Gchil8209.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8209.t1
Unique NameGchil8209.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length374
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:690306..691427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN264CT
PFAMsAIRS,AIRS_C
Max annot lvl2759|Eukaryota
KEGG rclassRC01100
KEGG koko:K01933
KEGG ReactionR04208
KEGG Pathwayko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG ModuleM00048
Evalue9.74e-138
EggNOG OGsCOG0151@1|root,KOG0237@2759|Eukaryota
EC6.3.3.1
Descriptionphosphoribosylamine-glycine ligase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8209Gchil8209Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 690306..691427 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8209.t1.stop1Gchil8209.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 690306..690308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8209.t1.CDS1Gchil8209.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 690306..691427 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8209.t1.exon1Gchil8209.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 690306..691427 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8209.t1.start1Gchil8209.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 691425..691427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8209.t1Gchil8209.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 690306..691427 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8209.t1 ID=Gchil8209.t1|Name=Gchil8209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=374bp
MTANESLTYASSGVDIDSESASIKSLISSLGPIAHRKPGTPGAPVAHSGG
FSGLIEFGDNLLALCTDGVGSKLLLAAEIGVYDTVAIDCMAMNVNDLLCI
GAEPLAFVDYIAAPRPSKETWAALGRGLGEACRRARVSLCGGETASLPDM
VREIDVSGTALGWLPKGKQLEGKVKSGDKIIGLPSSGIHSNGFSLVRKVL
TKSGASVSDAAPFDIGKRADGLWRHSEGDVVTLGEVLLNPTKIYVDPVSD
LLEDCRKGSGPCAYEDIHGIAHITGGGLSNLLRLGADVGFVIDDALPVLP
EFQWVQQNGEISEFEMWRTFNMGMGMAIMVSAESCEAVSSWLQERLEGCR
PVGFVDCERRVVHGTNGVLFEEY*
back to top

spliced messenger RNA

>Gchil8209.t1 ID=Gchil8209.t1|Name=Gchil8209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00004384_pilon:690306..691427- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCGAATGAGTCGTTGACGTATGCATCGTCGGGGGTTGATATCGA
TTCCGAGTCGGCTAGCATCAAGTCTCTAATCTCATCCCTTGGTCCAATAG
CTCACCGCAAGCCCGGCACTCCCGGTGCTCCCGTTGCTCATTCAGGAGGG
TTCTCCGGACTGATTGAGTTTGGGGACAACCTCCTCGCACTCTGCACGGA
TGGGGTGGGAAGCAAGCTTTTACTCGCGGCCGAGATTGGTGTATACGACA
CGGTTGCCATAGACTGCATGGCAATGAATGTGAATGATTTACTGTGCATT
GGTGCGGAGCCATTGGCTTTTGTAGATTACATTGCGGCACCGCGACCGAG
CAAGGAAACGTGGGCTGCTCTGGGTCGAGGTTTAGGGGAGGCTTGCCGCC
GAGCTCGTGTGAGCCTTTGTGGTGGAGAGACGGCCAGTCTTCCCGACATG
GTTCGTGAAATAGACGTTAGCGGGACTGCGTTGGGCTGGTTGCCGAAAGG
AAAACAGCTGGAAGGTAAAGTAAAAAGTGGCGACAAGATCATCGGGCTTC
CATCGTCTGGCATTCATTCCAACGGGTTCTCACTCGTGAGAAAAGTGTTG
ACGAAGAGCGGCGCGTCTGTGTCAGATGCCGCTCCGTTTGACATTGGAAA
GCGCGCGGACGGTTTATGGCGTCATAGCGAGGGGGATGTCGTGACTCTGG
GCGAGGTGCTGCTGAATCCGACTAAAATCTACGTTGATCCAGTATCGGAT
CTGCTCGAGGATTGTCGGAAAGGAAGTGGGCCGTGCGCATATGAGGACAT
TCATGGCATTGCTCACATTACCGGTGGCGGTCTATCTAACCTCCTCCGTC
TGGGAGCTGACGTTGGATTCGTGATCGACGACGCTCTGCCTGTGTTGCCA
GAGTTCCAATGGGTGCAGCAAAACGGGGAGATTTCGGAGTTTGAAATGTG
GCGAACATTCAACATGGGGATGGGAATGGCGATCATGGTGTCAGCGGAAT
CGTGCGAGGCGGTTTCCAGCTGGCTGCAAGAACGGTTGGAAGGTTGCAGG
CCGGTAGGGTTTGTAGACTGTGAACGCAGAGTGGTGCATGGTACGAATGG
TGTATTGTTTGAAGAGTACTAG
back to top

protein sequence of Gchil8209.t1

>Gchil8209.t1 ID=Gchil8209.t1|Name=Gchil8209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=374bp
MTANESLTYASSGVDIDSESASIKSLISSLGPIAHRKPGTPGAPVAHSGG
FSGLIEFGDNLLALCTDGVGSKLLLAAEIGVYDTVAIDCMAMNVNDLLCI
GAEPLAFVDYIAAPRPSKETWAALGRGLGEACRRARVSLCGGETASLPDM
VREIDVSGTALGWLPKGKQLEGKVKSGDKIIGLPSSGIHSNGFSLVRKVL
TKSGASVSDAAPFDIGKRADGLWRHSEGDVVTLGEVLLNPTKIYVDPVSD
LLEDCRKGSGPCAYEDIHGIAHITGGGLSNLLRLGADVGFVIDDALPVLP
EFQWVQQNGEISEFEMWRTFNMGMGMAIMVSAESCEAVSSWLQERLEGCR
PVGFVDCERRVVHGTNGVLFEEY*
back to top

mRNA from alignment at tig00004384_pilon:690306..691427-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8209.t1 ID=Gchil8209.t1|Name=Gchil8209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00004384_pilon:690306..691427- (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCGAATGAGTCGTTGACGTATGCATCGTCGGGGGTTGATATCGA
TTCCGAGTCGGCTAGCATCAAGTCTCTAATCTCATCCCTTGGTCCAATAG
CTCACCGCAAGCCCGGCACTCCCGGTGCTCCCGTTGCTCATTCAGGAGGG
TTCTCCGGACTGATTGAGTTTGGGGACAACCTCCTCGCACTCTGCACGGA
TGGGGTGGGAAGCAAGCTTTTACTCGCGGCCGAGATTGGTGTATACGACA
CGGTTGCCATAGACTGCATGGCAATGAATGTGAATGATTTACTGTGCATT
GGTGCGGAGCCATTGGCTTTTGTAGATTACATTGCGGCACCGCGACCGAG
CAAGGAAACGTGGGCTGCTCTGGGTCGAGGTTTAGGGGAGGCTTGCCGCC
GAGCTCGTGTGAGCCTTTGTGGTGGAGAGACGGCCAGTCTTCCCGACATG
GTTCGTGAAATAGACGTTAGCGGGACTGCGTTGGGCTGGTTGCCGAAAGG
AAAACAGCTGGAAGGTAAAGTAAAAAGTGGCGACAAGATCATCGGGCTTC
CATCGTCTGGCATTCATTCCAACGGGTTCTCACTCGTGAGAAAAGTGTTG
ACGAAGAGCGGCGCGTCTGTGTCAGATGCCGCTCCGTTTGACATTGGAAA
GCGCGCGGACGGTTTATGGCGTCATAGCGAGGGGGATGTCGTGACTCTGG
GCGAGGTGCTGCTGAATCCGACTAAAATCTACGTTGATCCAGTATCGGAT
CTGCTCGAGGATTGTCGGAAAGGAAGTGGGCCGTGCGCATATGAGGACAT
TCATGGCATTGCTCACATTACCGGTGGCGGTCTATCTAACCTCCTCCGTC
TGGGAGCTGACGTTGGATTCGTGATCGACGACGCTCTGCCTGTGTTGCCA
GAGTTCCAATGGGTGCAGCAAAACGGGGAGATTTCGGAGTTTGAAATGTG
GCGAACATTCAACATGGGGATGGGAATGGCGATCATGGTGTCAGCGGAAT
CGTGCGAGGCGGTTTCCAGCTGGCTGCAAGAACGGTTGGAAGGTTGCAGG
CCGGTAGGGTTTGTAGACTGTGAACGCAGAGTGGTGCATGGTACGAATGG
TGTATTGTTTGAAGAGTACTAG
back to top

Coding sequence (CDS) from alignment at tig00004384_pilon:690306..691427-

>Gchil8209.t1 ID=Gchil8209.t1|Name=Gchil8209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1122bp|location=Sequence derived from alignment at tig00004384_pilon:690306..691427- (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCGAATGAGTCGTTGACGTATGCATCGTCGGGGGTTGATATCGA
TTCCGAGTCGGCTAGCATCAAGTCTCTAATCTCATCCCTTGGTCCAATAG
CTCACCGCAAGCCCGGCACTCCCGGTGCTCCCGTTGCTCATTCAGGAGGG
TTCTCCGGACTGATTGAGTTTGGGGACAACCTCCTCGCACTCTGCACGGA
TGGGGTGGGAAGCAAGCTTTTACTCGCGGCCGAGATTGGTGTATACGACA
CGGTTGCCATAGACTGCATGGCAATGAATGTGAATGATTTACTGTGCATT
GGTGCGGAGCCATTGGCTTTTGTAGATTACATTGCGGCACCGCGACCGAG
CAAGGAAACGTGGGCTGCTCTGGGTCGAGGTTTAGGGGAGGCTTGCCGCC
GAGCTCGTGTGAGCCTTTGTGGTGGAGAGACGGCCAGTCTTCCCGACATG
GTTCGTGAAATAGACGTTAGCGGGACTGCGTTGGGCTGGTTGCCGAAAGG
AAAACAGCTGGAAGGTAAAGTAAAAAGTGGCGACAAGATCATCGGGCTTC
CATCGTCTGGCATTCATTCCAACGGGTTCTCACTCGTGAGAAAAGTGTTG
ACGAAGAGCGGCGCGTCTGTGTCAGATGCCGCTCCGTTTGACATTGGAAA
GCGCGCGGACGGTTTATGGCGTCATAGCGAGGGGGATGTCGTGACTCTGG
GCGAGGTGCTGCTGAATCCGACTAAAATCTACGTTGATCCAGTATCGGAT
CTGCTCGAGGATTGTCGGAAAGGAAGTGGGCCGTGCGCATATGAGGACAT
TCATGGCATTGCTCACATTACCGGTGGCGGTCTATCTAACCTCCTCCGTC
TGGGAGCTGACGTTGGATTCGTGATCGACGACGCTCTGCCTGTGTTGCCA
GAGTTCCAATGGGTGCAGCAAAACGGGGAGATTTCGGAGTTTGAAATGTG
GCGAACATTCAACATGGGGATGGGAATGGCGATCATGGTGTCAGCGGAAT
CGTGCGAGGCGGTTTCCAGCTGGCTGCAAGAACGGTTGGAAGGTTGCAGG
CCGGTAGGGTTTGTAGACTGTGAACGCAGAGTGGTGCATGGTACGAATGG
TGTATTGTTTGAAGAGTACTAG
back to top