAARAVLVAAFLASRNPPQHDLRFFSSSRTRGRR
RSSKSKKQEQQDRSFVLERLLAIFTSIAPDSLLRERGMDASESVSAFVST
SLLVQISTLVALGLLSSEAGVDILSEPKYRCNITKDTAFRIADSLNIGLD
QYLYVE*
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spliced messenger RNA

>Gchil8212.t1 ID=Gchil8212.t1|Name=Gchil8212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00004384_pilon:694773..695543- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTATCAGAAAACGGAAAATCCGAAATTGGCAGAAAAGCTTTATCC
TGGTTATGTCAGAGCTGTCGTCAGTGTTATGTACAAGACAACAACAGACC
TGCACGAACTATCAGTTGTATGCAACAAACTCTTTCCTGACTATATGAGG
GTGGTTCAAGAAAAAAATCCTACAGCAGCTTTCAATCAAGTCCAGACCCG
TTTGGCTCTTGCGCTACAGTCTTTGTATCAACGGAGATTAACTGCCAAAG
ACTTGAAACCAAGTGGAACAAGCAGTGAAACAACAGATGTAGCATGTGAC
GATCCAAACACATCCGCCAAAGACGCCGGGTACGAATCGTCGCTCTCGAC
GGCAGCCCGCGCTGTTCTCGTTGCTGCCTTTCTCGCTTCGCGAAATCCCC
CTCAACACGATCTTCGGTTCTTTTCGTCCAGTAGGACTCGGGGGCGACGG
AGGTCTTCGAAAAGTAAGAAGCAAGAGCAACAAGATCGATCGTTCGTCCT
TGAAAGATTACTGGCAATCTTTACATCTATTGCTCCCGATTCCCTCCTTC
GAGAAAGAGGGATGGACGCAAGCGAGAGCGTTTCAGCCTTTGTTTCTACG
AGTTTGCTTGTCCAGATTTCCACTCTTGTCGCTTTGGGCTTGCTGTCGAG
TGAAGCAGGAGTGGATATTTTGTCAGAACCGAAGTACAGATGCAACATTA
CGAAAGATACCGCATTTAGAATAGCGGATTCTCTTAACATTGGCCTTGAC
CAGTACTTGTATGTGGAATAA
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protein sequence of Gchil8212.t1

>Gchil8212.t1 ID=Gchil8212.t1|Name=Gchil8212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=257bp
MDYQKTENPKLAEKLYPGYVRAVVSVMYKTTTDLHELSVVCNKLFPDYMR
VVQEKNPTAAFNQVQTRLALALQSLYQRRLTAKDLKPSGTSSETTDVACD
DPNTSAKDAGYESSLSTAARAVLVAAFLASRNPPQHDLRFFSSSRTRGRR
RSSKSKKQEQQDRSFVLERLLAIFTSIAPDSLLRERGMDASESVSAFVST
SLLVQISTLVALGLLSSEAGVDILSEPKYRCNITKDTAFRIADSLNIGLD
QYLYVE*
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mRNA from alignment at tig00004384_pilon:694773..695543-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8212.t1 ID=Gchil8212.t1|Name=Gchil8212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00004384_pilon:694773..695543- (Gracilaria chilensis NLEC103_M9 male)
ATGGATTATCAGAAAACGGAAAATCCGAAATTGGCAGAAAAGCTTTATCC
TGGTTATGTCAGAGCTGTCGTCAGTGTTATGTACAAGACAACAACAGACC
TGCACGAACTATCAGTTGTATGCAACAAACTCTTTCCTGACTATATGAGG
GTGGTTCAAGAAAAAAATCCTACAGCAGCTTTCAATCAAGTCCAGACCCG
TTTGGCTCTTGCGCTACAGTCTTTGTATCAACGGAGATTAACTGCCAAAG
ACTTGAAACCAAGTGGAACAAGCAGTGAAACAACAGATGTAGCATGTGAC
GATCCAAACACATCCGCCAAAGACGCCGGGTACGAATCGTCGCTCTCGAC
GGCAGCCCGCGCTGTTCTCGTTGCTGCCTTTCTCGCTTCGCGAAATCCCC
CTCAACACGATCTTCGGTTCTTTTCGTCCAGTAGGACTCGGGGGCGACGG
AGGTCTTCGAAAAGTAAGAAGCAAGAGCAACAAGATCGATCGTTCGTCCT
TGAAAGATTACTGGCAATCTTTACATCTATTGCTCCCGATTCCCTCCTTC
GAGAAAGAGGGATGGACGCAAGCGAGAGCGTTTCAGCCTTTGTTTCTACG
AGTTTGCTTGTCCAGATTTCCACTCTTGTCGCTTTGGGCTTGCTGTCGAG
TGAAGCAGGAGTGGATATTTTGTCAGAACCGAAGTACAGATGCAACATTA
CGAAAGATACCGCATTTAGAATAGCGGATTCTCTTAACATTGGCCTTGAC
CAGTACTTGTATGTGGAATAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:694773..695543-

>Gchil8212.t1 ID=Gchil8212.t1|Name=Gchil8212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00004384_pilon:694773..695543- (Gracilaria chilensis NLEC103_M9 male)
ATGGATTATCAGAAAACGGAAAATCCGAAATTGGCAGAAAAGCTTTATCC
TGGTTATGTCAGAGCTGTCGTCAGTGTTATGTACAAGACAACAACAGACC
TGCACGAACTATCAGTTGTATGCAACAAACTCTTTCCTGACTATATGAGG
GTGGTTCAAGAAAAAAATCCTACAGCAGCTTTCAATCAAGTCCAGACCCG
TTTGGCTCTTGCGCTACAGTCTTTGTATCAACGGAGATTAACTGCCAAAG
ACTTGAAACCAAGTGGAACAAGCAGTGAAACAACAGATGTAGCATGTGAC
GATCCAAACACATCCGCCAAAGACGCCGGGTACGAATCGTCGCTCTCGAC
GGCAGCCCGCGCTGTTCTCGTTGCTGCCTTTCTCGCTTCGCGAAATCCCC
CTCAACACGATCTTCGGTTCTTTTCGTCCAGTAGGACTCGGGGGCGACGG
AGGTCTTCGAAAAGTAAGAAGCAAGAGCAACAAGATCGATCGTTCGTCCT
TGAAAGATTACTGGCAATCTTTACATCTATTGCTCCCGATTCCCTCCTTC
GAGAAAGAGGGATGGACGCAAGCGAGAGCGTTTCAGCCTTTGTTTCTACG
AGTTTGCTTGTCCAGATTTCCACTCTTGTCGCTTTGGGCTTGCTGTCGAG
TGAAGCAGGAGTGGATATTTTGTCAGAACCGAAGTACAGATGCAACATTA
CGAAAGATACCGCATTTAGAATAGCGGATTCTCTTAACATTGGCCTTGAC
CAGTACTTGTATGTGGAATAA
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