Gchil3213.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3213.t1
Unique NameGchil3213.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length99
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1036908..1037293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3213Gchil3213Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1036908..1037293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3213.t1Gchil3213.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1036908..1037293 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3213.t1.stop1Gchil3213.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1036908..1036910 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3213.t1.CDS1Gchil3213.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1036908..1036992 -
Gchil3213.t1.CDS2Gchil3213.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1037082..1037293 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3213.t1.exon1Gchil3213.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1036908..1036992 -
Gchil3213.t1.exon2Gchil3213.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1037082..1037293 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3213.t1.intron1Gchil3213.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 1036993..1037081 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3213.t1.start1Gchil3213.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1037291..1037293 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3213.t1 ID=Gchil3213.t1|Name=Gchil3213.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=99bp
MASETASPSFGCEKWADCSCAAGGGKCGCGASCGCGSVLISDVMKAMETE
CNKADCQCGPYCHCGKDSCQCSGNVQRTPAQWVEFVKHSKSMENSPTS*
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spliced messenger RNA

>Gchil3213.t1 ID=Gchil3213.t1|Name=Gchil3213.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=297bp|location=Sequence derived from alignment at tig00004382_pilon:1036908..1037293- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCTGAAACTGCCTCGCCGTCCTTTGGTTGTGAGAAGTGGGCCGA
TTGCAGCTGCGCTGCTGGCGGCGGCAAGTGTGGTTGTGGTGCTTCTTGTG
GGTGTGGCTCTGTGCTAATCAGCGATGTCATGAAAGCCATGGAAACTGAA
TGCAATAAGGCTGACTGCCAGTGTGGTCCTTATTGTCATTGTGGAAAGGA
TTCCTGTCAGTGCAGTGGAAACGTGCAGAGAACTCCGGCTCAATGGGTTG
AGTTCGTCAAACACTCCAAGTCCATGGAAAACTCACCCACATCTTAG
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protein sequence of Gchil3213.t1

>Gchil3213.t1 ID=Gchil3213.t1|Name=Gchil3213.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=99bp
MASETASPSFGCEKWADCSCAAGGGKCGCGASCGCGSVLISDVMKAMETE
CNKADCQCGPYCHCGKDSCQCSGNVQRTPAQWVEFVKHSKSMENSPTS*
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mRNA from alignment at tig00004382_pilon:1036908..1037293-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3213.t1 ID=Gchil3213.t1|Name=Gchil3213.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=386bp|location=Sequence derived from alignment at tig00004382_pilon:1036908..1037293- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTCTGAAACTGCCTCGCCGTCCTTTGGTTGTGAGAAGTGGGCCGA
TTGCAGCTGCGCTGCTGGCGGCGGCAAGTGTGGTTGTGGTGCTTCTTGTG
GGTGTGGCTCTGTGCTAATCAGCGATGTCATGAAAGCCATGGAAACTGAA
TGCAATAAGGCTGACTGCCAGTGTGGTCCTTATTGTCATTGTGGAAAGGA
TTCCTGTCAGTGGTAAGTCTACCCTTTACCCGCCTGTCGCTCGTTCGTGG
TCCAGCTACTAACCATATATGTTTTCCACGACTACTACTCTCGTACAATA
GCAGTGGAAACGTGCAGAGAACTCCGGCTCAATGGGTTGAGTTCGTCAAA
CACTCCAAGTCCATGGAAAACTCACCCACATCTTAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:1036908..1037293-

>Gchil3213.t1 ID=Gchil3213.t1|Name=Gchil3213.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=297bp|location=Sequence derived from alignment at tig00004382_pilon:1036908..1037293- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTCTGAAACTGCCTCGCCGTCCTTTGGTTGTGAGAAGTGGGCCGA
TTGCAGCTGCGCTGCTGGCGGCGGCAAGTGTGGTTGTGGTGCTTCTTGTG
GGTGTGGCTCTGTGCTAATCAGCGATGTCATGAAAGCCATGGAAACTGAA
TGCAATAAGGCTGACTGCCAGTGTGGTCCTTATTGTCATTGTGGAAAGGA
TTCCTGTCAGTGCAGTGGAAACGTGCAGAGAACTCCGGCTCAATGGGTTG
AGTTCGTCAAACACTCCAAGTCCATGGAAAACTCACCCACATCTTAG
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