Gchil8290.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8290.t1
Unique NameGchil8290.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length555
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1170917..1172751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8290Gchil8290Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 1170917..1172751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8290.t1Gchil8290.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 1170917..1172751 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8290.t1.start1Gchil8290.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 1170917..1170919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8290.t1.CDS1Gchil8290.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1170917..1172187 +
Gchil8290.t1.CDS2Gchil8290.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1172278..1172598 +
Gchil8290.t1.CDS3Gchil8290.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1172679..1172751 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8290.t1.exon1Gchil8290.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1170917..1172187 +
Gchil8290.t1.exon2Gchil8290.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1172278..1172598 +
Gchil8290.t1.exon3Gchil8290.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1172679..1172751 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8290.t1.intron1Gchil8290.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 1172188..1172277 +
Gchil8290.t1.intron2Gchil8290.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 1172599..1172678 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8290.t1.stop1Gchil8290.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 1172749..1172751 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8290.t1 ID=Gchil8290.t1|Name=Gchil8290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=555bp
MNLRERLAALRSRRTSSKLDIPSQLVLNSPSPKGTPSKKSRLHSEAARRQ
WHQQQLHNAARKARQNVMETGLYDVLTRAPPPEKVVPPLVKEEKQADAQP
SDSEDEDEEGEHVEIDEEQMEIYEEERALQHANRQLLFDDHSVPESSKLS
LDQPRKDITAHSCEKKVVLESPDTAELQYSEQVDDPDPIHKEQPTTNMTT
SPVSVPDHPPSFAGPNALQSGPHQSQQLKEQHTVSKENNRSPQNEDPTIS
SVKANTRLAPLQDTSPQTPDQPALKGAEKKDALRFLCNDRLSNPLGIVDE
EADEENAGGNGAVSHELEAIDSDGDDDCIDHDEVAPSAIDRNNLAQFHRM
WQLDKDKNDLAVAAAGGVVDDIDDAVDLTELLHKEEQTAKDNESEHDGSV
FGAAPVSNEVDETKQQSEQYMEQMFQRDDSRSRIIDNINEDAEDDQKREK
ARALWKARQKAKAILQRDNDSLSKFDLFDSNSKSRSADFRQKLEKTCRRS
SPHLQSRNENNKRNNSWLAESTLSAWEKQRREDTKEECANAYPKLGRSLC
EQSE*
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spliced messenger RNA

>Gchil8290.t1 ID=Gchil8290.t1|Name=Gchil8290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1665bp|location=Sequence derived from alignment at tig00004384_pilon:1170917..1172751+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCTACGTGAACGACTGGCCGCGCTGCGGTCGCGACGCACGTCTAG
CAAGTTGGACATACCATCGCAATTAGTCCTCAACTCCCCCTCCCCAAAAG
GCACCCCCTCCAAGAAAAGTCGTCTACACAGCGAGGCAGCCCGTAGACAG
TGGCATCAACAACAGCTCCACAATGCAGCCAGAAAGGCACGCCAAAATGT
TATGGAAACTGGCCTTTACGATGTGCTCACCAGAGCACCCCCCCCGGAAA
AGGTTGTGCCCCCGCTTGTTAAGGAAGAGAAACAGGCCGATGCTCAACCC
AGTGACTCTGAAGACGAGGATGAAGAAGGAGAGCACGTTGAAATTGACGA
GGAGCAGATGGAAATTTATGAAGAAGAACGTGCTCTGCAGCATGCAAATC
GACAGTTGTTGTTCGATGACCACTCTGTACCGGAAAGTTCTAAACTCAGC
TTAGACCAACCGCGGAAAGATATTACCGCTCATAGCTGCGAGAAAAAGGT
TGTGTTGGAGTCACCAGATACCGCCGAGCTTCAATATTCCGAGCAAGTCG
ATGACCCTGACCCCATACATAAAGAACAGCCCACAACCAACATGACCACA
TCTCCAGTCAGTGTTCCCGACCATCCACCGTCTTTTGCAGGACCTAACGC
ATTGCAGTCTGGTCCACACCAATCCCAGCAATTGAAGGAACAACATACAG
TGTCCAAGGAGAACAACCGCTCTCCTCAGAATGAAGACCCCACCATCTCT
TCTGTCAAAGCCAACACACGACTTGCGCCACTACAGGACACATCACCTCA
GACCCCGGACCAGCCGGCTCTGAAAGGAGCGGAGAAAAAAGACGCTCTAC
GCTTTCTCTGCAACGACCGTCTGTCTAATCCGTTGGGCATAGTGGATGAA
GAAGCCGATGAAGAAAACGCCGGCGGCAATGGTGCAGTGAGTCACGAATT
AGAAGCTATAGATAGCGATGGTGATGATGATTGCATTGACCATGATGAAG
TCGCTCCGAGTGCAATTGACAGAAATAACCTCGCTCAGTTTCATCGCATG
TGGCAACTAGACAAAGATAAGAACGATCTTGCGGTCGCAGCCGCAGGAGG
TGTGGTGGACGATATTGACGACGCTGTGGACCTCACAGAACTGTTGCACA
AGGAGGAACAAACCGCTAAAGACAACGAAAGTGAACATGATGGCAGCGTA
TTTGGTGCAGCTCCAGTTTCAAATGAAGTTGATGAGACAAAACAACAATC
AGAGCAATACATGGAGCAAATGTTTCAACGAGATGATAGCCGTTCAAGAA
TCATTGACAATATCAATGAGGATGCAGAAGATGATCAGAAGCGTGAAAAA
GCCCGTGCGTTATGGAAAGCACGTCAAAAAGCAAAAGCGATTCTTCAACG
AGATAACGACAGCCTATCAAAGTTTGATTTGTTCGACAGCAACTCAAAAT
CTCGAAGCGCCGACTTTCGTCAGAAGCTCGAAAAGACATGTCGTCGCTCT
TCACCACATCTACAATCTAGGAACGAAAACAACAAGCGCAATAACTCCTG
GTTGGCGGAAAGCACCTTGTCCGCTTGGGAGAAACAGCGCAGAGAAGACA
CCAAAGAAGAGTGCGCGAACGCCTACCCCAAGCTTGGGCGCTCCTTGTGT
GAGCAGTCGGAGTAG
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protein sequence of Gchil8290.t1

>Gchil8290.t1 ID=Gchil8290.t1|Name=Gchil8290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=555bp
MNLRERLAALRSRRTSSKLDIPSQLVLNSPSPKGTPSKKSRLHSEAARRQ
WHQQQLHNAARKARQNVMETGLYDVLTRAPPPEKVVPPLVKEEKQADAQP
SDSEDEDEEGEHVEIDEEQMEIYEEERALQHANRQLLFDDHSVPESSKLS
LDQPRKDITAHSCEKKVVLESPDTAELQYSEQVDDPDPIHKEQPTTNMTT
SPVSVPDHPPSFAGPNALQSGPHQSQQLKEQHTVSKENNRSPQNEDPTIS
SVKANTRLAPLQDTSPQTPDQPALKGAEKKDALRFLCNDRLSNPLGIVDE
EADEENAGGNGAVSHELEAIDSDGDDDCIDHDEVAPSAIDRNNLAQFHRM
WQLDKDKNDLAVAAAGGVVDDIDDAVDLTELLHKEEQTAKDNESEHDGSV
FGAAPVSNEVDETKQQSEQYMEQMFQRDDSRSRIIDNINEDAEDDQKREK
ARALWKARQKAKAILQRDNDSLSKFDLFDSNSKSRSADFRQKLEKTCRRS
SPHLQSRNENNKRNNSWLAESTLSAWEKQRREDTKEECANAYPKLGRSLC
EQSE*
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mRNA from alignment at tig00004384_pilon:1170917..1172751+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8290.t1 ID=Gchil8290.t1|Name=Gchil8290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1835bp|location=Sequence derived from alignment at tig00004384_pilon:1170917..1172751+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCTACGTGAACGACTGGCCGCGCTGCGGTCGCGACGCACGTCTAG
CAAGTTGGACATACCATCGCAATTAGTCCTCAACTCCCCCTCCCCAAAAG
GCACCCCCTCCAAGAAAAGTCGTCTACACAGCGAGGCAGCCCGTAGACAG
TGGCATCAACAACAGCTCCACAATGCAGCCAGAAAGGCACGCCAAAATGT
TATGGAAACTGGCCTTTACGATGTGCTCACCAGAGCACCCCCCCCGGAAA
AGGTTGTGCCCCCGCTTGTTAAGGAAGAGAAACAGGCCGATGCTCAACCC
AGTGACTCTGAAGACGAGGATGAAGAAGGAGAGCACGTTGAAATTGACGA
GGAGCAGATGGAAATTTATGAAGAAGAACGTGCTCTGCAGCATGCAAATC
GACAGTTGTTGTTCGATGACCACTCTGTACCGGAAAGTTCTAAACTCAGC
TTAGACCAACCGCGGAAAGATATTACCGCTCATAGCTGCGAGAAAAAGGT
TGTGTTGGAGTCACCAGATACCGCCGAGCTTCAATATTCCGAGCAAGTCG
ATGACCCTGACCCCATACATAAAGAACAGCCCACAACCAACATGACCACA
TCTCCAGTCAGTGTTCCCGACCATCCACCGTCTTTTGCAGGACCTAACGC
ATTGCAGTCTGGTCCACACCAATCCCAGCAATTGAAGGAACAACATACAG
TGTCCAAGGAGAACAACCGCTCTCCTCAGAATGAAGACCCCACCATCTCT
TCTGTCAAAGCCAACACACGACTTGCGCCACTACAGGACACATCACCTCA
GACCCCGGACCAGCCGGCTCTGAAAGGAGCGGAGAAAAAAGACGCTCTAC
GCTTTCTCTGCAACGACCGTCTGTCTAATCCGTTGGGCATAGTGGATGAA
GAAGCCGATGAAGAAAACGCCGGCGGCAATGGTGCAGTGAGTCACGAATT
AGAAGCTATAGATAGCGATGGTGATGATGATTGCATTGACCATGATGAAG
TCGCTCCGAGTGCAATTGACAGAAATAACCTCGCTCAGTTTCATCGCATG
TGGCAACTAGACAAAGATAAGAACGATCTTGCGGTCGCAGCCGCAGGAGG
TGTGGTGGACGATATTGACGACGCTGTGGACCTCACAGAACTGTTGCACA
AGGAGGAACAAACCGCTAAAGACAACGAAAGTGAACATGATGGCAGCGTA
TTTGGTGCAGCTCCAGTTTCAAATGAAGTTGATGAGACAAAACAACAATC
AGAGCAATACATGGAGCAAATGTAAGTTCTTATTCAAAACAGGAATCCAG
CTCTCACCATTTGATTAGCTTCCCCCTAACATTCGCGTTATCGTTCATTG
CCACTTAACAGGTTTCAACGAGATGATAGCCGTTCAAGAATCATTGACAA
TATCAATGAGGATGCAGAAGATGATCAGAAGCGTGAAAAAGCCCGTGCGT
TATGGAAAGCACGTCAAAAAGCAAAAGCGATTCTTCAACGAGATAACGAC
AGCCTATCAAAGTTTGATTTGTTCGACAGCAACTCAAAATCTCGAAGCGC
CGACTTTCGTCAGAAGCTCGAAAAGACATGTCGTCGCTCTTCACCACATC
TACAATCTAGGAACGAAAACAACAAGCGCAATAACTCCTGGTTGGCGGAA
AGCACCTTGTCCGCTTGGGAGAAACAGCGCAGGTGCATGCAGAGCGTGGC
AGTCAAGAAACGGAAGGGTGTCCCAGTCAGCAATTGGTCTTTCGCTATTC
ATGGAAATCAAGAGAAGACACCAAAGAAGAGTGCGCGAACGCCTACCCCA
AGCTTGGGCGCTCCTTGTGTGAGCAGTCGGAGTAG
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Coding sequence (CDS) from alignment at tig00004384_pilon:1170917..1172751+

>Gchil8290.t1 ID=Gchil8290.t1|Name=Gchil8290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1665bp|location=Sequence derived from alignment at tig00004384_pilon:1170917..1172751+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCTACGTGAACGACTGGCCGCGCTGCGGTCGCGACGCACGTCTAG
CAAGTTGGACATACCATCGCAATTAGTCCTCAACTCCCCCTCCCCAAAAG
GCACCCCCTCCAAGAAAAGTCGTCTACACAGCGAGGCAGCCCGTAGACAG
TGGCATCAACAACAGCTCCACAATGCAGCCAGAAAGGCACGCCAAAATGT
TATGGAAACTGGCCTTTACGATGTGCTCACCAGAGCACCCCCCCCGGAAA
AGGTTGTGCCCCCGCTTGTTAAGGAAGAGAAACAGGCCGATGCTCAACCC
AGTGACTCTGAAGACGAGGATGAAGAAGGAGAGCACGTTGAAATTGACGA
GGAGCAGATGGAAATTTATGAAGAAGAACGTGCTCTGCAGCATGCAAATC
GACAGTTGTTGTTCGATGACCACTCTGTACCGGAAAGTTCTAAACTCAGC
TTAGACCAACCGCGGAAAGATATTACCGCTCATAGCTGCGAGAAAAAGGT
TGTGTTGGAGTCACCAGATACCGCCGAGCTTCAATATTCCGAGCAAGTCG
ATGACCCTGACCCCATACATAAAGAACAGCCCACAACCAACATGACCACA
TCTCCAGTCAGTGTTCCCGACCATCCACCGTCTTTTGCAGGACCTAACGC
ATTGCAGTCTGGTCCACACCAATCCCAGCAATTGAAGGAACAACATACAG
TGTCCAAGGAGAACAACCGCTCTCCTCAGAATGAAGACCCCACCATCTCT
TCTGTCAAAGCCAACACACGACTTGCGCCACTACAGGACACATCACCTCA
GACCCCGGACCAGCCGGCTCTGAAAGGAGCGGAGAAAAAAGACGCTCTAC
GCTTTCTCTGCAACGACCGTCTGTCTAATCCGTTGGGCATAGTGGATGAA
GAAGCCGATGAAGAAAACGCCGGCGGCAATGGTGCAGTGAGTCACGAATT
AGAAGCTATAGATAGCGATGGTGATGATGATTGCATTGACCATGATGAAG
TCGCTCCGAGTGCAATTGACAGAAATAACCTCGCTCAGTTTCATCGCATG
TGGCAACTAGACAAAGATAAGAACGATCTTGCGGTCGCAGCCGCAGGAGG
TGTGGTGGACGATATTGACGACGCTGTGGACCTCACAGAACTGTTGCACA
AGGAGGAACAAACCGCTAAAGACAACGAAAGTGAACATGATGGCAGCGTA
TTTGGTGCAGCTCCAGTTTCAAATGAAGTTGATGAGACAAAACAACAATC
AGAGCAATACATGGAGCAAATGTTTCAACGAGATGATAGCCGTTCAAGAA
TCATTGACAATATCAATGAGGATGCAGAAGATGATCAGAAGCGTGAAAAA
GCCCGTGCGTTATGGAAAGCACGTCAAAAAGCAAAAGCGATTCTTCAACG
AGATAACGACAGCCTATCAAAGTTTGATTTGTTCGACAGCAACTCAAAAT
CTCGAAGCGCCGACTTTCGTCAGAAGCTCGAAAAGACATGTCGTCGCTCT
TCACCACATCTACAATCTAGGAACGAAAACAACAAGCGCAATAACTCCTG
GTTGGCGGAAAGCACCTTGTCCGCTTGGGAGAAACAGCGCAGAGAAGACA
CCAAAGAAGAGTGCGCGAACGCCTACCCCAAGCTTGGGCGCTCCTTGTGT
GAGCAGTCGGAGTAG
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