Gchil8217.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8217.t1
Unique NameGchil8217.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:708405..709202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP04522
PFAMsDUF179
Max annot lvl3041|Chlorophyta
KEGG koko:K07735
Evalue9.09e-29
EggNOG OGsCOG1678@1|root,2QRDU@2759|Eukaryota,37R3S@33090|Viridiplantae,34KT0@3041|Chlorophyta
DescriptionUncharacterized ACR, COG1678
COG categoryK
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8217Gchil8217Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 708405..709202 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8217.t1.stop1Gchil8217.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 708405..708407 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8217.t1.CDS1Gchil8217.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 708405..709202 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8217.t1.exon1Gchil8217.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 708405..709202 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8217.t1.start1Gchil8217.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 709200..709202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8217.t1Gchil8217.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 708405..709202 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8217.t1 ID=Gchil8217.t1|Name=Gchil8217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=266bp
MAFVSPVPLRLGRPRGCVRRVRSASSRCVSASAAADDAPSLSETLCTTDW
RAFRAQLAVNQRLRCQPPPHHAALATAAVAAAHWAHTQPHVERGAVLLAA
PDHHWQPAFAHLKRSVILLTDVSAGDVRGLLLNRRTRYSVRQQRSVLARV
GACFGDNALYLGGDCSTGSLEMLHAQPPTLCAGAAEVVPGVYRGGFNASR
GLVAAGTLPPHAFRFLVAYSQWTRATLRAELQRGAWIIVSCSPSLLLHAH
TPTLWRTIMRLISSS*
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spliced messenger RNA

>Gchil8217.t1 ID=Gchil8217.t1|Name=Gchil8217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00004384_pilon:708405..709202- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTTGTGTCGCCTGTGCCGTTGCGCCTTGGCAGGCCGCGAGGTTG
CGTGCGTCGTGTGCGGAGCGCTTCGTCGCGGTGCGTCTCGGCTTCGGCCG
CCGCGGACGACGCGCCGTCCTTGTCGGAGACGCTTTGTACCACCGACTGG
CGCGCCTTTCGCGCGCAGCTTGCCGTGAATCAACGGCTGCGATGCCAGCC
GCCGCCGCACCACGCGGCGCTTGCCACCGCGGCCGTTGCGGCTGCGCACT
GGGCGCACACACAGCCGCACGTGGAGCGTGGTGCGGTGTTGTTAGCCGCG
CCAGACCATCACTGGCAGCCCGCGTTCGCGCATCTCAAGCGCTCCGTCAT
TCTTCTCACCGACGTGTCTGCCGGCGACGTGCGCGGTCTACTGCTCAACC
GACGCACGCGCTACAGCGTGCGTCAGCAGCGCAGCGTGCTGGCGCGTGTG
GGCGCTTGTTTTGGCGACAATGCGCTTTATCTCGGCGGCGATTGTTCCAC
AGGCTCTCTGGAGATGTTACATGCGCAGCCGCCGACGCTGTGCGCGGGCG
CGGCCGAGGTGGTGCCCGGCGTGTATCGCGGCGGTTTCAACGCCAGTCGC
GGCCTGGTGGCCGCCGGCACGCTGCCGCCGCACGCCTTCCGCTTCTTGGT
GGCCTACTCGCAGTGGACGCGCGCTACGCTGCGCGCCGAGCTGCAGCGCG
GCGCTTGGATCATTGTGAGCTGCTCGCCGTCGCTGCTGCTGCACGCGCAC
ACGCCCACGCTGTGGCGCACCATCATGCGTCTCATCTCATCTAGTTAG
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protein sequence of Gchil8217.t1

>Gchil8217.t1 ID=Gchil8217.t1|Name=Gchil8217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=266bp
MAFVSPVPLRLGRPRGCVRRVRSASSRCVSASAAADDAPSLSETLCTTDW
RAFRAQLAVNQRLRCQPPPHHAALATAAVAAAHWAHTQPHVERGAVLLAA
PDHHWQPAFAHLKRSVILLTDVSAGDVRGLLLNRRTRYSVRQQRSVLARV
GACFGDNALYLGGDCSTGSLEMLHAQPPTLCAGAAEVVPGVYRGGFNASR
GLVAAGTLPPHAFRFLVAYSQWTRATLRAELQRGAWIIVSCSPSLLLHAH
TPTLWRTIMRLISSS*
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mRNA from alignment at tig00004384_pilon:708405..709202-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8217.t1 ID=Gchil8217.t1|Name=Gchil8217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00004384_pilon:708405..709202- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTTTGTGTCGCCTGTGCCGTTGCGCCTTGGCAGGCCGCGAGGTTG
CGTGCGTCGTGTGCGGAGCGCTTCGTCGCGGTGCGTCTCGGCTTCGGCCG
CCGCGGACGACGCGCCGTCCTTGTCGGAGACGCTTTGTACCACCGACTGG
CGCGCCTTTCGCGCGCAGCTTGCCGTGAATCAACGGCTGCGATGCCAGCC
GCCGCCGCACCACGCGGCGCTTGCCACCGCGGCCGTTGCGGCTGCGCACT
GGGCGCACACACAGCCGCACGTGGAGCGTGGTGCGGTGTTGTTAGCCGCG
CCAGACCATCACTGGCAGCCCGCGTTCGCGCATCTCAAGCGCTCCGTCAT
TCTTCTCACCGACGTGTCTGCCGGCGACGTGCGCGGTCTACTGCTCAACC
GACGCACGCGCTACAGCGTGCGTCAGCAGCGCAGCGTGCTGGCGCGTGTG
GGCGCTTGTTTTGGCGACAATGCGCTTTATCTCGGCGGCGATTGTTCCAC
AGGCTCTCTGGAGATGTTACATGCGCAGCCGCCGACGCTGTGCGCGGGCG
CGGCCGAGGTGGTGCCCGGCGTGTATCGCGGCGGTTTCAACGCCAGTCGC
GGCCTGGTGGCCGCCGGCACGCTGCCGCCGCACGCCTTCCGCTTCTTGGT
GGCCTACTCGCAGTGGACGCGCGCTACGCTGCGCGCCGAGCTGCAGCGCG
GCGCTTGGATCATTGTGAGCTGCTCGCCGTCGCTGCTGCTGCACGCGCAC
ACGCCCACGCTGTGGCGCACCATCATGCGTCTCATCTCATCTAGTTAG
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Coding sequence (CDS) from alignment at tig00004384_pilon:708405..709202-

>Gchil8217.t1 ID=Gchil8217.t1|Name=Gchil8217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00004384_pilon:708405..709202- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTTTGTGTCGCCTGTGCCGTTGCGCCTTGGCAGGCCGCGAGGTTG
CGTGCGTCGTGTGCGGAGCGCTTCGTCGCGGTGCGTCTCGGCTTCGGCCG
CCGCGGACGACGCGCCGTCCTTGTCGGAGACGCTTTGTACCACCGACTGG
CGCGCCTTTCGCGCGCAGCTTGCCGTGAATCAACGGCTGCGATGCCAGCC
GCCGCCGCACCACGCGGCGCTTGCCACCGCGGCCGTTGCGGCTGCGCACT
GGGCGCACACACAGCCGCACGTGGAGCGTGGTGCGGTGTTGTTAGCCGCG
CCAGACCATCACTGGCAGCCCGCGTTCGCGCATCTCAAGCGCTCCGTCAT
TCTTCTCACCGACGTGTCTGCCGGCGACGTGCGCGGTCTACTGCTCAACC
GACGCACGCGCTACAGCGTGCGTCAGCAGCGCAGCGTGCTGGCGCGTGTG
GGCGCTTGTTTTGGCGACAATGCGCTTTATCTCGGCGGCGATTGTTCCAC
AGGCTCTCTGGAGATGTTACATGCGCAGCCGCCGACGCTGTGCGCGGGCG
CGGCCGAGGTGGTGCCCGGCGTGTATCGCGGCGGTTTCAACGCCAGTCGC
GGCCTGGTGGCCGCCGGCACGCTGCCGCCGCACGCCTTCCGCTTCTTGGT
GGCCTACTCGCAGTGGACGCGCGCTACGCTGCGCGCCGAGCTGCAGCGCG
GCGCTTGGATCATTGTGAGCTGCTCGCCGTCGCTGCTGCTGCACGCGCAC
ACGCCCACGCTGTGGCGCACCATCATGCGTCTCATCTCATCTAGTTAG
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