Gchil3101.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3101.t1
Unique NameGchil3101.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:78399..79368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps25570
Max annot lvl2836|Bacillariophyta
Evalue5.42e-21
EggNOG OGs2E04B@1|root,2S7JZ@2759|Eukaryota,2XBZ3@2836|Bacillariophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3101Gchil3101Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 78399..79368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3101.t1Gchil3101.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 78399..79368 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3101.t1.stop1Gchil3101.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 78399..78401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3101.t1.CDS1Gchil3101.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 78399..79223 -
Gchil3101.t1.CDS2Gchil3101.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 79285..79368 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3101.t1.exon1Gchil3101.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 78399..79223 -
Gchil3101.t1.exon2Gchil3101.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 79285..79368 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3101.t1.intron1Gchil3101.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 79224..79284 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3101.t1.start1Gchil3101.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 79366..79368 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3101.t1 ID=Gchil3101.t1|Name=Gchil3101.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=303bp
MCTGTARPVERDHRQRARDFLTQRAVQQTMFCSRVLRDETTVRWLEEWLG
HHGLDDLHHCDALKVPSEQYWTSLLEAPAENYEIKKPIPGRTTRKNPYIK
RRYFTYEVEIVPRMLARRILAARRQISDELQIDIPCIRKENNRSMELYRY
SIVNPTKVDEYLSLPSNGDTRGSPYRQANFDLVKNYTLLLGLVDTVNELS
RNIRTEEDADWLRSFLNTHKAELIAPYASTFGRADHIIEQLLRMTPLIRR
GKALFDPGLLADIILEKRALCADEWLHVMNEASVEHLELERRILEHSIRS
SP*
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spliced messenger RNA

>Gchil3101.t1 ID=Gchil3101.t1|Name=Gchil3101.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00004382_pilon:78399..79368- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTACCGGCACGGCACGGCCTGTGGAGCGTGATCATCGTCAACGTGC
CCGTGATTTTCTAACGCAAAGAGCTGTGCAGCAGACAATGTTCTGTTCAC
GTGTTCTTCGCGACGAGACTACAGTGCGATGGTTAGAGGAATGGCTTGGT
CATCACGGGCTCGATGACTTACATCACTGTGATGCTTTAAAAGTTCCAAG
TGAACAATATTGGACATCGCTTTTGGAGGCACCGGCGGAGAATTACGAAA
TCAAGAAGCCTATTCCTGGTCGTACGACGCGTAAGAACCCATACATCAAG
AGAAGATATTTCACATATGAAGTCGAAATCGTACCGCGAATGCTAGCCCG
CCGAATCTTAGCAGCTCGGAGGCAAATTTCTGACGAATTGCAGATTGATA
TCCCGTGCATCCGAAAGGAGAATAACCGCAGCATGGAATTATATCGATAT
TCTATCGTTAATCCCACAAAGGTAGATGAATATCTTAGCTTACCGTCAAA
TGGTGACACAAGAGGAAGTCCATACAGACAAGCAAACTTCGATTTGGTCA
AGAACTACACTCTGCTGCTTGGCTTGGTGGACACGGTAAATGAGCTGTCG
CGCAACATCAGAACCGAAGAAGATGCCGATTGGCTCCGCTCTTTCTTGAA
CACGCACAAGGCCGAACTAATTGCACCGTACGCCAGCACGTTTGGCAGAG
CGGACCATATTATTGAACAACTTCTTCGAATGACGCCGTTGATACGCCGT
GGAAAGGCCTTGTTCGATCCTGGTTTGCTCGCGGACATAATTCTTGAAAA
GAGAGCACTCTGCGCTGATGAATGGTTGCATGTTATGAACGAAGCTTCAG
TGGAACACTTGGAACTTGAGCGAAGAATTCTCGAACACAGCATTCGCTCC
TCACCATAG
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protein sequence of Gchil3101.t1

>Gchil3101.t1 ID=Gchil3101.t1|Name=Gchil3101.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=303bp
MCTGTARPVERDHRQRARDFLTQRAVQQTMFCSRVLRDETTVRWLEEWLG
HHGLDDLHHCDALKVPSEQYWTSLLEAPAENYEIKKPIPGRTTRKNPYIK
RRYFTYEVEIVPRMLARRILAARRQISDELQIDIPCIRKENNRSMELYRY
SIVNPTKVDEYLSLPSNGDTRGSPYRQANFDLVKNYTLLLGLVDTVNELS
RNIRTEEDADWLRSFLNTHKAELIAPYASTFGRADHIIEQLLRMTPLIRR
GKALFDPGLLADIILEKRALCADEWLHVMNEASVEHLELERRILEHSIRS
SP*
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mRNA from alignment at tig00004382_pilon:78399..79368-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3101.t1 ID=Gchil3101.t1|Name=Gchil3101.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=970bp|location=Sequence derived from alignment at tig00004382_pilon:78399..79368- (Gracilaria chilensis NLEC103_M9 male)
ATGTGTACCGGCACGGCACGGCCTGTGGAGCGTGATCATCGTCAACGTGC
CCGTGATTTTCTAACGCAAAGAGCTGTGCAGCAGGTACGTGTTTCGTGCG
TTCACCGCCTCGAACATGTTGAAAGCATTTACTGATGCCCAGCAGACAAT
GTTCTGTTCACGTGTTCTTCGCGACGAGACTACAGTGCGATGGTTAGAGG
AATGGCTTGGTCATCACGGGCTCGATGACTTACATCACTGTGATGCTTTA
AAAGTTCCAAGTGAACAATATTGGACATCGCTTTTGGAGGCACCGGCGGA
GAATTACGAAATCAAGAAGCCTATTCCTGGTCGTACGACGCGTAAGAACC
CATACATCAAGAGAAGATATTTCACATATGAAGTCGAAATCGTACCGCGA
ATGCTAGCCCGCCGAATCTTAGCAGCTCGGAGGCAAATTTCTGACGAATT
GCAGATTGATATCCCGTGCATCCGAAAGGAGAATAACCGCAGCATGGAAT
TATATCGATATTCTATCGTTAATCCCACAAAGGTAGATGAATATCTTAGC
TTACCGTCAAATGGTGACACAAGAGGAAGTCCATACAGACAAGCAAACTT
CGATTTGGTCAAGAACTACACTCTGCTGCTTGGCTTGGTGGACACGGTAA
ATGAGCTGTCGCGCAACATCAGAACCGAAGAAGATGCCGATTGGCTCCGC
TCTTTCTTGAACACGCACAAGGCCGAACTAATTGCACCGTACGCCAGCAC
GTTTGGCAGAGCGGACCATATTATTGAACAACTTCTTCGAATGACGCCGT
TGATACGCCGTGGAAAGGCCTTGTTCGATCCTGGTTTGCTCGCGGACATA
ATTCTTGAAAAGAGAGCACTCTGCGCTGATGAATGGTTGCATGTTATGAA
CGAAGCTTCAGTGGAACACTTGGAACTTGAGCGAAGAATTCTCGAACACA
GCATTCGCTCCTCACCATAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:78399..79368-

>Gchil3101.t1 ID=Gchil3101.t1|Name=Gchil3101.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00004382_pilon:78399..79368- (Gracilaria chilensis NLEC103_M9 male)
ATGTGTACCGGCACGGCACGGCCTGTGGAGCGTGATCATCGTCAACGTGC
CCGTGATTTTCTAACGCAAAGAGCTGTGCAGCAGACAATGTTCTGTTCAC
GTGTTCTTCGCGACGAGACTACAGTGCGATGGTTAGAGGAATGGCTTGGT
CATCACGGGCTCGATGACTTACATCACTGTGATGCTTTAAAAGTTCCAAG
TGAACAATATTGGACATCGCTTTTGGAGGCACCGGCGGAGAATTACGAAA
TCAAGAAGCCTATTCCTGGTCGTACGACGCGTAAGAACCCATACATCAAG
AGAAGATATTTCACATATGAAGTCGAAATCGTACCGCGAATGCTAGCCCG
CCGAATCTTAGCAGCTCGGAGGCAAATTTCTGACGAATTGCAGATTGATA
TCCCGTGCATCCGAAAGGAGAATAACCGCAGCATGGAATTATATCGATAT
TCTATCGTTAATCCCACAAAGGTAGATGAATATCTTAGCTTACCGTCAAA
TGGTGACACAAGAGGAAGTCCATACAGACAAGCAAACTTCGATTTGGTCA
AGAACTACACTCTGCTGCTTGGCTTGGTGGACACGGTAAATGAGCTGTCG
CGCAACATCAGAACCGAAGAAGATGCCGATTGGCTCCGCTCTTTCTTGAA
CACGCACAAGGCCGAACTAATTGCACCGTACGCCAGCACGTTTGGCAGAG
CGGACCATATTATTGAACAACTTCTTCGAATGACGCCGTTGATACGCCGT
GGAAAGGCCTTGTTCGATCCTGGTTTGCTCGCGGACATAATTCTTGAAAA
GAGAGCACTCTGCGCTGATGAATGGTTGCATGTTATGAACGAAGCTTCAG
TGGAACACTTGGAACTTGAGCGAAGAATTCTCGAACACAGCATTCGCTCC
TCACCATAG
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