Gchil8254.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8254.t2
Unique NameGchil8254.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length625
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:903867..905818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_001414-tr
PFAMsRVT_1,SCAN,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl33208|Metazoa
Evalue9.68e-125
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria
DescriptionK02A2.6-like
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8254Gchil8254Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 903867..906922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8254.t2Gchil8254.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 903867..905818 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8254.t2.stop1Gchil8254.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 903867..903869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8254.t2.CDS1Gchil8254.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 903867..903887 -
Gchil8254.t2.CDS2Gchil8254.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 903965..905818 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8254.t2.exon1Gchil8254.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 903867..903887 -
Gchil8254.t2.exon2Gchil8254.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 903965..905818 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8254.t2.intron1Gchil8254.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 903888..903964 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8254.t2.start1Gchil8254.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 905816..905818 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8254.t2 ID=Gchil8254.t2|Name=Gchil8254.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=625bp
MLRAGVIEPVQWPWASPVVLAPKPDGSWRFCIDYRRLNDVTVKDVYLIRR
MDEYIDSLGTATVFTALDANWVYWQVPVREEDQDKTAFVCHSGLYRFKWM
PFGLTNAPATFQRAINILLARFKWRTCLVYLDDIIVFSDNLDDHLTQVRD
IMTTLREAGITLKLRKCVFFTDTVKYLGHIIRPGRLMIEEARVRSLRKTK
EPATQTELRSFLGLVNVYRRFIPNSADIAAPLNALLRKGQPPKLDPFTSA
QTDVFNSLREAITSAPILSLPKPRLPFSVDTDSSDYQVGCALFQTTLEGE
SKPIGYWSRSLNVHERNYSVSEKECLAVVWALSTLRPYLMGVHFTVYTDH
SSLRWLMTISEPSGRLMRWRLRLAEYDFEVIYKKGTQNAQADALSRLPTN
GEALAVDDEDIPCFVVDDGTPGNPDWLHDKWNESPESDDDIDALLVSDDS
KKPPPGDFVPIPPEEMVREQQGDPFCTKIRAWLNGVAQLPFEVNDLGYVV
RTVQSSPQVMVPHTLQSSVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAM
AVDCYATVRFCTECAKNRVKLRKYSTKLKLFPARAPLEFVAIDTLGEFLT
TRRGHKFLIVITDRFSKLGIGGFW*
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spliced messenger RNA

>Gchil8254.t2 ID=Gchil8254.t2|Name=Gchil8254.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1875bp|location=Sequence derived from alignment at tig00004384_pilon:903867..905818- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCGAGCTGGAGTGATCGAACCGGTTCAGTGGCCGTGGGCATCCCC
AGTGGTACTGGCTCCGAAACCCGATGGGTCCTGGCGCTTTTGCATCGACT
ACCGTCGCTTGAATGATGTTACCGTCAAGGACGTGTATCTGATCCGACGA
ATGGATGAGTACATCGACTCTCTCGGCACTGCTACCGTGTTCACGGCTTT
GGACGCCAATTGGGTATATTGGCAGGTTCCCGTTAGGGAGGAGGACCAAG
ATAAGACTGCGTTTGTCTGTCACTCGGGACTCTACCGTTTCAAATGGATG
CCTTTTGGTCTAACCAATGCTCCCGCTACCTTTCAGCGTGCTATCAACAT
TTTGTTGGCCCGCTTTAAGTGGCGTACTTGCCTCGTCTATTTGGACGATA
TCATTGTATTCTCAGACAATCTGGATGACCATCTCACCCAAGTCAGGGAC
ATAATGACCACGCTACGTGAAGCTGGAATAACCCTCAAACTGAGGAAATG
TGTGTTCTTTACCGATACTGTGAAGTATCTCGGGCACATTATCCGTCCTG
GACGTTTAATGATCGAGGAAGCTCGAGTGAGGTCCCTTCGCAAGACGAAA
GAACCCGCTACCCAGACGGAACTGCGCTCCTTTCTAGGATTGGTCAACGT
CTACCGACGGTTTATCCCTAACTCCGCTGACATCGCGGCCCCCTTGAACG
CGCTTCTGCGGAAAGGTCAACCACCTAAACTGGACCCCTTTACGTCCGCC
CAGACGGATGTTTTTAACTCCCTTAGGGAGGCTATCACATCAGCACCGAT
TTTATCGTTACCGAAACCCAGACTACCGTTTTCCGTGGACACGGACTCTA
GCGACTACCAGGTAGGCTGTGCGCTCTTTCAAACTACTCTCGAAGGAGAA
AGCAAACCCATTGGGTACTGGTCACGCTCGCTCAATGTCCACGAGCGGAA
CTACTCCGTGTCGGAGAAGGAGTGCCTCGCAGTTGTGTGGGCCCTCTCTA
CACTCCGCCCCTACCTCATGGGTGTGCACTTTACCGTTTACACGGATCAC
TCGTCCCTACGATGGCTCATGACCATCTCGGAGCCGTCAGGCCGCTTAAT
GCGTTGGAGACTCCGCCTCGCGGAATATGACTTTGAAGTGATCTACAAGA
AGGGCACTCAGAACGCGCAAGCGGACGCGCTCTCGCGTTTACCCACGAAT
GGGGAAGCTCTAGCCGTCGATGACGAGGATATACCTTGCTTCGTCGTAGA
CGATGGAACACCGGGAAACCCGGATTGGTTACACGATAAATGGAACGAAA
GCCCGGAATCAGACGATGATATTGACGCATTGCTCGTCTCGGACGATTCA
AAGAAACCCCCGCCGGGTGATTTTGTGCCGATACCCCCGGAGGAGATGGT
CAGAGAACAGCAGGGTGACCCCTTCTGTACGAAGATTCGCGCCTGGCTTA
ATGGCGTTGCACAACTCCCTTTCGAGGTGAACGATCTTGGATACGTCGTC
AGGACGGTTCAGTCATCCCCACAAGTCATGGTGCCGCATACTTTACAGTC
TAGTGTTTTGCATCTATCGCACTATGCGAAACTTGGTGGACACGCCGGTG
GACGGAAGCTCTACCTCACTTTGCGAAGGAATTTCTACTGGCCCGCCATG
GCGGTGGATTGCTACGCAACGGTGCGGTTTTGTACCGAATGTGCTAAGAA
TCGGGTGAAACTTCGCAAGTACTCAACGAAGTTGAAACTATTCCCGGCAC
GGGCTCCTCTCGAGTTTGTCGCCATTGACACCCTCGGCGAGTTCCTCACC
ACACGACGTGGGCATAAGTTTTTGATCGTTATCACGGATCGTTTCTCAAA
ACTGGGTATTGGAGGATTCTGGTGA
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protein sequence of Gchil8254.t2

>Gchil8254.t2 ID=Gchil8254.t2|Name=Gchil8254.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=625bp
MLRAGVIEPVQWPWASPVVLAPKPDGSWRFCIDYRRLNDVTVKDVYLIRR
MDEYIDSLGTATVFTALDANWVYWQVPVREEDQDKTAFVCHSGLYRFKWM
PFGLTNAPATFQRAINILLARFKWRTCLVYLDDIIVFSDNLDDHLTQVRD
IMTTLREAGITLKLRKCVFFTDTVKYLGHIIRPGRLMIEEARVRSLRKTK
EPATQTELRSFLGLVNVYRRFIPNSADIAAPLNALLRKGQPPKLDPFTSA
QTDVFNSLREAITSAPILSLPKPRLPFSVDTDSSDYQVGCALFQTTLEGE
SKPIGYWSRSLNVHERNYSVSEKECLAVVWALSTLRPYLMGVHFTVYTDH
SSLRWLMTISEPSGRLMRWRLRLAEYDFEVIYKKGTQNAQADALSRLPTN
GEALAVDDEDIPCFVVDDGTPGNPDWLHDKWNESPESDDDIDALLVSDDS
KKPPPGDFVPIPPEEMVREQQGDPFCTKIRAWLNGVAQLPFEVNDLGYVV
RTVQSSPQVMVPHTLQSSVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAM
AVDCYATVRFCTECAKNRVKLRKYSTKLKLFPARAPLEFVAIDTLGEFLT
TRRGHKFLIVITDRFSKLGIGGFW*
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mRNA from alignment at tig00004384_pilon:903867..905818-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8254.t2 ID=Gchil8254.t2|Name=Gchil8254.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1952bp|location=Sequence derived from alignment at tig00004384_pilon:903867..905818- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCCGAGCTGGAGTGATCGAACCGGTTCAGTGGCCGTGGGCATCCCC
AGTGGTACTGGCTCCGAAACCCGATGGGTCCTGGCGCTTTTGCATCGACT
ACCGTCGCTTGAATGATGTTACCGTCAAGGACGTGTATCTGATCCGACGA
ATGGATGAGTACATCGACTCTCTCGGCACTGCTACCGTGTTCACGGCTTT
GGACGCCAATTGGGTATATTGGCAGGTTCCCGTTAGGGAGGAGGACCAAG
ATAAGACTGCGTTTGTCTGTCACTCGGGACTCTACCGTTTCAAATGGATG
CCTTTTGGTCTAACCAATGCTCCCGCTACCTTTCAGCGTGCTATCAACAT
TTTGTTGGCCCGCTTTAAGTGGCGTACTTGCCTCGTCTATTTGGACGATA
TCATTGTATTCTCAGACAATCTGGATGACCATCTCACCCAAGTCAGGGAC
ATAATGACCACGCTACGTGAAGCTGGAATAACCCTCAAACTGAGGAAATG
TGTGTTCTTTACCGATACTGTGAAGTATCTCGGGCACATTATCCGTCCTG
GACGTTTAATGATCGAGGAAGCTCGAGTGAGGTCCCTTCGCAAGACGAAA
GAACCCGCTACCCAGACGGAACTGCGCTCCTTTCTAGGATTGGTCAACGT
CTACCGACGGTTTATCCCTAACTCCGCTGACATCGCGGCCCCCTTGAACG
CGCTTCTGCGGAAAGGTCAACCACCTAAACTGGACCCCTTTACGTCCGCC
CAGACGGATGTTTTTAACTCCCTTAGGGAGGCTATCACATCAGCACCGAT
TTTATCGTTACCGAAACCCAGACTACCGTTTTCCGTGGACACGGACTCTA
GCGACTACCAGGTAGGCTGTGCGCTCTTTCAAACTACTCTCGAAGGAGAA
AGCAAACCCATTGGGTACTGGTCACGCTCGCTCAATGTCCACGAGCGGAA
CTACTCCGTGTCGGAGAAGGAGTGCCTCGCAGTTGTGTGGGCCCTCTCTA
CACTCCGCCCCTACCTCATGGGTGTGCACTTTACCGTTTACACGGATCAC
TCGTCCCTACGATGGCTCATGACCATCTCGGAGCCGTCAGGCCGCTTAAT
GCGTTGGAGACTCCGCCTCGCGGAATATGACTTTGAAGTGATCTACAAGA
AGGGCACTCAGAACGCGCAAGCGGACGCGCTCTCGCGTTTACCCACGAAT
GGGGAAGCTCTAGCCGTCGATGACGAGGATATACCTTGCTTCGTCGTAGA
CGATGGAACACCGGGAAACCCGGATTGGTTACACGATAAATGGAACGAAA
GCCCGGAATCAGACGATGATATTGACGCATTGCTCGTCTCGGACGATTCA
AAGAAACCCCCGCCGGGTGATTTTGTGCCGATACCCCCGGAGGAGATGGT
CAGAGAACAGCAGGGTGACCCCTTCTGTACGAAGATTCGCGCCTGGCTTA
ATGGCGTTGCACAACTCCCTTTCGAGGTGAACGATCTTGGATACGTCGTC
AGGACGGTTCAGTCATCCCCACAAGTCATGGTGCCGCATACTTTACAGTC
TAGTGTTTTGCATCTATCGCACTATGCGAAACTTGGTGGACACGCCGGTG
GACGGAAGCTCTACCTCACTTTGCGAAGGAATTTCTACTGGCCCGCCATG
GCGGTGGATTGCTACGCAACGGTGCGGTTTTGTACCGAATGTGCTAAGAA
TCGGGTGAAACTTCGCAAGTACTCAACGAAGTTGAAACTATTCCCGGCAC
GGGCTCCTCTCGAGTTTGTCGCCATTGACACCCTCGGCGAGTTCCTCACC
ACACGACGTGGGCATAAGTTTTTGATCGTTATCACGGATCGTTTCTCAAA
ACTGGTTCGGACCGTACCTTTACGGAAGATATCCGCTTTCACGGTTGCAC
AAGCATTTGTAACCCATTATTGTGGTGGTAGGGTATTGGAGGATTCTGGT
GA
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Coding sequence (CDS) from alignment at tig00004384_pilon:903867..905818-

>Gchil8254.t2 ID=Gchil8254.t2|Name=Gchil8254.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1875bp|location=Sequence derived from alignment at tig00004384_pilon:903867..905818- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCCGAGCTGGAGTGATCGAACCGGTTCAGTGGCCGTGGGCATCCCC
AGTGGTACTGGCTCCGAAACCCGATGGGTCCTGGCGCTTTTGCATCGACT
ACCGTCGCTTGAATGATGTTACCGTCAAGGACGTGTATCTGATCCGACGA
ATGGATGAGTACATCGACTCTCTCGGCACTGCTACCGTGTTCACGGCTTT
GGACGCCAATTGGGTATATTGGCAGGTTCCCGTTAGGGAGGAGGACCAAG
ATAAGACTGCGTTTGTCTGTCACTCGGGACTCTACCGTTTCAAATGGATG
CCTTTTGGTCTAACCAATGCTCCCGCTACCTTTCAGCGTGCTATCAACAT
TTTGTTGGCCCGCTTTAAGTGGCGTACTTGCCTCGTCTATTTGGACGATA
TCATTGTATTCTCAGACAATCTGGATGACCATCTCACCCAAGTCAGGGAC
ATAATGACCACGCTACGTGAAGCTGGAATAACCCTCAAACTGAGGAAATG
TGTGTTCTTTACCGATACTGTGAAGTATCTCGGGCACATTATCCGTCCTG
GACGTTTAATGATCGAGGAAGCTCGAGTGAGGTCCCTTCGCAAGACGAAA
GAACCCGCTACCCAGACGGAACTGCGCTCCTTTCTAGGATTGGTCAACGT
CTACCGACGGTTTATCCCTAACTCCGCTGACATCGCGGCCCCCTTGAACG
CGCTTCTGCGGAAAGGTCAACCACCTAAACTGGACCCCTTTACGTCCGCC
CAGACGGATGTTTTTAACTCCCTTAGGGAGGCTATCACATCAGCACCGAT
TTTATCGTTACCGAAACCCAGACTACCGTTTTCCGTGGACACGGACTCTA
GCGACTACCAGGTAGGCTGTGCGCTCTTTCAAACTACTCTCGAAGGAGAA
AGCAAACCCATTGGGTACTGGTCACGCTCGCTCAATGTCCACGAGCGGAA
CTACTCCGTGTCGGAGAAGGAGTGCCTCGCAGTTGTGTGGGCCCTCTCTA
CACTCCGCCCCTACCTCATGGGTGTGCACTTTACCGTTTACACGGATCAC
TCGTCCCTACGATGGCTCATGACCATCTCGGAGCCGTCAGGCCGCTTAAT
GCGTTGGAGACTCCGCCTCGCGGAATATGACTTTGAAGTGATCTACAAGA
AGGGCACTCAGAACGCGCAAGCGGACGCGCTCTCGCGTTTACCCACGAAT
GGGGAAGCTCTAGCCGTCGATGACGAGGATATACCTTGCTTCGTCGTAGA
CGATGGAACACCGGGAAACCCGGATTGGTTACACGATAAATGGAACGAAA
GCCCGGAATCAGACGATGATATTGACGCATTGCTCGTCTCGGACGATTCA
AAGAAACCCCCGCCGGGTGATTTTGTGCCGATACCCCCGGAGGAGATGGT
CAGAGAACAGCAGGGTGACCCCTTCTGTACGAAGATTCGCGCCTGGCTTA
ATGGCGTTGCACAACTCCCTTTCGAGGTGAACGATCTTGGATACGTCGTC
AGGACGGTTCAGTCATCCCCACAAGTCATGGTGCCGCATACTTTACAGTC
TAGTGTTTTGCATCTATCGCACTATGCGAAACTTGGTGGACACGCCGGTG
GACGGAAGCTCTACCTCACTTTGCGAAGGAATTTCTACTGGCCCGCCATG
GCGGTGGATTGCTACGCAACGGTGCGGTTTTGTACCGAATGTGCTAAGAA
TCGGGTGAAACTTCGCAAGTACTCAACGAAGTTGAAACTATTCCCGGCAC
GGGCTCCTCTCGAGTTTGTCGCCATTGACACCCTCGGCGAGTTCCTCACC
ACACGACGTGGGCATAAGTTTTTGATCGTTATCACGGATCGTTTCTCAAA
ACTGGGTATTGGAGGATTCTGGTGA
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