Gchil3091.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3091.t1
Unique Name	Gchil3091.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	358

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:43630..44703 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704080.1
PFAMs	Mito_carr
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15111
KEGG TC	2.A.29.18
Evalue	2.78e-105
EggNOG OGs	KOG0768@1\|root,KOG0768@2759\|Eukaryota
Description	S-adenosyl-L-methionine transmembrane transport
COG category	U
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3091	Gchil3091	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 43630..44703 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3091.t1.start1	Gchil3091.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 43630..43632 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3091.t1.CDS1	Gchil3091.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 43630..44703 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3091.t1.exon1	Gchil3091.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 43630..44703 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3091.t1.stop1	Gchil3091.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 44701..44703 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3091.t1	Gchil3091.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 43630..44703 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:43630..44703+
coding sequence from alignment at tig00004382_pilon:43630..44703+

mRNA sequence

>Gchil3091.t1 ID=Gchil3091.t1|Name=Gchil3091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=358bp
MGRDGFDDWRMKVAAATAAVQLTFQEKMLAGAIARGVAQTILHPVDVMRT
RLQARNINTPWRPSVFVKGVIPQIVLAIPAGALQFLAFESAKEKLQTLIP
DENLSQTRILLAGAAGALVAATCRIPQEVLKQPLQAEIYPNVFVALRETV
GKSGIGALYKGSVATISRDIPWNALSFMFHGQGKKLFKSWKGREPANDEN
LAVAGVAGALAAILLTPIDVVKTRIMTQRVGSTAYSGVIGTLQKIVREEG
AATLMKGVIPRIVFLAPLAGITFSVYEAVAANIKKRKSIIEPIAFNSLQD
AFITHLQPGVNEKPRSLTLALRFSKSSVRLASANTHSCGSSLGDYDSPSP
FVFSLSA*

spliced messenger RNA

>Gchil3091.t1 ID=Gchil3091.t1|Name=Gchil3091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00004382_pilon:43630..44703+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCGCGATGGATTCGATGATTGGCGCATGAAAGTCGCGGCTGCGAC
TGCTGCCGTGCAGCTCACGTTTCAGGAAAAGATGCTTGCTGGAGCCATTG
CGAGGGGCGTGGCGCAGACCATTCTGCATCCGGTTGATGTGATGCGTACC
CGCCTGCAGGCGCGAAATATAAACACTCCCTGGAGGCCTTCTGTCTTTGT
CAAGGGTGTAATTCCACAAATCGTCCTCGCCATCCCAGCTGGCGCGCTCC
AATTCTTGGCGTTTGAAAGCGCAAAGGAAAAGTTACAAACTTTAATACCG
GACGAGAATCTTTCGCAAACGCGTATCTTGCTCGCAGGTGCCGCTGGTGC
TCTGGTTGCCGCCACGTGCCGTATTCCGCAAGAGGTCTTGAAACAACCGC
TTCAGGCCGAGATTTACCCTAATGTATTTGTCGCCCTAAGAGAAACTGTC
GGCAAGTCGGGAATCGGTGCACTTTACAAGGGCTCTGTTGCCACCATCTC
CAGGGATATCCCATGGAACGCGCTATCTTTCATGTTCCACGGCCAGGGCA
AAAAGCTTTTCAAGTCTTGGAAGGGACGTGAACCAGCAAATGATGAAAAC
CTCGCCGTTGCCGGCGTCGCTGGTGCCCTCGCGGCCATCTTACTTACACC
CATTGACGTCGTGAAGACGCGCATCATGACGCAAAGAGTTGGATCCACTG
CTTACTCAGGAGTCATTGGCACTTTGCAAAAAATTGTTAGGGAAGAGGGA
GCCGCTACTTTGATGAAGGGTGTCATTCCTAGAATTGTCTTCCTTGCTCC
TCTAGCCGGAATTACTTTCTCTGTATACGAGGCTGTCGCTGCCAACATTA
AGAAGAGGAAGAGTATTATTGAACCTATTGCATTCAATTCTTTGCAGGAT
GCGTTCATCACACACTTGCAACCTGGTGTGAATGAAAAACCCCGTTCATT
AACCTTGGCATTACGGTTTTCAAAATCGAGTGTTAGATTGGCGTCAGCCA
ACACTCATTCGTGTGGAAGCAGTCTTGGTGATTACGATTCCCCATCCCCG
TTTGTCTTTTCTTTATCTGCATAG

protein sequence of Gchil3091.t1

>Gchil3091.t1 ID=Gchil3091.t1|Name=Gchil3091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=358bp
MGRDGFDDWRMKVAAATAAVQLTFQEKMLAGAIARGVAQTILHPVDVMRT
RLQARNINTPWRPSVFVKGVIPQIVLAIPAGALQFLAFESAKEKLQTLIP
DENLSQTRILLAGAAGALVAATCRIPQEVLKQPLQAEIYPNVFVALRETV
GKSGIGALYKGSVATISRDIPWNALSFMFHGQGKKLFKSWKGREPANDEN
LAVAGVAGALAAILLTPIDVVKTRIMTQRVGSTAYSGVIGTLQKIVREEG
AATLMKGVIPRIVFLAPLAGITFSVYEAVAANIKKRKSIIEPIAFNSLQD
AFITHLQPGVNEKPRSLTLALRFSKSSVRLASANTHSCGSSLGDYDSPSP
FVFSLSA*

mRNA from alignment at tig00004382_pilon:43630..44703+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3091.t1 ID=Gchil3091.t1|Name=Gchil3091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00004382_pilon:43630..44703+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGCGCGATGGATTCGATGATTGGCGCATGAAAGTCGCGGCTGCGAC
TGCTGCCGTGCAGCTCACGTTTCAGGAAAAGATGCTTGCTGGAGCCATTG
CGAGGGGCGTGGCGCAGACCATTCTGCATCCGGTTGATGTGATGCGTACC
CGCCTGCAGGCGCGAAATATAAACACTCCCTGGAGGCCTTCTGTCTTTGT
CAAGGGTGTAATTCCACAAATCGTCCTCGCCATCCCAGCTGGCGCGCTCC
AATTCTTGGCGTTTGAAAGCGCAAAGGAAAAGTTACAAACTTTAATACCG
GACGAGAATCTTTCGCAAACGCGTATCTTGCTCGCAGGTGCCGCTGGTGC
TCTGGTTGCCGCCACGTGCCGTATTCCGCAAGAGGTCTTGAAACAACCGC
TTCAGGCCGAGATTTACCCTAATGTATTTGTCGCCCTAAGAGAAACTGTC
GGCAAGTCGGGAATCGGTGCACTTTACAAGGGCTCTGTTGCCACCATCTC
CAGGGATATCCCATGGAACGCGCTATCTTTCATGTTCCACGGCCAGGGCA
AAAAGCTTTTCAAGTCTTGGAAGGGACGTGAACCAGCAAATGATGAAAAC
CTCGCCGTTGCCGGCGTCGCTGGTGCCCTCGCGGCCATCTTACTTACACC
CATTGACGTCGTGAAGACGCGCATCATGACGCAAAGAGTTGGATCCACTG
CTTACTCAGGAGTCATTGGCACTTTGCAAAAAATTGTTAGGGAAGAGGGA
GCCGCTACTTTGATGAAGGGTGTCATTCCTAGAATTGTCTTCCTTGCTCC
TCTAGCCGGAATTACTTTCTCTGTATACGAGGCTGTCGCTGCCAACATTA
AGAAGAGGAAGAGTATTATTGAACCTATTGCATTCAATTCTTTGCAGGAT
GCGTTCATCACACACTTGCAACCTGGTGTGAATGAAAAACCCCGTTCATT
AACCTTGGCATTACGGTTTTCAAAATCGAGTGTTAGATTGGCGTCAGCCA
ACACTCATTCGTGTGGAAGCAGTCTTGGTGATTACGATTCCCCATCCCCG
TTTGTCTTTTCTTTATCTGCATAG

Coding sequence (CDS) from alignment at tig00004382_pilon:43630..44703+

>Gchil3091.t1 ID=Gchil3091.t1|Name=Gchil3091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00004382_pilon:43630..44703+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGCGCGATGGATTCGATGATTGGCGCATGAAAGTCGCGGCTGCGAC
TGCTGCCGTGCAGCTCACGTTTCAGGAAAAGATGCTTGCTGGAGCCATTG
CGAGGGGCGTGGCGCAGACCATTCTGCATCCGGTTGATGTGATGCGTACC
CGCCTGCAGGCGCGAAATATAAACACTCCCTGGAGGCCTTCTGTCTTTGT
CAAGGGTGTAATTCCACAAATCGTCCTCGCCATCCCAGCTGGCGCGCTCC
AATTCTTGGCGTTTGAAAGCGCAAAGGAAAAGTTACAAACTTTAATACCG
GACGAGAATCTTTCGCAAACGCGTATCTTGCTCGCAGGTGCCGCTGGTGC
TCTGGTTGCCGCCACGTGCCGTATTCCGCAAGAGGTCTTGAAACAACCGC
TTCAGGCCGAGATTTACCCTAATGTATTTGTCGCCCTAAGAGAAACTGTC
GGCAAGTCGGGAATCGGTGCACTTTACAAGGGCTCTGTTGCCACCATCTC
CAGGGATATCCCATGGAACGCGCTATCTTTCATGTTCCACGGCCAGGGCA
AAAAGCTTTTCAAGTCTTGGAAGGGACGTGAACCAGCAAATGATGAAAAC
CTCGCCGTTGCCGGCGTCGCTGGTGCCCTCGCGGCCATCTTACTTACACC
CATTGACGTCGTGAAGACGCGCATCATGACGCAAAGAGTTGGATCCACTG
CTTACTCAGGAGTCATTGGCACTTTGCAAAAAATTGTTAGGGAAGAGGGA
GCCGCTACTTTGATGAAGGGTGTCATTCCTAGAATTGTCTTCCTTGCTCC
TCTAGCCGGAATTACTTTCTCTGTATACGAGGCTGTCGCTGCCAACATTA
AGAAGAGGAAGAGTATTATTGAACCTATTGCATTCAATTCTTTGCAGGAT
GCGTTCATCACACACTTGCAACCTGGTGTGAATGAAAAACCCCGTTCATT
AACCTTGGCATTACGGTTTTCAAAATCGAGTGTTAGATTGGCGTCAGCCA
ACACTCATTCGTGTGGAAGCAGTCTTGGTGATTACGATTCCCCATCCCCG
TTTGTCTTTTCTTTATCTGCATAG