Gchil8223.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8223.t1
Unique NameGchil8223.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length231
Homology
BLAST of Gchil8223.t1 vs. uniprot
Match: A0A2V3IQ15_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ15_9FLOR)

HSP 1 Score: 309 bits (791), Expect = 4.720e-104
Identity = 141/222 (63.51%), Postives = 182/222 (81.98%), Query Frame = 0
Query:    8 TRARSRKNLSTSWSKAIGSAAPFLGVIALLCVTGIYYNAIRSHNVELSFDQLSAFERQLTTIGNRSIYFRDALRADDMLNTLQRHEWAKVASNVDFVAFVYDEMYRL-MSEAWLQQVDKVLKESKVEGYGIVLFSCGCIIPNLIFMETEMRFDGYECMMLPGFVMSHDFVHFRDIPVRRKRCRKRDAVMKANWYEDNGWKVEEARREHEELRMKIMMQNGAY 228
            +R RSRKNLS+S SK I +AAP L ++ ++ VT +YY AIRSH+VELSFDQLSAFERQ+TT+GNRSIY      A DM+ +L R+EW KVAS +DFVAFVYDE+YR+ ++ AW++ V  +L+ESK  GYG+VLFSCGCIIPN++F  TE+RF GYECMMLPGFVMSH+FVHF ++  +R  CRKR+ + K+NWYE+N +K+EEARREHEELR+K+M++NG Y
Sbjct:    5 SRTRSRKNLSSSLSKRIANAAPVLSLVTVIVVTAVYYTAIRSHDVELSFDQLSAFERQVTTLGNRSIYVCSGGNAKDMIYSLHRYEWEKVASKIDFVAFVYDEVYRMRLNSAWVEAVAGLLRESKPNGYGVVLFSCGCIIPNVVFQRTEVRFGGYECMMLPGFVMSHEFVHFEELAAQRTPCRKRERITKSNWYEENSFKIEEARREHEELRVKLMIENGEY 226          
BLAST of Gchil8223.t1 vs. uniprot
Match: A0A7S3A224_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A224_9RHOD)

HSP 1 Score: 148 bits (374), Expect = 1.970e-40
Identity = 70/185 (37.84%), Postives = 114/185 (61.62%), Query Frame = 0
Query:   33 VIALLCVTGIYYNAIRSHNVELSFDQLSAFERQLTTIGNRSIYFRDALRADDMLNTLQRHEWAKVASNVDFVAFVYDEMYRLMSEAWLQQVDKVLKESKVEGYGIVLFSCGCIIPNLIFMETEMRFDGYECMMLPGFVMSHDFVHFRDIPVRRKRCRKRDAVMKANWYEDNGWKVEEARREHEEL 217
            +I +L VT ++++ IR+  VEL+ +QL+  ER+++   N SIY  D  +++ +L+     EWA+ A +VD+VAFVYD+++  M++ W+  V + L +S   G+GI LFSCGCI+P++ F     RFDG ECM LP FV   DF+ +   P+    C KR+ +++ +  E    ++E A+    EL
Sbjct:   53 IIVVLVVTAVFFSGIRNTGVELTIEQLAELERRVSVFHNTSIYAYDVNKSEGLLSMFTPAEWAETAKDVDYVAFVYDDVFEAMNQRWIGHVHRALAKSIFPGFGIALFSCGCIVPSIYFEYASPRFDGAECMALPAFVFDSDFIFWIKEPLGVP-CHKREGLLETSVLEHYEAELETAKENFAEL 236          
BLAST of Gchil8223.t1 vs. uniprot
Match: A0A7S0ZIE2_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZIE2_9RHOD)

HSP 1 Score: 114 bits (286), Expect = 1.990e-27
Identity = 67/217 (30.88%), Postives = 119/217 (54.84%), Query Frame = 0
Query:   25 GSAAPFLGVIALLCVTGIYYNAIRSHNVELSFDQLSAFERQLTTIGNRS-----------IYFRDA-LRADDMLNTLQRHEWAKVASNVDFVAFVYDEMYRLMSEAWLQQVDKVLKESKVEGYGIVLFSCGCIIPNLIFMETEMRFDGYECMMLPGFVMSHDFVHFR---DIPVRRKRCRK--RDAV--MKANWYEDNGWKVEEARREHEELRMKIM 222
            G   PFL +++ L +T ++  A++  +VEL+F+QL+ FE++  T  + +           IY  D  + ++ +  +L   EWA V+  + +V  +Y+ + ++  +AW+      L+ +      IVLF CGC + NL+FM    RF+G EC++LPGFV+  ++V FR   ++ +    C +  R+ V  +K + Y D    +E AR E+EE R K++
Sbjct:   39 GYDVPFLLLLSTLFLTALFLIALQHKDVELTFEQLTDFEKRTYTHYSNTPASLNSTTPTLIYVIDRPIHSESLFKSLAVEEWAIVSKEIQYVTILYESVMKMSGDAWVNAGRHGLRNTSAPNLSIVLFECGCFVSNLLFMNVGTRFNGNECVVLPGFVIPDEYVVFRSRVEMGMEGMECEEEVRNIVESVKLDEYADL---IESARVEYEEFRKKLI 252          
BLAST of Gchil8223.t1 vs. uniprot
Match: A0A7S1XF64_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XF64_9RHOD)

HSP 1 Score: 108 bits (271), Expect = 3.670e-25
Identity = 57/157 (36.31%), Postives = 92/157 (58.60%), Query Frame = 0
Query:   24 IGSAAPFLGVIALLCVTGIYYNAIRSHNVELSFDQLSAFERQLTTIGNRSIYF--RDALRADDMLNTLQRHEWAKVASNVDFVAFVYDEMYRLMSEAW--LQQVDKVLKESKVEGYGIVLFSCGCIIPNLIFMETEMRFDGYECMMLPGFVMSHDFV 176
            IG  +P L ++++L +TGI++ AIR   VELSF+QL+ +E+ + T    SIY    DA   + +L ++ R +WA+++ +VDFV  +    +R  +E+   + +   VL   ++   GIVL  CGC++PN  F    +R+ G EC MLPG V   + V
Sbjct:   34 IGIESPLLALVSVLALTGIFFVAIRRGGVELSFEQLAEYEKNVETYRGGSIYVVELDANSEETVLFSVAREDWARISQSVDFVVLIASS-FRANAESGEVIMKAIDVLTGPELSNLGIVLVPCGCVVPNEFFRHVSVRWGGAECDMLPGLVFEEENV 189          
BLAST of Gchil8223.t1 vs. uniprot
Match: A0A7S0BRF4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BRF4_9RHOD)

HSP 1 Score: 67.0 bits (162), Expect = 9.270e-11
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 0
Query:  134 GYGIVLFSCGCIIPNLIFMETEMRFDGYECMMLPGFVMSHDFVHF--RDIPVRRKRCRKRDAVMKANWYEDNGWKVEEARREHEEL 217
            G+G  LFSCGCIIP++ F     RFDG EC+ LPGFV   DF+ +   D+ V    C KR+ +++ +       ++E A+    EL
Sbjct:    1 GFGTALFSCGCIIPSIYFAYASPRFDGAECIALPGFVFGSDFIFWIKEDLAVP---CPKREDLLETSVLARYETELETAKENFAEL 83          
The following BLAST results are available for this feature:
BLAST of Gchil8223.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IQ15_9FLOR4.720e-10463.51Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S3A224_9RHOD1.970e-4037.84Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0ZIE2_9RHOD1.990e-2730.88Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S1XF64_9RHOD3.670e-2536.31Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7S0BRF4_9RHOD9.270e-1139.53Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 207..227
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 152..230
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 134..151
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..44
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 45..133
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:731238..731930 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8223.t1Gchil8223.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 731238..731930 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8223.t1 ID=Gchil8223.t1|Name=Gchil8223.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=231bp
MQNNKNFTRARSRKNLSTSWSKAIGSAAPFLGVIALLCVTGIYYNAIRSH
NVELSFDQLSAFERQLTTIGNRSIYFRDALRADDMLNTLQRHEWAKVASN
VDFVAFVYDEMYRLMSEAWLQQVDKVLKESKVEGYGIVLFSCGCIIPNLI
FMETEMRFDGYECMMLPGFVMSHDFVHFRDIPVRRKRCRKRDAVMKANWY
EDNGWKVEEARREHEELRMKIMMQNGAYEA*
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