Gchil8227.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8227.t1
Unique NameGchil8227.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:746565..747411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S272_35V6.1
Max annot lvl35493|Streptophyta
Evalue2.33e-13
EggNOG OGs2C2SU@1|root,2QQT0@2759|Eukaryota,37QMH@33090|Viridiplantae,3GBM5@35493|Streptophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8227Gchil8227Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 746565..747411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8227.t1Gchil8227.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 746565..747411 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8227.t1.stop1Gchil8227.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 746565..746567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8227.t1.CDS1Gchil8227.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 746565..747175 -
Gchil8227.t1.CDS2Gchil8227.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 747264..747411 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8227.t1.exon1Gchil8227.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 746565..747175 -
Gchil8227.t1.exon2Gchil8227.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 747264..747411 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8227.t1.intron1Gchil8227.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 747176..747263 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8227.t1.start1Gchil8227.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 747409..747411 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8227.t1 ID=Gchil8227.t1|Name=Gchil8227.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=253bp
MDAPSQTIWPQLAIVAAVAASHMSMPNHWLPYSLVARAHSWSVRKALLLT
ALGAAGHVTATIAISLLISGIGAAFISHQQYRVLSSALLFVWGLYYLYSY
FSKRKTTCCESSEKLPTLSKSQNVQKGDSSAVQRTAAISLVMLTTLSPCV
GSMPVLVTLMAPPVAPSTVMLAAAVLFLTSMSVCCALVALSLLGASTMEC
TAVRKHERLILAAGLILLAALTFFVFTDDHEHHHHHGVQPLDQHNHHVHA
HQ*
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spliced messenger RNA

>Gchil8227.t1 ID=Gchil8227.t1|Name=Gchil8227.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00004384_pilon:746565..747411- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCGCCCTCGCAGACAATATGGCCGCAATTGGCCATCGTAGCCGC
TGTCGCTGCGTCACATATGTCAATGCCTAACCACTGGCTCCCATATTCTC
TAGTGGCGCGCGCACATTCCTGGAGCGTTCGCAAGGCTTTACTCCTGACT
GCGTTAGGCGCCGCCGGGCATGTAACAGCAACCATAGCTATTTCTCTTCT
CATCTCTGGGATCGGTGCTGCGTTTATTTCCCATCAACAGTATCGAGTTC
TTTCTAGTGCGCTGTTATTTGTGTGGGGTTTGTACTATCTGTATTCTTAC
TTTTCGAAACGAAAGACTACATGTTGCGAATCGTCTGAGAAGCTCCCTAC
CCTTTCAAAGTCACAAAATGTACAAAAGGGCGATTCTTCGGCTGTTCAAC
GAACGGCGGCAATATCTCTTGTTATGCTAACTACATTATCTCCTTGCGTG
GGTTCGATGCCGGTACTCGTCACGTTGATGGCGCCGCCTGTAGCTCCTTC
TACTGTGATGCTTGCCGCGGCTGTCCTGTTCCTCACTTCCATGTCTGTTT
GTTGCGCATTGGTGGCACTTTCTCTTTTGGGAGCCTCAACCATGGAATGC
ACAGCTGTTAGAAAACATGAGCGTCTTATTCTTGCTGCTGGTCTCATTCT
ACTTGCGGCTCTTACTTTCTTTGTGTTTACTGACGATCATGAACACCATC
ATCACCACGGCGTGCAGCCACTTGATCAGCATAATCATCATGTTCATGCG
CACCAATGA
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protein sequence of Gchil8227.t1

>Gchil8227.t1 ID=Gchil8227.t1|Name=Gchil8227.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=253bp
MDAPSQTIWPQLAIVAAVAASHMSMPNHWLPYSLVARAHSWSVRKALLLT
ALGAAGHVTATIAISLLISGIGAAFISHQQYRVLSSALLFVWGLYYLYSY
FSKRKTTCCESSEKLPTLSKSQNVQKGDSSAVQRTAAISLVMLTTLSPCV
GSMPVLVTLMAPPVAPSTVMLAAAVLFLTSMSVCCALVALSLLGASTMEC
TAVRKHERLILAAGLILLAALTFFVFTDDHEHHHHHGVQPLDQHNHHVHA
HQ*
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mRNA from alignment at tig00004384_pilon:746565..747411-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8227.t1 ID=Gchil8227.t1|Name=Gchil8227.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=847bp|location=Sequence derived from alignment at tig00004384_pilon:746565..747411- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGCGCCCTCGCAGACAATATGGCCGCAATTGGCCATCGTAGCCGC
TGTCGCTGCGTCACATATGTCAATGCCTAACCACTGGCTCCCATATTCTC
TAGTGGCGCGCGCACATTCCTGGAGCGTTCGCAAGGCTTTACTCCTGAGT
ACGCTACGCTTCTCGGATTTAGTGTCTTTCATCATTTGTCTTCTGCCTTC
CTGACATTATCTCTGTGCTTTTTGCCAAATGAAAAGCTGCGTTAGGCGCC
GCCGGGCATGTAACAGCAACCATAGCTATTTCTCTTCTCATCTCTGGGAT
CGGTGCTGCGTTTATTTCCCATCAACAGTATCGAGTTCTTTCTAGTGCGC
TGTTATTTGTGTGGGGTTTGTACTATCTGTATTCTTACTTTTCGAAACGA
AAGACTACATGTTGCGAATCGTCTGAGAAGCTCCCTACCCTTTCAAAGTC
ACAAAATGTACAAAAGGGCGATTCTTCGGCTGTTCAACGAACGGCGGCAA
TATCTCTTGTTATGCTAACTACATTATCTCCTTGCGTGGGTTCGATGCCG
GTACTCGTCACGTTGATGGCGCCGCCTGTAGCTCCTTCTACTGTGATGCT
TGCCGCGGCTGTCCTGTTCCTCACTTCCATGTCTGTTTGTTGCGCATTGG
TGGCACTTTCTCTTTTGGGAGCCTCAACCATGGAATGCACAGCTGTTAGA
AAACATGAGCGTCTTATTCTTGCTGCTGGTCTCATTCTACTTGCGGCTCT
TACTTTCTTTGTGTTTACTGACGATCATGAACACCATCATCACCACGGCG
TGCAGCCACTTGATCAGCATAATCATCATGTTCATGCGCACCAATGA
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Coding sequence (CDS) from alignment at tig00004384_pilon:746565..747411-

>Gchil8227.t1 ID=Gchil8227.t1|Name=Gchil8227.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00004384_pilon:746565..747411- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGCGCCCTCGCAGACAATATGGCCGCAATTGGCCATCGTAGCCGC
TGTCGCTGCGTCACATATGTCAATGCCTAACCACTGGCTCCCATATTCTC
TAGTGGCGCGCGCACATTCCTGGAGCGTTCGCAAGGCTTTACTCCTGACT
GCGTTAGGCGCCGCCGGGCATGTAACAGCAACCATAGCTATTTCTCTTCT
CATCTCTGGGATCGGTGCTGCGTTTATTTCCCATCAACAGTATCGAGTTC
TTTCTAGTGCGCTGTTATTTGTGTGGGGTTTGTACTATCTGTATTCTTAC
TTTTCGAAACGAAAGACTACATGTTGCGAATCGTCTGAGAAGCTCCCTAC
CCTTTCAAAGTCACAAAATGTACAAAAGGGCGATTCTTCGGCTGTTCAAC
GAACGGCGGCAATATCTCTTGTTATGCTAACTACATTATCTCCTTGCGTG
GGTTCGATGCCGGTACTCGTCACGTTGATGGCGCCGCCTGTAGCTCCTTC
TACTGTGATGCTTGCCGCGGCTGTCCTGTTCCTCACTTCCATGTCTGTTT
GTTGCGCATTGGTGGCACTTTCTCTTTTGGGAGCCTCAACCATGGAATGC
ACAGCTGTTAGAAAACATGAGCGTCTTATTCTTGCTGCTGGTCTCATTCT
ACTTGCGGCTCTTACTTTCTTTGTGTTTACTGACGATCATGAACACCATC
ATCACCACGGCGTGCAGCCACTTGATCAGCATAATCATCATGTTCATGCG
CACCAATGA
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