Gchil8266.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8266.t2
Unique Name	Gchil8266.t2
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	537

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:971305..972915 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707645.1
Preferred name	EIF3D
PFAMs	eIF-3_zeta
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02987,ko:K03251,ko:K10136
KEGG Pathway	ko03010,ko03013,ko04115,map03010,map03013,map04115
KEGG Module	M00177,M00179
GOs	GO:0000339,GO:0001732,GO:0002181,GO:0002183,GO:0002191,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005813,GO:0005815,GO:0005829,GO:0005852,GO:0005856,GO:0005911,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006464,GO:0006470,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0007154,GO:0007165,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009639,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010017,GO:0010019,GO:0010035,GO:0010038,GO:0010380,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0012505,GO:0015630,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016282,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0019080,GO:0019081,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030054,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032879,GO:0032880,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0042578,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045727,GO:0046686,GO:0046906,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051193,GO:0051195,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0060341,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070993,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0075522,GO:0075525,GO:0080090,GO:0090056,GO:0097159,GO:0098808,GO:0098827,GO:0104004,GO:0140096,GO:1900180,GO:1900182,GO:1901363,GO:1901401,GO:1901402,GO:1901463,GO:1901464,GO:1901564,GO:1901566,GO:1901576,GO:1902325,GO:1902415,GO:1902416,GO:1903827,GO:1903829,GO:1905214,GO:1905216,GO:1990904,GO:2000112
Evalue	3.25e-147
EggNOG OGs	KOG2479@1\|root,KOG2479@2759\|Eukaryota
Description	translation initiation factor activity
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011,ko03012

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8266	Gchil8266	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 971305..972915 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8266.t2.stop1	Gchil8266.t2.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 971305..971307 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8266.t2.CDS1	Gchil8266.t2.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 971305..972915 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8266.t2.exon1	Gchil8266.t2.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 971305..972915 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8266.t2.start1	Gchil8266.t2.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 972913..972915 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8266.t2	Gchil8266.t2	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 971305..972915 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:971305..972915-
coding sequence from alignment at tig00004384_pilon:971305..972915-

mRNA sequence

>Gchil8266.t2 ID=Gchil8266.t2|Name=Gchil8266.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=537bp
MATFQLPEIHDNPDGWGPPMDLAPKKFQDMPYAPFSKSDRLGRAADWTAY
SNRYGRDHTEDSSLDFTVVDNKIIPRQGHGRGRGGYRGNTRGRGGRYGDR
SGHDRDGNRRGGRGGKSNVRGSRGGYRPRWEDRRNIQREPSVEVGSDWQV
LEDISSTVLSKMSYNMQDEGQDIVTCGTIPFYDRSADRITAKTSKPLRIV
DVEYPRVTTTDDSIIRRIAGSGEGTVFATSSILAILMAAPRSVQSWDVIV
QRIGGKLFFDKRDGSMADFITVSETSHDPPKDEKSLSGEEAINSFQKLSE
EATRINENFIQNVVKARVYKYPEENPFLDEVEGKPANVAYKYRKWSMGDD
IVVVARCDLDAVFSPSSDTSRPVPITVRALNEYFDPTSRQSTDWRGKLDT
QRGAVLATEVKNNAAKLARWTTEAILANSSKIAFGFVSRARMNKNDSHVI
LGTQMYRPKDFASQIAFNLNNMWGVLKGIIDMCYRNLKDGEKGVFMKDPN
KPLLRLYRVPDDVFESEEEEEQEQEQDNPQQMGLFM*

spliced messenger RNA

>Gchil8266.t2 ID=Gchil8266.t2|Name=Gchil8266.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00004384_pilon:971305..972915- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACTTTCCAACTACCAGAGATACATGACAATCCAGATGGATGGGG
TCCCCCCATGGATCTAGCACCGAAGAAATTTCAAGATATGCCATACGCTC
CATTTTCCAAGTCGGACCGACTTGGTCGCGCAGCGGACTGGACAGCTTAT
AGCAATAGATATGGCCGAGACCACACCGAGGATTCGTCTCTTGATTTCAC
TGTTGTTGATAACAAGATTATTCCGCGTCAGGGACACGGTAGAGGTCGTG
GAGGATATCGCGGAAATACTAGGGGACGGGGCGGTCGCTACGGTGATCGA
AGTGGTCATGATCGAGACGGCAATCGCAGAGGAGGACGTGGCGGAAAAAG
CAATGTGCGAGGCAGCAGAGGTGGGTATCGCCCGCGATGGGAGGACCGCC
GGAATATTCAACGAGAGCCCAGCGTTGAAGTCGGTTCCGACTGGCAAGTA
CTGGAAGATATATCATCTACTGTCTTGTCGAAGATGTCCTACAATATGCA
AGACGAAGGCCAAGACATTGTCACTTGCGGAACTATTCCATTCTACGATC
GGAGCGCTGACCGCATCACCGCGAAAACCTCGAAGCCTTTGCGAATTGTT
GACGTGGAGTATCCTCGTGTCACAACTACGGACGATTCCATTATTCGACG
AATTGCTGGCAGCGGAGAAGGAACTGTGTTCGCAACAAGTTCAATTTTGG
CAATCCTCATGGCAGCCCCAAGATCAGTACAGAGCTGGGATGTCATCGTG
CAAAGAATTGGTGGTAAATTATTCTTTGACAAGCGAGATGGTTCAATGGC
CGACTTCATCACCGTGAGTGAAACGTCTCATGATCCTCCGAAGGATGAGA
AGAGCCTATCAGGAGAAGAAGCAATCAATTCGTTTCAAAAGCTCAGTGAG
GAAGCAACGCGTATCAACGAAAACTTCATTCAAAACGTTGTCAAAGCACG
AGTTTACAAATATCCGGAAGAGAACCCGTTTCTAGATGAAGTGGAAGGAA
AGCCCGCGAATGTGGCTTACAAGTACCGCAAATGGTCTATGGGTGATGAC
ATTGTGGTCGTTGCACGCTGTGATCTAGACGCTGTGTTTTCTCCCTCCTC
CGATACAAGTAGGCCCGTTCCGATCACTGTTCGGGCACTGAATGAATATT
TCGACCCAACTTCCAGACAGTCTACCGACTGGCGAGGGAAATTAGATACT
CAGCGAGGGGCAGTACTTGCGACCGAGGTGAAGAACAATGCAGCCAAATT
GGCGAGATGGACAACAGAGGCAATATTGGCCAACTCTTCCAAAATTGCAT
TCGGCTTTGTGTCTCGTGCAAGAATGAACAAGAATGACAGTCACGTTATT
CTTGGAACGCAGATGTATCGGCCGAAAGACTTTGCCAGTCAGATCGCGTT
TAACCTGAACAATATGTGGGGCGTACTCAAAGGTATCATCGATATGTGCT
ACAGGAATCTGAAAGACGGAGAAAAAGGAGTATTCATGAAAGATCCGAAC
AAGCCACTTCTTCGGTTGTATAGGGTACCAGATGACGTCTTTGAATCAGA
AGAGGAAGAAGAGCAAGAGCAAGAGCAAGACAATCCCCAGCAGATGGGGC
TTTTCATGTAA

protein sequence of Gchil8266.t2

>Gchil8266.t2 ID=Gchil8266.t2|Name=Gchil8266.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=537bp
MATFQLPEIHDNPDGWGPPMDLAPKKFQDMPYAPFSKSDRLGRAADWTAY
SNRYGRDHTEDSSLDFTVVDNKIIPRQGHGRGRGGYRGNTRGRGGRYGDR
SGHDRDGNRRGGRGGKSNVRGSRGGYRPRWEDRRNIQREPSVEVGSDWQV
LEDISSTVLSKMSYNMQDEGQDIVTCGTIPFYDRSADRITAKTSKPLRIV
DVEYPRVTTTDDSIIRRIAGSGEGTVFATSSILAILMAAPRSVQSWDVIV
QRIGGKLFFDKRDGSMADFITVSETSHDPPKDEKSLSGEEAINSFQKLSE
EATRINENFIQNVVKARVYKYPEENPFLDEVEGKPANVAYKYRKWSMGDD
IVVVARCDLDAVFSPSSDTSRPVPITVRALNEYFDPTSRQSTDWRGKLDT
QRGAVLATEVKNNAAKLARWTTEAILANSSKIAFGFVSRARMNKNDSHVI
LGTQMYRPKDFASQIAFNLNNMWGVLKGIIDMCYRNLKDGEKGVFMKDPN
KPLLRLYRVPDDVFESEEEEEQEQEQDNPQQMGLFM*

mRNA from alignment at tig00004384_pilon:971305..972915-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8266.t2 ID=Gchil8266.t2|Name=Gchil8266.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00004384_pilon:971305..972915- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGACTTTCCAACTACCAGAGATACATGACAATCCAGATGGATGGGG
TCCCCCCATGGATCTAGCACCGAAGAAATTTCAAGATATGCCATACGCTC
CATTTTCCAAGTCGGACCGACTTGGTCGCGCAGCGGACTGGACAGCTTAT
AGCAATAGATATGGCCGAGACCACACCGAGGATTCGTCTCTTGATTTCAC
TGTTGTTGATAACAAGATTATTCCGCGTCAGGGACACGGTAGAGGTCGTG
GAGGATATCGCGGAAATACTAGGGGACGGGGCGGTCGCTACGGTGATCGA
AGTGGTCATGATCGAGACGGCAATCGCAGAGGAGGACGTGGCGGAAAAAG
CAATGTGCGAGGCAGCAGAGGTGGGTATCGCCCGCGATGGGAGGACCGCC
GGAATATTCAACGAGAGCCCAGCGTTGAAGTCGGTTCCGACTGGCAAGTA
CTGGAAGATATATCATCTACTGTCTTGTCGAAGATGTCCTACAATATGCA
AGACGAAGGCCAAGACATTGTCACTTGCGGAACTATTCCATTCTACGATC
GGAGCGCTGACCGCATCACCGCGAAAACCTCGAAGCCTTTGCGAATTGTT
GACGTGGAGTATCCTCGTGTCACAACTACGGACGATTCCATTATTCGACG
AATTGCTGGCAGCGGAGAAGGAACTGTGTTCGCAACAAGTTCAATTTTGG
CAATCCTCATGGCAGCCCCAAGATCAGTACAGAGCTGGGATGTCATCGTG
CAAAGAATTGGTGGTAAATTATTCTTTGACAAGCGAGATGGTTCAATGGC
CGACTTCATCACCGTGAGTGAAACGTCTCATGATCCTCCGAAGGATGAGA
AGAGCCTATCAGGAGAAGAAGCAATCAATTCGTTTCAAAAGCTCAGTGAG
GAAGCAACGCGTATCAACGAAAACTTCATTCAAAACGTTGTCAAAGCACG
AGTTTACAAATATCCGGAAGAGAACCCGTTTCTAGATGAAGTGGAAGGAA
AGCCCGCGAATGTGGCTTACAAGTACCGCAAATGGTCTATGGGTGATGAC
ATTGTGGTCGTTGCACGCTGTGATCTAGACGCTGTGTTTTCTCCCTCCTC
CGATACAAGTAGGCCCGTTCCGATCACTGTTCGGGCACTGAATGAATATT
TCGACCCAACTTCCAGACAGTCTACCGACTGGCGAGGGAAATTAGATACT
CAGCGAGGGGCAGTACTTGCGACCGAGGTGAAGAACAATGCAGCCAAATT
GGCGAGATGGACAACAGAGGCAATATTGGCCAACTCTTCCAAAATTGCAT
TCGGCTTTGTGTCTCGTGCAAGAATGAACAAGAATGACAGTCACGTTATT
CTTGGAACGCAGATGTATCGGCCGAAAGACTTTGCCAGTCAGATCGCGTT
TAACCTGAACAATATGTGGGGCGTACTCAAAGGTATCATCGATATGTGCT
ACAGGAATCTGAAAGACGGAGAAAAAGGAGTATTCATGAAAGATCCGAAC
AAGCCACTTCTTCGGTTGTATAGGGTACCAGATGACGTCTTTGAATCAGA
AGAGGAAGAAGAGCAAGAGCAAGAGCAAGACAATCCCCAGCAGATGGGGC
TTTTCATGTAA

Coding sequence (CDS) from alignment at tig00004384_pilon:971305..972915-

>Gchil8266.t2 ID=Gchil8266.t2|Name=Gchil8266.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1611bp|location=Sequence derived from alignment at tig00004384_pilon:971305..972915- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGACTTTCCAACTACCAGAGATACATGACAATCCAGATGGATGGGG
TCCCCCCATGGATCTAGCACCGAAGAAATTTCAAGATATGCCATACGCTC
CATTTTCCAAGTCGGACCGACTTGGTCGCGCAGCGGACTGGACAGCTTAT
AGCAATAGATATGGCCGAGACCACACCGAGGATTCGTCTCTTGATTTCAC
TGTTGTTGATAACAAGATTATTCCGCGTCAGGGACACGGTAGAGGTCGTG
GAGGATATCGCGGAAATACTAGGGGACGGGGCGGTCGCTACGGTGATCGA
AGTGGTCATGATCGAGACGGCAATCGCAGAGGAGGACGTGGCGGAAAAAG
CAATGTGCGAGGCAGCAGAGGTGGGTATCGCCCGCGATGGGAGGACCGCC
GGAATATTCAACGAGAGCCCAGCGTTGAAGTCGGTTCCGACTGGCAAGTA
CTGGAAGATATATCATCTACTGTCTTGTCGAAGATGTCCTACAATATGCA
AGACGAAGGCCAAGACATTGTCACTTGCGGAACTATTCCATTCTACGATC
GGAGCGCTGACCGCATCACCGCGAAAACCTCGAAGCCTTTGCGAATTGTT
GACGTGGAGTATCCTCGTGTCACAACTACGGACGATTCCATTATTCGACG
AATTGCTGGCAGCGGAGAAGGAACTGTGTTCGCAACAAGTTCAATTTTGG
CAATCCTCATGGCAGCCCCAAGATCAGTACAGAGCTGGGATGTCATCGTG
CAAAGAATTGGTGGTAAATTATTCTTTGACAAGCGAGATGGTTCAATGGC
CGACTTCATCACCGTGAGTGAAACGTCTCATGATCCTCCGAAGGATGAGA
AGAGCCTATCAGGAGAAGAAGCAATCAATTCGTTTCAAAAGCTCAGTGAG
GAAGCAACGCGTATCAACGAAAACTTCATTCAAAACGTTGTCAAAGCACG
AGTTTACAAATATCCGGAAGAGAACCCGTTTCTAGATGAAGTGGAAGGAA
AGCCCGCGAATGTGGCTTACAAGTACCGCAAATGGTCTATGGGTGATGAC
ATTGTGGTCGTTGCACGCTGTGATCTAGACGCTGTGTTTTCTCCCTCCTC
CGATACAAGTAGGCCCGTTCCGATCACTGTTCGGGCACTGAATGAATATT
TCGACCCAACTTCCAGACAGTCTACCGACTGGCGAGGGAAATTAGATACT
CAGCGAGGGGCAGTACTTGCGACCGAGGTGAAGAACAATGCAGCCAAATT
GGCGAGATGGACAACAGAGGCAATATTGGCCAACTCTTCCAAAATTGCAT
TCGGCTTTGTGTCTCGTGCAAGAATGAACAAGAATGACAGTCACGTTATT
CTTGGAACGCAGATGTATCGGCCGAAAGACTTTGCCAGTCAGATCGCGTT
TAACCTGAACAATATGTGGGGCGTACTCAAAGGTATCATCGATATGTGCT
ACAGGAATCTGAAAGACGGAGAAAAAGGAGTATTCATGAAAGATCCGAAC
AAGCCACTTCTTCGGTTGTATAGGGTACCAGATGACGTCTTTGAATCAGA
AGAGGAAGAAGAGCAAGAGCAAGAGCAAGACAATCCCCAGCAGATGGGGC
TTTTCATGTAA