Gchil3250.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3250.t1
Unique NameGchil3250.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length399
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1231184..1232380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2KAL1
PFAMsRabGAP-TBC
Max annot lvl4751|Fungi
Evalue1.32e-38
EggNOG OGsKOG1092@1|root,KOG1092@2759|Eukaryota,39YH6@33154|Opisthokonta,3P1NW@4751|Fungi,1GTC9@112252|Fungi incertae sedis
DescriptionDomain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs.
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3250Gchil3250Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1231184..1232380 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3250.t1.stop1Gchil3250.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1231184..1231186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3250.t1.CDS1Gchil3250.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1231184..1232380 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3250.t1.exon1Gchil3250.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1231184..1232380 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3250.t1.start1Gchil3250.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1232378..1232380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3250.t1Gchil3250.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1231184..1232380 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3250.t1 ID=Gchil3250.t1|Name=Gchil3250.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=399bp
MPQPALSPPILLTRDAPLSPLALSMHSPRPDHRTPSSSACASPPELPPLG
ADLHAREFHVLLDADAAVDESKIRRAASSGVPPLMRERVWKLLLGVSSFD
TADDLSLHLNRTHSYNASSATIDQHDYVPSRIRRVLKRAPTVYQPLPTHD
RRLRPDSLSSESFDGDDDDDDSLDAHRPSTPLSLSRNMTLTPSTYAKASQ
RKRSQVVDLQIQLKFIRIITTYLNTAPQDVQYHDDMVYLCAPFIEIMPAE
ADAFHAFSALMRTCQHLYTEHGLKEAVADFNLLLRDALPNLYDKFVVEEV
DMNRFVCQWLRALLVHQLPRRCLLRLWDSYFANLEKDSLSLHPYVCLVFI
GRLDQELEECEDSERILSLLSKIPAADIDHVVAHAHTTRERLREKGIV*
back to top

spliced messenger RNA

>Gchil3250.t1 ID=Gchil3250.t1|Name=Gchil3250.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00004382_pilon:1231184..1232380- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCAGCCAGCGCTGTCACCCCCCATTCTTCTCACGCGAGACGCCCC
TCTCAGTCCGCTCGCGCTGAGCATGCACTCGCCGCGCCCCGACCATCGCA
CTCCGTCTTCCTCTGCCTGTGCCTCCCCGCCCGAGCTCCCGCCTCTAGGC
GCCGATTTGCACGCCCGCGAGTTTCATGTGTTGCTTGATGCTGATGCCGC
CGTCGATGAGTCAAAGATTCGTCGCGCCGCCTCGTCGGGCGTGCCGCCAC
TTATGCGAGAGCGTGTGTGGAAGCTTTTGTTGGGCGTCTCCTCCTTTGAT
ACTGCTGATGACCTTTCCTTGCACCTAAATCGCACCCATTCTTACAATGC
CTCCAGCGCTACCATCGATCAGCATGATTACGTTCCCAGTCGCATCCGAC
GCGTCTTGAAGAGGGCCCCTACCGTGTATCAACCACTTCCTACCCATGAC
CGCCGCTTGCGCCCCGACTCCTTGAGCAGCGAAAGCTTTGATGGCGATGA
CGATGACGACGATTCTCTGGATGCTCATCGCCCCTCCACCCCGCTGTCTT
TATCGCGCAATATGACTCTCACCCCATCCACTTATGCTAAGGCGTCGCAG
CGCAAGCGTTCCCAAGTCGTCGATCTCCAAATTCAGTTAAAGTTCATCCG
CATCATAACCACATATCTTAACACAGCTCCTCAAGATGTGCAATATCACG
ATGATATGGTGTACCTCTGTGCACCCTTCATAGAAATTATGCCCGCAGAA
GCCGACGCATTTCACGCATTTTCTGCCCTCATGAGGACATGTCAACATCT
GTACACTGAACATGGTCTCAAGGAAGCCGTCGCCGACTTCAATCTTTTGT
TACGAGATGCCCTCCCCAATCTTTACGACAAATTTGTCGTAGAAGAAGTC
GATATGAATCGATTCGTCTGTCAATGGCTACGTGCCCTTCTCGTTCATCA
GCTACCACGTCGATGTTTGTTGCGTCTTTGGGACTCTTATTTTGCAAATC
TCGAAAAAGACTCTCTTTCTTTACATCCATACGTTTGTCTCGTTTTCATC
GGACGTCTGGATCAGGAACTGGAAGAGTGTGAAGATTCCGAGCGCATTTT
AAGTCTTCTTTCAAAGATACCAGCCGCTGATATCGATCACGTAGTCGCTC
ATGCTCACACTACAAGGGAGCGTCTGCGGGAAAAAGGCATCGTGTGA
back to top

protein sequence of Gchil3250.t1

>Gchil3250.t1 ID=Gchil3250.t1|Name=Gchil3250.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=399bp
MPQPALSPPILLTRDAPLSPLALSMHSPRPDHRTPSSSACASPPELPPLG
ADLHAREFHVLLDADAAVDESKIRRAASSGVPPLMRERVWKLLLGVSSFD
TADDLSLHLNRTHSYNASSATIDQHDYVPSRIRRVLKRAPTVYQPLPTHD
RRLRPDSLSSESFDGDDDDDDSLDAHRPSTPLSLSRNMTLTPSTYAKASQ
RKRSQVVDLQIQLKFIRIITTYLNTAPQDVQYHDDMVYLCAPFIEIMPAE
ADAFHAFSALMRTCQHLYTEHGLKEAVADFNLLLRDALPNLYDKFVVEEV
DMNRFVCQWLRALLVHQLPRRCLLRLWDSYFANLEKDSLSLHPYVCLVFI
GRLDQELEECEDSERILSLLSKIPAADIDHVVAHAHTTRERLREKGIV*
back to top

mRNA from alignment at tig00004382_pilon:1231184..1232380-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3250.t1 ID=Gchil3250.t1|Name=Gchil3250.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00004382_pilon:1231184..1232380- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCAGCCAGCGCTGTCACCCCCCATTCTTCTCACGCGAGACGCCCC
TCTCAGTCCGCTCGCGCTGAGCATGCACTCGCCGCGCCCCGACCATCGCA
CTCCGTCTTCCTCTGCCTGTGCCTCCCCGCCCGAGCTCCCGCCTCTAGGC
GCCGATTTGCACGCCCGCGAGTTTCATGTGTTGCTTGATGCTGATGCCGC
CGTCGATGAGTCAAAGATTCGTCGCGCCGCCTCGTCGGGCGTGCCGCCAC
TTATGCGAGAGCGTGTGTGGAAGCTTTTGTTGGGCGTCTCCTCCTTTGAT
ACTGCTGATGACCTTTCCTTGCACCTAAATCGCACCCATTCTTACAATGC
CTCCAGCGCTACCATCGATCAGCATGATTACGTTCCCAGTCGCATCCGAC
GCGTCTTGAAGAGGGCCCCTACCGTGTATCAACCACTTCCTACCCATGAC
CGCCGCTTGCGCCCCGACTCCTTGAGCAGCGAAAGCTTTGATGGCGATGA
CGATGACGACGATTCTCTGGATGCTCATCGCCCCTCCACCCCGCTGTCTT
TATCGCGCAATATGACTCTCACCCCATCCACTTATGCTAAGGCGTCGCAG
CGCAAGCGTTCCCAAGTCGTCGATCTCCAAATTCAGTTAAAGTTCATCCG
CATCATAACCACATATCTTAACACAGCTCCTCAAGATGTGCAATATCACG
ATGATATGGTGTACCTCTGTGCACCCTTCATAGAAATTATGCCCGCAGAA
GCCGACGCATTTCACGCATTTTCTGCCCTCATGAGGACATGTCAACATCT
GTACACTGAACATGGTCTCAAGGAAGCCGTCGCCGACTTCAATCTTTTGT
TACGAGATGCCCTCCCCAATCTTTACGACAAATTTGTCGTAGAAGAAGTC
GATATGAATCGATTCGTCTGTCAATGGCTACGTGCCCTTCTCGTTCATCA
GCTACCACGTCGATGTTTGTTGCGTCTTTGGGACTCTTATTTTGCAAATC
TCGAAAAAGACTCTCTTTCTTTACATCCATACGTTTGTCTCGTTTTCATC
GGACGTCTGGATCAGGAACTGGAAGAGTGTGAAGATTCCGAGCGCATTTT
AAGTCTTCTTTCAAAGATACCAGCCGCTGATATCGATCACGTAGTCGCTC
ATGCTCACACTACAAGGGAGCGTCTGCGGGAAAAAGGCATCGTGTGA
back to top

Coding sequence (CDS) from alignment at tig00004382_pilon:1231184..1232380-

>Gchil3250.t1 ID=Gchil3250.t1|Name=Gchil3250.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1197bp|location=Sequence derived from alignment at tig00004382_pilon:1231184..1232380- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCAGCCAGCGCTGTCACCCCCCATTCTTCTCACGCGAGACGCCCC
TCTCAGTCCGCTCGCGCTGAGCATGCACTCGCCGCGCCCCGACCATCGCA
CTCCGTCTTCCTCTGCCTGTGCCTCCCCGCCCGAGCTCCCGCCTCTAGGC
GCCGATTTGCACGCCCGCGAGTTTCATGTGTTGCTTGATGCTGATGCCGC
CGTCGATGAGTCAAAGATTCGTCGCGCCGCCTCGTCGGGCGTGCCGCCAC
TTATGCGAGAGCGTGTGTGGAAGCTTTTGTTGGGCGTCTCCTCCTTTGAT
ACTGCTGATGACCTTTCCTTGCACCTAAATCGCACCCATTCTTACAATGC
CTCCAGCGCTACCATCGATCAGCATGATTACGTTCCCAGTCGCATCCGAC
GCGTCTTGAAGAGGGCCCCTACCGTGTATCAACCACTTCCTACCCATGAC
CGCCGCTTGCGCCCCGACTCCTTGAGCAGCGAAAGCTTTGATGGCGATGA
CGATGACGACGATTCTCTGGATGCTCATCGCCCCTCCACCCCGCTGTCTT
TATCGCGCAATATGACTCTCACCCCATCCACTTATGCTAAGGCGTCGCAG
CGCAAGCGTTCCCAAGTCGTCGATCTCCAAATTCAGTTAAAGTTCATCCG
CATCATAACCACATATCTTAACACAGCTCCTCAAGATGTGCAATATCACG
ATGATATGGTGTACCTCTGTGCACCCTTCATAGAAATTATGCCCGCAGAA
GCCGACGCATTTCACGCATTTTCTGCCCTCATGAGGACATGTCAACATCT
GTACACTGAACATGGTCTCAAGGAAGCCGTCGCCGACTTCAATCTTTTGT
TACGAGATGCCCTCCCCAATCTTTACGACAAATTTGTCGTAGAAGAAGTC
GATATGAATCGATTCGTCTGTCAATGGCTACGTGCCCTTCTCGTTCATCA
GCTACCACGTCGATGTTTGTTGCGTCTTTGGGACTCTTATTTTGCAAATC
TCGAAAAAGACTCTCTTTCTTTACATCCATACGTTTGTCTCGTTTTCATC
GGACGTCTGGATCAGGAACTGGAAGAGTGTGAAGATTCCGAGCGCATTTT
AAGTCTTCTTTCAAAGATACCAGCCGCTGATATCGATCACGTAGTCGCTC
ATGCTCACACTACAAGGGAGCGTCTGCGGGAAAAAGGCATCGTGTGA
back to top