Gchil3145.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3145.t1
Unique NameGchil3145.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length348
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:445084..446214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15711002
PFAMsRVT_1,SCAN,rve,zf-CCHC,zf-H2C2
Max annot lvl33208|Metazoa
Evalue5.72e-52
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa
DescriptionK02A2.6-like
COG categoryOU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3145Gchil3145Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 445084..446214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3145.t1Gchil3145.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 445084..446214 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3145.t1.start1Gchil3145.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 445084..445086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3145.t1.CDS1Gchil3145.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 445084..445416 +
Gchil3145.t1.CDS2Gchil3145.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 445504..446214 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3145.t1.exon1Gchil3145.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 445084..445416 +
Gchil3145.t1.exon2Gchil3145.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 445504..446214 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3145.t1.intron1Gchil3145.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 445417..445503 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3145.t1.stop1Gchil3145.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 446212..446214 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3145.t1 ID=Gchil3145.t1|Name=Gchil3145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=348bp
MTQIAVSVHYKSSSLVRIQNHPKTVLKHLTLMANGVMDIQPKSSFLATIS
NFRDKPVRLPNVTVIGITLPEPVAIMEAQVDILATQTPEEDVESWEGTIA
IGADFESYGPQDDARPQFQHPYRTGLKGREIVADQMEKMCKDQVIEPGPP
NRSEWASTLVLVAKKDGSVRICVDYRKLNALSKRDSYPIPVMDECLDSLG
KAVVFNTLEANSGYLKIPLAEDARALTTFTTHEGLFRFTRMPFGLKNAPA
TFQRVMDIILSRVKWKPALVYLDDFIIFSRTVKEHFRHVKKVLTILQDAG
VTQKLRKCAFFQASVDYLGHVVLPGKLKVATRTTNAIRQAKPPRTHT*
back to top

spliced messenger RNA

>Gchil3145.t1 ID=Gchil3145.t1|Name=Gchil3145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00004382_pilon:445084..446214+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgacccaaatcgctgtatcggtccattacaagtcctcaagtctcgttag
gattcagaaccacccgaaaacggttctgaagcaccttaccttgatggcca
atggagtaatggacatccaacccaagagctcctttttggccacaatcagc
aacttccgagataaacctgtgcggctacctaacgttacagtgattggtat
cactctacccgaacccgtggccattatggaggcccaagttgatatccttg
cgacgcaaactcccgaggaggacgtcgaatcttgggaagggacgatcgct
attggcgcagacttcgagtcgtatgggccccaggatgatgctagaccaca
gttccagcacccgtaccgtaccggccttaagggtagggaaattgtcgccg
accagatggaaaagatgtgcaaagatcaagtcatagagccggggcctcca
aaccgatccgaatgggcaagtacccttgtccttgtggcgaagaaagatgg
ctccgtcaggatctgtgtcgactacaggaagcttaacgcactatccaaga
gggactcatacccgatacccgtcatggacgagtgtctggattccttaggc
aaagctgtcgtatttaacacactggaagctaactcgggatatttgaaaat
ccctttggccgaggacgcgagagcgctgacaacctttaccacccatgaag
gtctgttcagatttactcgcatgccctttggtttgaagaatgcaccagcc
acgttccaacgggtaatggacattatactgtccagagtcaaatggaagcc
cgccctggtctatttggatgactttataatcttctcacggaccgtaaagg
aacactttcgccacgtgaagaaggtgctaacaatcctacaggacgctgga
gtaacacagaaactccgcaaatgcgctttcttccaggcctcagtggacta
tctcggtcacgtcgtcctcccaggaaagctaaaggtggccacacggacaa
cgaatgcgattcgccaggctaagcctcctaggacccacacctaa
back to top

protein sequence of Gchil3145.t1

>Gchil3145.t1 ID=Gchil3145.t1|Name=Gchil3145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=348bp
MTQIAVSVHYKSSSLVRIQNHPKTVLKHLTLMANGVMDIQPKSSFLATIS
NFRDKPVRLPNVTVIGITLPEPVAIMEAQVDILATQTPEEDVESWEGTIA
IGADFESYGPQDDARPQFQHPYRTGLKGREIVADQMEKMCKDQVIEPGPP
NRSEWASTLVLVAKKDGSVRICVDYRKLNALSKRDSYPIPVMDECLDSLG
KAVVFNTLEANSGYLKIPLAEDARALTTFTTHEGLFRFTRMPFGLKNAPA
TFQRVMDIILSRVKWKPALVYLDDFIIFSRTVKEHFRHVKKVLTILQDAG
VTQKLRKCAFFQASVDYLGHVVLPGKLKVATRTTNAIRQAKPPRTHT*
back to top

mRNA from alignment at tig00004382_pilon:445084..446214+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3145.t1 ID=Gchil3145.t1|Name=Gchil3145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00004382_pilon:445084..446214+ (Gracilaria chilensis NLEC103_M9 male)
atgacccaaatcgctgtatcggtccattacaagtcctcaagtctcgttag
gattcagaaccacccgaaaacggttctgaagcaccttaccttgatggcca
atggagtaatggacatccaacccaagagctcctttttggccacaatcagc
aacttccgagataaacctgtgcggctacctaacgttacagtgattggtat
cactctacccgaacccgtggccattatggaggcccaagttgatatccttg
cgacgcaaactcccgaggaggacgtcgaatcttgggaagggacgatcgct
attggcgcagacttcgagtcgtatgggccccaggtacttgatctcctcaa
ggaatacagggccatgtggtcagttagattgggcgcaatcagagccacta
cacaccgcaatgacctttaggatgatgctagaccacagttccagcacccg
taccgtaccggccttaagggtagggaaattgtcgccgaccagatggaaaa
gatgtgcaaagatcaagtcatagagccggggcctccaaaccgatccgaat
gggcaagtacccttgtccttgtggcgaagaaagatggctccgtcaggatc
tgtgtcgactacaggaagcttaacgcactatccaagagggactcataccc
gatacccgtcatggacgagtgtctggattccttaggcaaagctgtcgtat
ttaacacactggaagctaactcgggatatttgaaaatccctttggccgag
gacgcgagagcgctgacaacctttaccacccatgaaggtctgttcagatt
tactcgcatgccctttggtttgaagaatgcaccagccacgttccaacggg
taatggacattatactgtccagagtcaaatggaagcccgccctggtctat
ttggatgactttataatcttctcacggaccgtaaaggaacactttcgcca
cgtgaagaaggtgctaacaatcctacaggacgctggagtaacacagaaac
tccgcaaatgcgctttcttccaggcctcagtggactatctcggtcacgtc
gtcctcccaggaaagctaaaggtggccacacggacaacgaatgcgattcg
ccaggctaagcctcctaggacccacacctaa
back to top

Coding sequence (CDS) from alignment at tig00004382_pilon:445084..446214+

>Gchil3145.t1 ID=Gchil3145.t1|Name=Gchil3145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1044bp|location=Sequence derived from alignment at tig00004382_pilon:445084..446214+ (Gracilaria chilensis NLEC103_M9 male)
atgacccaaatcgctgtatcggtccattacaagtcctcaagtctcgttag
gattcagaaccacccgaaaacggttctgaagcaccttaccttgatggcca
atggagtaatggacatccaacccaagagctcctttttggccacaatcagc
aacttccgagataaacctgtgcggctacctaacgttacagtgattggtat
cactctacccgaacccgtggccattatggaggcccaagttgatatccttg
cgacgcaaactcccgaggaggacgtcgaatcttgggaagggacgatcgct
attggcgcagacttcgagtcgtatgggccccaggatgatgctagaccaca
gttccagcacccgtaccgtaccggccttaagggtagggaaattgtcgccg
accagatggaaaagatgtgcaaagatcaagtcatagagccggggcctcca
aaccgatccgaatgggcaagtacccttgtccttgtggcgaagaaagatgg
ctccgtcaggatctgtgtcgactacaggaagcttaacgcactatccaaga
gggactcatacccgatacccgtcatggacgagtgtctggattccttaggc
aaagctgtcgtatttaacacactggaagctaactcgggatatttgaaaat
ccctttggccgaggacgcgagagcgctgacaacctttaccacccatgaag
gtctgttcagatttactcgcatgccctttggtttgaagaatgcaccagcc
acgttccaacgggtaatggacattatactgtccagagtcaaatggaagcc
cgccctggtctatttggatgactttataatcttctcacggaccgtaaagg
aacactttcgccacgtgaagaaggtgctaacaatcctacaggacgctgga
gtaacacagaaactccgcaaatgcgctttcttccaggcctcagtggacta
tctcggtcacgtcgtcctcccaggaaagctaaaggtggccacacggacaa
cgaatgcgattcgccaggctaagcctcctaggacccacacctaa
back to top