Gchil8152.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8152.t1
Unique NameGchil8152.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:325920..326545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G7U8
PFAMsPentapeptide
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009543,GO:0009579,GO:0016020,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Evalue5.67e-21
EggNOG OGsCOG1357@1|root,2QQA1@2759|Eukaryota
DescriptionPentapeptide repeats (9 copies)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8152Gchil8152Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 325920..326545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8152.t1Gchil8152.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 325920..326545 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8152.t1.start1Gchil8152.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 325920..325922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8152.t1.CDS1Gchil8152.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 325920..326222 +
Gchil8152.t1.CDS2Gchil8152.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 326321..326545 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8152.t1.exon1Gchil8152.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 325920..326222 +
Gchil8152.t1.exon2Gchil8152.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 326321..326545 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8152.t1.intron1Gchil8152.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 326223..326320 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8152.t1.stop1Gchil8152.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 326543..326545 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8152.t1 ID=Gchil8152.t1|Name=Gchil8152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=176bp
MATNASHSMASETVRPLLKVPGGSASTSAGVSGTRSVVKTVTRGVNLEGA
DFSNQDFEGVSFQQSILRQANFRYCNLRNASFFDADVSGANFSNSDLRGA
NFELANMRLADLTGANLSEAYISSTTKFDGAIIDDTDWTDTLLRKDTQAY
LCKMATGTNPRTGVDTRESLLCPID*
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spliced messenger RNA

>Gchil8152.t1 ID=Gchil8152.t1|Name=Gchil8152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00004384_pilon:325920..326545+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACGAACGCATCGCATTCGATGGCTTCGGAGACTGTTCGACCGCT
TCTGAAAGTTCCGGGCGGTTCGGCCAGTACTTCCGCGGGTGTATCTGGAA
CTCGCTCAGTTGTTAAAACAGTTACTCGTGGCGTCAACTTGGAAGGAGCA
GACTTTTCAAATCAGGACTTCGAAGGCGTATCTTTCCAACAGTCCATATT
GCGTCAAGCCAACTTTAGATATTGCAACCTACGAAATGCGTCCTTCTTTG
ATGCTGATGTTTCCGGGGCAAACTTTTCGAATTCTGATTTGCGAGGCGCC
AACTTTGAGCTTGCAAATATGAGACTAGCTGATTTGACCGGTGCCAACCT
TTCGGAGGCATACATCAGTTCGACAACCAAGTTTGATGGAGCAATTATTG
ATGACACTGATTGGACAGATACTCTTCTTCGCAAAGACACCCAAGCTTAT
CTGTGCAAAATGGCTACAGGGACAAATCCTCGAACTGGAGTAGATACTCG
AGAAAGCTTGTTATGTCCTATTGATTAG
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protein sequence of Gchil8152.t1

>Gchil8152.t1 ID=Gchil8152.t1|Name=Gchil8152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=176bp
MATNASHSMASETVRPLLKVPGGSASTSAGVSGTRSVVKTVTRGVNLEGA
DFSNQDFEGVSFQQSILRQANFRYCNLRNASFFDADVSGANFSNSDLRGA
NFELANMRLADLTGANLSEAYISSTTKFDGAIIDDTDWTDTLLRKDTQAY
LCKMATGTNPRTGVDTRESLLCPID*
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mRNA from alignment at tig00004384_pilon:325920..326545+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8152.t1 ID=Gchil8152.t1|Name=Gchil8152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=626bp|location=Sequence derived from alignment at tig00004384_pilon:325920..326545+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACGAACGCATCGCATTCGATGGCTTCGGAGACTGTTCGACCGCT
TCTGAAAGTTCCGGGCGGTTCGGCCAGTACTTCCGCGGGTGTATCTGGAA
CTCGCTCAGTTGTTAAAACAGTTACTCGTGGCGTCAACTTGGAAGGAGCA
GACTTTTCAAATCAGGACTTCGAAGGCGTATCTTTCCAACAGTCCATATT
GCGTCAAGCCAACTTTAGATATTGCAACCTACGAAATGCGTCCTTCTTTG
ATGCTGATGTTTCCGGGGCAAACTTTTCGAATTCTGATTTGCGAGGCGCC
AACGTAAGTTGAAGTATTAACAAAATCCTGCGTCGAACATGAAAGAAAGG
GTATTCTAACTTACATTATCGCGTTTCCCCAATTCGTCTTTCGGTCGAAA
GTTTGAGCTTGCAAATATGAGACTAGCTGATTTGACCGGTGCCAACCTTT
CGGAGGCATACATCAGTTCGACAACCAAGTTTGATGGAGCAATTATTGAT
GACACTGATTGGACAGATACTCTTCTTCGCAAAGACACCCAAGCTTATCT
GTGCAAAATGGCTACAGGGACAAATCCTCGAACTGGAGTAGATACTCGAG
AAAGCTTGTTATGTCCTATTGATTAG
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Coding sequence (CDS) from alignment at tig00004384_pilon:325920..326545+

>Gchil8152.t1 ID=Gchil8152.t1|Name=Gchil8152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=528bp|location=Sequence derived from alignment at tig00004384_pilon:325920..326545+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACGAACGCATCGCATTCGATGGCTTCGGAGACTGTTCGACCGCT
TCTGAAAGTTCCGGGCGGTTCGGCCAGTACTTCCGCGGGTGTATCTGGAA
CTCGCTCAGTTGTTAAAACAGTTACTCGTGGCGTCAACTTGGAAGGAGCA
GACTTTTCAAATCAGGACTTCGAAGGCGTATCTTTCCAACAGTCCATATT
GCGTCAAGCCAACTTTAGATATTGCAACCTACGAAATGCGTCCTTCTTTG
ATGCTGATGTTTCCGGGGCAAACTTTTCGAATTCTGATTTGCGAGGCGCC
AACTTTGAGCTTGCAAATATGAGACTAGCTGATTTGACCGGTGCCAACCT
TTCGGAGGCATACATCAGTTCGACAACCAAGTTTGATGGAGCAATTATTG
ATGACACTGATTGGACAGATACTCTTCTTCGCAAAGACACCCAAGCTTAT
CTGTGCAAAATGGCTACAGGGACAAATCCTCGAACTGGAGTAGATACTCG
AGAAAGCTTGTTATGTCCTATTGATTAG
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