Gchil3892.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3892.t1
Unique NameGchil3892.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length473
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1271773..1273191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3892Gchil3892Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1271773..1273191 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3892.t1.start1Gchil3892.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1271773..1271775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3892.t1.CDS1Gchil3892.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1271773..1273191 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3892.t1.exon1Gchil3892.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1271773..1273191 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3892.t1.stop1Gchil3892.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1273189..1273191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3892.t1Gchil3892.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1271773..1273191 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3892.t1 ID=Gchil3892.t1|Name=Gchil3892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=473bp
MGKKKPGQSKNKVVLSLAEFTQDVPKAGVDPDLASLPTAPKAPEEWEAEG
GRPEYNSRGYKERINRERNYDADADFDDRDWTRRGPLDEAAGSAFGAGPE
RDWNDIRRGPMDTEDAAAPERNWDGMRRGPVESSFESSHVERDWGARKGP
IEAEVSATRNISDDQWGSARQGPIEAEFSQQKAEPDWNSRRPVDASGASS
NAQADWSARKGPVEAEFAAETKERDWGARKGPIEAETTKNSTEGNWADVR
RRPVESTFPRQQVEVDWTRKGPIEPEVEKVRKAVRDVDFSDSRGARLQEL
QDNREEGQTPTEKESSMSRENWRRDTAGMTERRSRQNTRNIGNPPPKPAV
GPSDRDWGAARQRSHPIEARVSSPRKDFSRESGPQQEATEEVARISDTQA
PRDESDWTTVRSNPRRPAGSNRRNSGRGFNKRGPRTVARDGKSESEPRSE
FSGKEKESHSTERPMASAVTDA*
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spliced messenger RNA

>Gchil3892.t1 ID=Gchil3892.t1|Name=Gchil3892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1419bp|location=Sequence derived from alignment at tig00000010_pilon:1271773..1273191+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAAGAAAAAACCCGGACAGAGCAAGAACAAGGTGGTGCTTTCGCT
TGCAGAATTCACACAGGATGTACCCAAAGCCGGGGTAGACCCCGACCTTG
CCTCACTACCCACAGCTCCCAAAGCCCCCGAGGAATGGGAAGCTGAAGGA
GGACGCCCGGAGTACAACTCGCGCGGTTACAAAGAAAGAATCAACAGGGA
ACGTAACTACGATGCAGATGCGGACTTTGACGACCGTGACTGGACGCGCA
GAGGACCTCTCGATGAGGCTGCCGGCTCTGCCTTCGGCGCTGGTCCGGAA
AGAGACTGGAATGATATTCGTCGCGGCCCCATGGACACCGAAGACGCTGC
TGCCCCAGAGCGCAATTGGGATGGAATGCGAAGAGGCCCAGTCGAATCAT
CATTTGAATCCAGTCATGTGGAGCGCGATTGGGGCGCGCGAAAAGGTCCT
ATCGAGGCCGAAGTCTCGGCGACGAGAAACATATCAGACGACCAATGGGG
TAGTGCTCGACAAGGACCAATTGAAGCAGAGTTTTCGCAGCAAAAGGCAG
AGCCGGATTGGAATTCACGTCGCCCTGTCGACGCGAGTGGTGCGTCGTCT
AATGCTCAGGCGGATTGGTCGGCTCGCAAGGGACCAGTTGAAGCTGAATT
CGCCGCAGAAACGAAAGAGCGAGATTGGGGTGCTAGGAAAGGTCCAATTG
AGGCGGAAACAACGAAGAACAGCACGGAAGGGAATTGGGCAGACGTTCGA
AGACGCCCTGTGGAGTCAACGTTTCCTCGTCAACAGGTAGAAGTAGATTG
GACTAGAAAGGGACCAATTGAGCCTGAGGTGGAAAAGGTTAGAAAAGCTG
TTCGAGATGTAGACTTTTCGGACAGCCGTGGAGCTCGATTACAGGAACTG
CAAGACAATCGGGAAGAAGGCCAAACCCCAACTGAGAAGGAATCATCAAT
GTCCCGAGAAAATTGGCGTCGGGACACTGCTGGAATGACCGAAAGAAGAT
CCAGACAAAACACACGTAACATCGGAAATCCACCCCCAAAGCCTGCTGTG
GGACCGAGCGATAGAGACTGGGGAGCAGCAAGGCAGCGATCTCATCCAAT
CGAAGCGAGAGTAAGCTCCCCGCGCAAAGATTTCTCGCGTGAAAGTGGCC
CCCAGCAGGAAGCAACTGAAGAAGTGGCGAGGATTTCGGACACACAGGCT
CCGCGAGATGAAAGCGATTGGACCACAGTTCGTTCCAATCCACGTCGCCC
TGCCGGATCAAATCGTCGCAATTCAGGCCGGGGGTTTAATAAACGAGGTC
CTCGTACCGTCGCAAGGGACGGTAAGAGCGAGAGCGAACCGCGAAGCGAG
TTTTCCGGAAAAGAAAAAGAGAGTCACAGCACTGAAAGACCTATGGCTTC
GGCGGTAACTGATGCCTAA
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protein sequence of Gchil3892.t1

>Gchil3892.t1 ID=Gchil3892.t1|Name=Gchil3892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=473bp
MGKKKPGQSKNKVVLSLAEFTQDVPKAGVDPDLASLPTAPKAPEEWEAEG
GRPEYNSRGYKERINRERNYDADADFDDRDWTRRGPLDEAAGSAFGAGPE
RDWNDIRRGPMDTEDAAAPERNWDGMRRGPVESSFESSHVERDWGARKGP
IEAEVSATRNISDDQWGSARQGPIEAEFSQQKAEPDWNSRRPVDASGASS
NAQADWSARKGPVEAEFAAETKERDWGARKGPIEAETTKNSTEGNWADVR
RRPVESTFPRQQVEVDWTRKGPIEPEVEKVRKAVRDVDFSDSRGARLQEL
QDNREEGQTPTEKESSMSRENWRRDTAGMTERRSRQNTRNIGNPPPKPAV
GPSDRDWGAARQRSHPIEARVSSPRKDFSRESGPQQEATEEVARISDTQA
PRDESDWTTVRSNPRRPAGSNRRNSGRGFNKRGPRTVARDGKSESEPRSE
FSGKEKESHSTERPMASAVTDA*
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mRNA from alignment at tig00000010_pilon:1271773..1273191+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3892.t1 ID=Gchil3892.t1|Name=Gchil3892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1419bp|location=Sequence derived from alignment at tig00000010_pilon:1271773..1273191+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGAAGAAAAAACCCGGACAGAGCAAGAACAAGGTGGTGCTTTCGCT
TGCAGAATTCACACAGGATGTACCCAAAGCCGGGGTAGACCCCGACCTTG
CCTCACTACCCACAGCTCCCAAAGCCCCCGAGGAATGGGAAGCTGAAGGA
GGACGCCCGGAGTACAACTCGCGCGGTTACAAAGAAAGAATCAACAGGGA
ACGTAACTACGATGCAGATGCGGACTTTGACGACCGTGACTGGACGCGCA
GAGGACCTCTCGATGAGGCTGCCGGCTCTGCCTTCGGCGCTGGTCCGGAA
AGAGACTGGAATGATATTCGTCGCGGCCCCATGGACACCGAAGACGCTGC
TGCCCCAGAGCGCAATTGGGATGGAATGCGAAGAGGCCCAGTCGAATCAT
CATTTGAATCCAGTCATGTGGAGCGCGATTGGGGCGCGCGAAAAGGTCCT
ATCGAGGCCGAAGTCTCGGCGACGAGAAACATATCAGACGACCAATGGGG
TAGTGCTCGACAAGGACCAATTGAAGCAGAGTTTTCGCAGCAAAAGGCAG
AGCCGGATTGGAATTCACGTCGCCCTGTCGACGCGAGTGGTGCGTCGTCT
AATGCTCAGGCGGATTGGTCGGCTCGCAAGGGACCAGTTGAAGCTGAATT
CGCCGCAGAAACGAAAGAGCGAGATTGGGGTGCTAGGAAAGGTCCAATTG
AGGCGGAAACAACGAAGAACAGCACGGAAGGGAATTGGGCAGACGTTCGA
AGACGCCCTGTGGAGTCAACGTTTCCTCGTCAACAGGTAGAAGTAGATTG
GACTAGAAAGGGACCAATTGAGCCTGAGGTGGAAAAGGTTAGAAAAGCTG
TTCGAGATGTAGACTTTTCGGACAGCCGTGGAGCTCGATTACAGGAACTG
CAAGACAATCGGGAAGAAGGCCAAACCCCAACTGAGAAGGAATCATCAAT
GTCCCGAGAAAATTGGCGTCGGGACACTGCTGGAATGACCGAAAGAAGAT
CCAGACAAAACACACGTAACATCGGAAATCCACCCCCAAAGCCTGCTGTG
GGACCGAGCGATAGAGACTGGGGAGCAGCAAGGCAGCGATCTCATCCAAT
CGAAGCGAGAGTAAGCTCCCCGCGCAAAGATTTCTCGCGTGAAAGTGGCC
CCCAGCAGGAAGCAACTGAAGAAGTGGCGAGGATTTCGGACACACAGGCT
CCGCGAGATGAAAGCGATTGGACCACAGTTCGTTCCAATCCACGTCGCCC
TGCCGGATCAAATCGTCGCAATTCAGGCCGGGGGTTTAATAAACGAGGTC
CTCGTACCGTCGCAAGGGACGGTAAGAGCGAGAGCGAACCGCGAAGCGAG
TTTTCCGGAAAAGAAAAAGAGAGTCACAGCACTGAAAGACCTATGGCTTC
GGCGGTAACTGATGCCTAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1271773..1273191+

>Gchil3892.t1 ID=Gchil3892.t1|Name=Gchil3892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1419bp|location=Sequence derived from alignment at tig00000010_pilon:1271773..1273191+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGAAGAAAAAACCCGGACAGAGCAAGAACAAGGTGGTGCTTTCGCT
TGCAGAATTCACACAGGATGTACCCAAAGCCGGGGTAGACCCCGACCTTG
CCTCACTACCCACAGCTCCCAAAGCCCCCGAGGAATGGGAAGCTGAAGGA
GGACGCCCGGAGTACAACTCGCGCGGTTACAAAGAAAGAATCAACAGGGA
ACGTAACTACGATGCAGATGCGGACTTTGACGACCGTGACTGGACGCGCA
GAGGACCTCTCGATGAGGCTGCCGGCTCTGCCTTCGGCGCTGGTCCGGAA
AGAGACTGGAATGATATTCGTCGCGGCCCCATGGACACCGAAGACGCTGC
TGCCCCAGAGCGCAATTGGGATGGAATGCGAAGAGGCCCAGTCGAATCAT
CATTTGAATCCAGTCATGTGGAGCGCGATTGGGGCGCGCGAAAAGGTCCT
ATCGAGGCCGAAGTCTCGGCGACGAGAAACATATCAGACGACCAATGGGG
TAGTGCTCGACAAGGACCAATTGAAGCAGAGTTTTCGCAGCAAAAGGCAG
AGCCGGATTGGAATTCACGTCGCCCTGTCGACGCGAGTGGTGCGTCGTCT
AATGCTCAGGCGGATTGGTCGGCTCGCAAGGGACCAGTTGAAGCTGAATT
CGCCGCAGAAACGAAAGAGCGAGATTGGGGTGCTAGGAAAGGTCCAATTG
AGGCGGAAACAACGAAGAACAGCACGGAAGGGAATTGGGCAGACGTTCGA
AGACGCCCTGTGGAGTCAACGTTTCCTCGTCAACAGGTAGAAGTAGATTG
GACTAGAAAGGGACCAATTGAGCCTGAGGTGGAAAAGGTTAGAAAAGCTG
TTCGAGATGTAGACTTTTCGGACAGCCGTGGAGCTCGATTACAGGAACTG
CAAGACAATCGGGAAGAAGGCCAAACCCCAACTGAGAAGGAATCATCAAT
GTCCCGAGAAAATTGGCGTCGGGACACTGCTGGAATGACCGAAAGAAGAT
CCAGACAAAACACACGTAACATCGGAAATCCACCCCCAAAGCCTGCTGTG
GGACCGAGCGATAGAGACTGGGGAGCAGCAAGGCAGCGATCTCATCCAAT
CGAAGCGAGAGTAAGCTCCCCGCGCAAAGATTTCTCGCGTGAAAGTGGCC
CCCAGCAGGAAGCAACTGAAGAAGTGGCGAGGATTTCGGACACACAGGCT
CCGCGAGATGAAAGCGATTGGACCACAGTTCGTTCCAATCCACGTCGCCC
TGCCGGATCAAATCGTCGCAATTCAGGCCGGGGGTTTAATAAACGAGGTC
CTCGTACCGTCGCAAGGGACGGTAAGAGCGAGAGCGAACCGCGAAGCGAG
TTTTCCGGAAAAGAAAAAGAGAGTCACAGCACTGAAAGACCTATGGCTTC
GGCGGTAACTGATGCCTAA
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