Gchil3216.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3216.t1
Unique NameGchil3216.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1045760..1047049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4572.TRIUR3_07142-P1
PFAMsCwfJ_C_1,CwfJ_C_2,zf-CCCH
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue6.99e-25
EggNOG OGsKOG2476@1|root,KOG4658@1|root,KOG2476@2759|Eukaryota,KOG4658@2759|Eukaryota,37IYE@33090|Viridiplantae,3GCXX@35493|Streptophyta,3KNJY@4447|Liliopsida,3I5N0@38820|Poales
Descriptionzinc finger CCCH domain-containing protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3216Gchil3216Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1045760..1047049 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3216.t1.stop1Gchil3216.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1045760..1045762 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3216.t1.CDS1Gchil3216.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1045760..1047049 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3216.t1.exon1Gchil3216.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1045760..1047049 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3216.t1.start1Gchil3216.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1047047..1047049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3216.t1Gchil3216.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1045760..1047049 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3216.t1 ID=Gchil3216.t1|Name=Gchil3216.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=430bp
MVRVLVVNPGLDFEIIVPKLEKLSKQKGCFHVILLLSPPSAACTMPIPTY
FAANSFAESDERRSVAENLHYVGPSALKIVNGLAILLVAPGAESMFNAKV
DVLVSSAPSGVGSDEKCARLGLRVKPKYHFFGGEAFEKYEPFVLKGCSYA
TRMIQVAEMGSGKWLFAADITPIAEIGERETASGKMLYEVERSRPQKRRK
QECWFCLANEVEKHLVTYVGKEVYVALAKGGLNRSHFVIVPVRHVTSCIE
IRNETVEEIEHVMDGIGQYYKQKYEGEGFFFERVVGSEQQLENDKEKRRI
MHMCIQAIAIKKSKSEALVEEIKNVGEQVGFEGVEVATAGDGKHGSCMRE
VRRNGWRDAFWAQLTSGGRVVVECSEKRSIPSIFGRVVAARVLGTPQRVA
WRECVLTKEKEQAMAEEVAVELDDFIKGE*
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spliced messenger RNA

>Gchil3216.t1 ID=Gchil3216.t1|Name=Gchil3216.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00004382_pilon:1045760..1047049- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGCGTGCTCGTGGTGAATCCTGGTTTGGACTTTGAGATAATCGT
GCCGAAGCTTGAGAAATTAAGCAAACAGAAGGGTTGCTTTCATGTGATAC
TGCTTCTTTCGCCACCATCAGCAGCCTGTACAATGCCGATTCCAACCTAT
TTTGCAGCAAACAGTTTCGCCGAATCCGACGAAAGACGAAGTGTGGCAGA
AAACCTGCATTACGTGGGACCGAGCGCGCTGAAGATAGTAAATGGCTTGG
CTATACTGCTGGTAGCTCCGGGAGCTGAAAGCATGTTCAATGCGAAGGTA
GATGTACTTGTGAGTAGCGCACCGTCAGGTGTAGGGAGTGATGAGAAGTG
TGCGAGACTGGGGTTGCGCGTTAAGCCAAAATATCACTTTTTTGGTGGAG
AGGCGTTCGAGAAGTACGAGCCTTTCGTGCTCAAGGGGTGTTCATATGCT
ACTAGAATGATACAAGTGGCTGAGATGGGGTCCGGAAAGTGGTTGTTTGC
TGCGGACATTACACCCATTGCGGAAATAGGAGAAAGGGAGACTGCAAGTG
GGAAAATGCTGTACGAGGTGGAAAGATCGCGACCGCAGAAACGAAGAAAG
CAGGAATGTTGGTTTTGTCTGGCGAACGAAGTTGAGAAGCATCTTGTGAC
ATATGTGGGAAAAGAGGTGTATGTGGCTCTTGCAAAAGGAGGACTGAACA
GAAGTCACTTTGTGATTGTGCCGGTGAGACATGTAACAAGCTGCATTGAA
ATCAGAAATGAAACTGTGGAAGAAATAGAACACGTCATGGACGGGATTGG
ACAGTATTATAAACAGAAATATGAGGGGGAAGGATTCTTCTTTGAGAGAG
TTGTGGGTAGCGAACAACAATTGGAAAACGACAAGGAGAAGAGAAGAATT
ATGCACATGTGCATACAAGCGATAGCTATCAAGAAGTCGAAAAGCGAAGC
GCTGGTGGAAGAAATTAAGAATGTTGGGGAACAAGTCGGGTTTGAGGGTG
TGGAAGTTGCAACAGCTGGTGACGGGAAGCATGGGAGCTGCATGCGTGAA
GTGCGGCGAAATGGGTGGCGCGACGCGTTCTGGGCGCAGCTAACATCCGG
AGGACGAGTAGTCGTGGAATGTAGCGAAAAACGATCAATACCGTCCATTT
TTGGGCGAGTGGTAGCTGCACGAGTGCTGGGCACACCGCAGCGCGTGGCA
TGGAGGGAATGTGTATTGACAAAGGAAAAGGAGCAAGCGATGGCAGAAGA
GGTGGCGGTAGAGTTGGACGACTTTATCAAGGGCGAATAA
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protein sequence of Gchil3216.t1

>Gchil3216.t1 ID=Gchil3216.t1|Name=Gchil3216.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=430bp
MVRVLVVNPGLDFEIIVPKLEKLSKQKGCFHVILLLSPPSAACTMPIPTY
FAANSFAESDERRSVAENLHYVGPSALKIVNGLAILLVAPGAESMFNAKV
DVLVSSAPSGVGSDEKCARLGLRVKPKYHFFGGEAFEKYEPFVLKGCSYA
TRMIQVAEMGSGKWLFAADITPIAEIGERETASGKMLYEVERSRPQKRRK
QECWFCLANEVEKHLVTYVGKEVYVALAKGGLNRSHFVIVPVRHVTSCIE
IRNETVEEIEHVMDGIGQYYKQKYEGEGFFFERVVGSEQQLENDKEKRRI
MHMCIQAIAIKKSKSEALVEEIKNVGEQVGFEGVEVATAGDGKHGSCMRE
VRRNGWRDAFWAQLTSGGRVVVECSEKRSIPSIFGRVVAARVLGTPQRVA
WRECVLTKEKEQAMAEEVAVELDDFIKGE*
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mRNA from alignment at tig00004382_pilon:1045760..1047049-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3216.t1 ID=Gchil3216.t1|Name=Gchil3216.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00004382_pilon:1045760..1047049- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCGCGTGCTCGTGGTGAATCCTGGTTTGGACTTTGAGATAATCGT
GCCGAAGCTTGAGAAATTAAGCAAACAGAAGGGTTGCTTTCATGTGATAC
TGCTTCTTTCGCCACCATCAGCAGCCTGTACAATGCCGATTCCAACCTAT
TTTGCAGCAAACAGTTTCGCCGAATCCGACGAAAGACGAAGTGTGGCAGA
AAACCTGCATTACGTGGGACCGAGCGCGCTGAAGATAGTAAATGGCTTGG
CTATACTGCTGGTAGCTCCGGGAGCTGAAAGCATGTTCAATGCGAAGGTA
GATGTACTTGTGAGTAGCGCACCGTCAGGTGTAGGGAGTGATGAGAAGTG
TGCGAGACTGGGGTTGCGCGTTAAGCCAAAATATCACTTTTTTGGTGGAG
AGGCGTTCGAGAAGTACGAGCCTTTCGTGCTCAAGGGGTGTTCATATGCT
ACTAGAATGATACAAGTGGCTGAGATGGGGTCCGGAAAGTGGTTGTTTGC
TGCGGACATTACACCCATTGCGGAAATAGGAGAAAGGGAGACTGCAAGTG
GGAAAATGCTGTACGAGGTGGAAAGATCGCGACCGCAGAAACGAAGAAAG
CAGGAATGTTGGTTTTGTCTGGCGAACGAAGTTGAGAAGCATCTTGTGAC
ATATGTGGGAAAAGAGGTGTATGTGGCTCTTGCAAAAGGAGGACTGAACA
GAAGTCACTTTGTGATTGTGCCGGTGAGACATGTAACAAGCTGCATTGAA
ATCAGAAATGAAACTGTGGAAGAAATAGAACACGTCATGGACGGGATTGG
ACAGTATTATAAACAGAAATATGAGGGGGAAGGATTCTTCTTTGAGAGAG
TTGTGGGTAGCGAACAACAATTGGAAAACGACAAGGAGAAGAGAAGAATT
ATGCACATGTGCATACAAGCGATAGCTATCAAGAAGTCGAAAAGCGAAGC
GCTGGTGGAAGAAATTAAGAATGTTGGGGAACAAGTCGGGTTTGAGGGTG
TGGAAGTTGCAACAGCTGGTGACGGGAAGCATGGGAGCTGCATGCGTGAA
GTGCGGCGAAATGGGTGGCGCGACGCGTTCTGGGCGCAGCTAACATCCGG
AGGACGAGTAGTCGTGGAATGTAGCGAAAAACGATCAATACCGTCCATTT
TTGGGCGAGTGGTAGCTGCACGAGTGCTGGGCACACCGCAGCGCGTGGCA
TGGAGGGAATGTGTATTGACAAAGGAAAAGGAGCAAGCGATGGCAGAAGA
GGTGGCGGTAGAGTTGGACGACTTTATCAAGGGCGAATAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:1045760..1047049-

>Gchil3216.t1 ID=Gchil3216.t1|Name=Gchil3216.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00004382_pilon:1045760..1047049- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCGCGTGCTCGTGGTGAATCCTGGTTTGGACTTTGAGATAATCGT
GCCGAAGCTTGAGAAATTAAGCAAACAGAAGGGTTGCTTTCATGTGATAC
TGCTTCTTTCGCCACCATCAGCAGCCTGTACAATGCCGATTCCAACCTAT
TTTGCAGCAAACAGTTTCGCCGAATCCGACGAAAGACGAAGTGTGGCAGA
AAACCTGCATTACGTGGGACCGAGCGCGCTGAAGATAGTAAATGGCTTGG
CTATACTGCTGGTAGCTCCGGGAGCTGAAAGCATGTTCAATGCGAAGGTA
GATGTACTTGTGAGTAGCGCACCGTCAGGTGTAGGGAGTGATGAGAAGTG
TGCGAGACTGGGGTTGCGCGTTAAGCCAAAATATCACTTTTTTGGTGGAG
AGGCGTTCGAGAAGTACGAGCCTTTCGTGCTCAAGGGGTGTTCATATGCT
ACTAGAATGATACAAGTGGCTGAGATGGGGTCCGGAAAGTGGTTGTTTGC
TGCGGACATTACACCCATTGCGGAAATAGGAGAAAGGGAGACTGCAAGTG
GGAAAATGCTGTACGAGGTGGAAAGATCGCGACCGCAGAAACGAAGAAAG
CAGGAATGTTGGTTTTGTCTGGCGAACGAAGTTGAGAAGCATCTTGTGAC
ATATGTGGGAAAAGAGGTGTATGTGGCTCTTGCAAAAGGAGGACTGAACA
GAAGTCACTTTGTGATTGTGCCGGTGAGACATGTAACAAGCTGCATTGAA
ATCAGAAATGAAACTGTGGAAGAAATAGAACACGTCATGGACGGGATTGG
ACAGTATTATAAACAGAAATATGAGGGGGAAGGATTCTTCTTTGAGAGAG
TTGTGGGTAGCGAACAACAATTGGAAAACGACAAGGAGAAGAGAAGAATT
ATGCACATGTGCATACAAGCGATAGCTATCAAGAAGTCGAAAAGCGAAGC
GCTGGTGGAAGAAATTAAGAATGTTGGGGAACAAGTCGGGTTTGAGGGTG
TGGAAGTTGCAACAGCTGGTGACGGGAAGCATGGGAGCTGCATGCGTGAA
GTGCGGCGAAATGGGTGGCGCGACGCGTTCTGGGCGCAGCTAACATCCGG
AGGACGAGTAGTCGTGGAATGTAGCGAAAAACGATCAATACCGTCCATTT
TTGGGCGAGTGGTAGCTGCACGAGTGCTGGGCACACCGCAGCGCGTGGCA
TGGAGGGAATGTGTATTGACAAAGGAAAAGGAGCAAGCGATGGCAGAAGA
GGTGGCGGTAGAGTTGGACGACTTTATCAAGGGCGAATAA
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