Gchil3128.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3128.t1
Unique NameGchil3128.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length532
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:314690..316285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67267.JNXT01000017_gene7221
Max annot lvl201174|Actinobacteria
Evalue6.2e-141
EggNOG OGsCOG0535@1|root,COG0535@2|Bacteria,2HP1A@201174|Actinobacteria
Descriptionradical SAM domain protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3128Gchil3128Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 314690..316285 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3128.t1.start1Gchil3128.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 314690..314692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3128.t1.CDS1Gchil3128.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 314690..316285 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3128.t1.exon1Gchil3128.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 314690..316285 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3128.t1.stop1Gchil3128.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 316283..316285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3128.t1Gchil3128.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 314690..316285 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3128.t1 ID=Gchil3128.t1|Name=Gchil3128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=532bp
MAPPVAFIASSPLQLTVSAPVPRQPRMTAAPKPSTNAADRHPLRALLHRV
QSALAAVEALTRPAMPSSAARYEALPAHVKTPSQMLGRLSPGCEGTKGVF
PRCNFACKPCYHSSTANSVRVDGAHTLVQVARQMQLLQRQRGPSAHCQLI
GGEVSLLTPEDHAMALETMRFFGRIPMSFTHGDFDYDYLQRLALNQRGRP
RFDRLDFAVHFDMGMRGRRGASHVRNEMDLMPFRRRFIHMFERLRRKHGV
RYYIAHNMTVQPDNLPFVAEAVREMKSMGFRLLSFQPAALQGAERRRVAN
LRNIADDHGQIVWEQIEKGMGTRLPYSLFQMGDERCNRMCVCGRVGSRSN
RNSEHFFLFFDDQCQADVRVRDLIMSEVGNIVLKPPMLTLKLIRVMLRKP
WLLFLAIAWVMRLVNRAGGLWAILRHGVQPLTIVMHRFMDAEDVKIAWKF
MQDGVDSGDPRVDETGPRIRETMDRLAACSYGMAQPERDRVVPACVQHSV
YDPQENAQLAQDLPIRQPAKSASEVNLDVTR*
back to top

spliced messenger RNA

>Gchil3128.t1 ID=Gchil3128.t1|Name=Gchil3128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00004382_pilon:314690..316285+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCTCCCGTTGCATTCATCGCCTCGTCCCCGCTACAACTCACCGT
CAGTGCGCCGGTCCCACGCCAGCCGCGCATGACCGCAGCGCCGAAGCCGT
CGACCAACGCCGCCGATCGGCACCCGCTGCGCGCCTTGCTGCATCGCGTC
CAATCCGCGCTAGCCGCCGTCGAGGCGCTCACGCGACCCGCCATGCCGTC
CAGTGCTGCGCGCTACGAAGCGCTTCCTGCGCATGTCAAAACGCCCTCGC
AAATGCTCGGCCGTCTGTCCCCTGGCTGCGAGGGCACTAAGGGGGTCTTT
CCGCGCTGCAACTTTGCGTGCAAGCCGTGTTACCACTCCTCCACCGCCAA
TTCCGTGCGCGTGGACGGCGCGCATACGCTCGTGCAAGTGGCGCGACAGA
TGCAACTTTTGCAGCGTCAGCGCGGGCCCTCTGCGCATTGTCAACTCATT
GGCGGTGAGGTTTCGTTGCTTACGCCGGAGGACCATGCTATGGCTTTGGA
GACCATGCGCTTTTTCGGACGCATTCCGATGAGCTTTACGCACGGCGACT
TTGATTATGATTATTTGCAGCGTCTGGCATTGAATCAAAGAGGCCGACCG
CGCTTTGATCGCCTCGACTTTGCTGTGCACTTTGATATGGGAATGCGCGG
ACGTCGCGGCGCTTCTCACGTGCGCAACGAAATGGATCTTATGCCCTTTC
GTCGTCGCTTTATCCACATGTTTGAACGGTTACGACGTAAACATGGCGTT
CGTTACTACATCGCACACAACATGACCGTGCAGCCTGATAATCTGCCGTT
TGTTGCTGAAGCAGTGCGCGAGATGAAATCAATGGGTTTCCGATTGCTAT
CGTTTCAACCAGCTGCTCTGCAAGGGGCTGAACGGCGTCGCGTCGCCAAT
TTGCGCAACATTGCCGACGACCATGGGCAGATTGTATGGGAGCAAATAGA
AAAGGGCATGGGTACACGCCTTCCGTATTCTCTCTTCCAGATGGGTGATG
AGCGTTGCAATCGGATGTGTGTTTGCGGACGTGTCGGGTCTCGGTCCAAT
AGAAACAGCGAGCACTTCTTTCTTTTCTTTGATGATCAATGTCAGGCAGA
CGTGCGAGTTCGAGATCTCATCATGTCAGAGGTGGGCAATATTGTGCTAA
AGCCGCCGATGCTAACATTGAAGCTCATACGCGTGATGCTTCGCAAACCA
TGGCTTCTATTCCTGGCGATAGCGTGGGTGATGCGGTTGGTGAACCGCGC
CGGAGGACTTTGGGCGATCCTTCGACACGGCGTGCAACCGCTCACCATTG
TGATGCATCGCTTCATGGATGCCGAGGACGTGAAAATCGCTTGGAAATTC
ATGCAGGACGGCGTGGATTCGGGCGATCCAAGAGTCGATGAGACTGGGCC
ACGCATTCGGGAGACCATGGATCGCTTGGCTGCGTGTTCGTATGGCATGG
CCCAGCCCGAACGAGATAGAGTGGTGCCTGCGTGCGTCCAGCACAGCGTG
TATGACCCTCAAGAAAACGCCCAACTCGCTCAGGATTTGCCGATCCGGCA
GCCCGCCAAGTCTGCTTCTGAGGTCAACCTGGACGTTACGAGGTAG
back to top

protein sequence of Gchil3128.t1

>Gchil3128.t1 ID=Gchil3128.t1|Name=Gchil3128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=532bp
MAPPVAFIASSPLQLTVSAPVPRQPRMTAAPKPSTNAADRHPLRALLHRV
QSALAAVEALTRPAMPSSAARYEALPAHVKTPSQMLGRLSPGCEGTKGVF
PRCNFACKPCYHSSTANSVRVDGAHTLVQVARQMQLLQRQRGPSAHCQLI
GGEVSLLTPEDHAMALETMRFFGRIPMSFTHGDFDYDYLQRLALNQRGRP
RFDRLDFAVHFDMGMRGRRGASHVRNEMDLMPFRRRFIHMFERLRRKHGV
RYYIAHNMTVQPDNLPFVAEAVREMKSMGFRLLSFQPAALQGAERRRVAN
LRNIADDHGQIVWEQIEKGMGTRLPYSLFQMGDERCNRMCVCGRVGSRSN
RNSEHFFLFFDDQCQADVRVRDLIMSEVGNIVLKPPMLTLKLIRVMLRKP
WLLFLAIAWVMRLVNRAGGLWAILRHGVQPLTIVMHRFMDAEDVKIAWKF
MQDGVDSGDPRVDETGPRIRETMDRLAACSYGMAQPERDRVVPACVQHSV
YDPQENAQLAQDLPIRQPAKSASEVNLDVTR*
back to top

mRNA from alignment at tig00004382_pilon:314690..316285+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3128.t1 ID=Gchil3128.t1|Name=Gchil3128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00004382_pilon:314690..316285+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCTCCCGTTGCATTCATCGCCTCGTCCCCGCTACAACTCACCGT
CAGTGCGCCGGTCCCACGCCAGCCGCGCATGACCGCAGCGCCGAAGCCGT
CGACCAACGCCGCCGATCGGCACCCGCTGCGCGCCTTGCTGCATCGCGTC
CAATCCGCGCTAGCCGCCGTCGAGGCGCTCACGCGACCCGCCATGCCGTC
CAGTGCTGCGCGCTACGAAGCGCTTCCTGCGCATGTCAAAACGCCCTCGC
AAATGCTCGGCCGTCTGTCCCCTGGCTGCGAGGGCACTAAGGGGGTCTTT
CCGCGCTGCAACTTTGCGTGCAAGCCGTGTTACCACTCCTCCACCGCCAA
TTCCGTGCGCGTGGACGGCGCGCATACGCTCGTGCAAGTGGCGCGACAGA
TGCAACTTTTGCAGCGTCAGCGCGGGCCCTCTGCGCATTGTCAACTCATT
GGCGGTGAGGTTTCGTTGCTTACGCCGGAGGACCATGCTATGGCTTTGGA
GACCATGCGCTTTTTCGGACGCATTCCGATGAGCTTTACGCACGGCGACT
TTGATTATGATTATTTGCAGCGTCTGGCATTGAATCAAAGAGGCCGACCG
CGCTTTGATCGCCTCGACTTTGCTGTGCACTTTGATATGGGAATGCGCGG
ACGTCGCGGCGCTTCTCACGTGCGCAACGAAATGGATCTTATGCCCTTTC
GTCGTCGCTTTATCCACATGTTTGAACGGTTACGACGTAAACATGGCGTT
CGTTACTACATCGCACACAACATGACCGTGCAGCCTGATAATCTGCCGTT
TGTTGCTGAAGCAGTGCGCGAGATGAAATCAATGGGTTTCCGATTGCTAT
CGTTTCAACCAGCTGCTCTGCAAGGGGCTGAACGGCGTCGCGTCGCCAAT
TTGCGCAACATTGCCGACGACCATGGGCAGATTGTATGGGAGCAAATAGA
AAAGGGCATGGGTACACGCCTTCCGTATTCTCTCTTCCAGATGGGTGATG
AGCGTTGCAATCGGATGTGTGTTTGCGGACGTGTCGGGTCTCGGTCCAAT
AGAAACAGCGAGCACTTCTTTCTTTTCTTTGATGATCAATGTCAGGCAGA
CGTGCGAGTTCGAGATCTCATCATGTCAGAGGTGGGCAATATTGTGCTAA
AGCCGCCGATGCTAACATTGAAGCTCATACGCGTGATGCTTCGCAAACCA
TGGCTTCTATTCCTGGCGATAGCGTGGGTGATGCGGTTGGTGAACCGCGC
CGGAGGACTTTGGGCGATCCTTCGACACGGCGTGCAACCGCTCACCATTG
TGATGCATCGCTTCATGGATGCCGAGGACGTGAAAATCGCTTGGAAATTC
ATGCAGGACGGCGTGGATTCGGGCGATCCAAGAGTCGATGAGACTGGGCC
ACGCATTCGGGAGACCATGGATCGCTTGGCTGCGTGTTCGTATGGCATGG
CCCAGCCCGAACGAGATAGAGTGGTGCCTGCGTGCGTCCAGCACAGCGTG
TATGACCCTCAAGAAAACGCCCAACTCGCTCAGGATTTGCCGATCCGGCA
GCCCGCCAAGTCTGCTTCTGAGGTCAACCTGGACGTTACGAGGTAG
back to top

Coding sequence (CDS) from alignment at tig00004382_pilon:314690..316285+

>Gchil3128.t1 ID=Gchil3128.t1|Name=Gchil3128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1596bp|location=Sequence derived from alignment at tig00004382_pilon:314690..316285+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCTCCCGTTGCATTCATCGCCTCGTCCCCGCTACAACTCACCGT
CAGTGCGCCGGTCCCACGCCAGCCGCGCATGACCGCAGCGCCGAAGCCGT
CGACCAACGCCGCCGATCGGCACCCGCTGCGCGCCTTGCTGCATCGCGTC
CAATCCGCGCTAGCCGCCGTCGAGGCGCTCACGCGACCCGCCATGCCGTC
CAGTGCTGCGCGCTACGAAGCGCTTCCTGCGCATGTCAAAACGCCCTCGC
AAATGCTCGGCCGTCTGTCCCCTGGCTGCGAGGGCACTAAGGGGGTCTTT
CCGCGCTGCAACTTTGCGTGCAAGCCGTGTTACCACTCCTCCACCGCCAA
TTCCGTGCGCGTGGACGGCGCGCATACGCTCGTGCAAGTGGCGCGACAGA
TGCAACTTTTGCAGCGTCAGCGCGGGCCCTCTGCGCATTGTCAACTCATT
GGCGGTGAGGTTTCGTTGCTTACGCCGGAGGACCATGCTATGGCTTTGGA
GACCATGCGCTTTTTCGGACGCATTCCGATGAGCTTTACGCACGGCGACT
TTGATTATGATTATTTGCAGCGTCTGGCATTGAATCAAAGAGGCCGACCG
CGCTTTGATCGCCTCGACTTTGCTGTGCACTTTGATATGGGAATGCGCGG
ACGTCGCGGCGCTTCTCACGTGCGCAACGAAATGGATCTTATGCCCTTTC
GTCGTCGCTTTATCCACATGTTTGAACGGTTACGACGTAAACATGGCGTT
CGTTACTACATCGCACACAACATGACCGTGCAGCCTGATAATCTGCCGTT
TGTTGCTGAAGCAGTGCGCGAGATGAAATCAATGGGTTTCCGATTGCTAT
CGTTTCAACCAGCTGCTCTGCAAGGGGCTGAACGGCGTCGCGTCGCCAAT
TTGCGCAACATTGCCGACGACCATGGGCAGATTGTATGGGAGCAAATAGA
AAAGGGCATGGGTACACGCCTTCCGTATTCTCTCTTCCAGATGGGTGATG
AGCGTTGCAATCGGATGTGTGTTTGCGGACGTGTCGGGTCTCGGTCCAAT
AGAAACAGCGAGCACTTCTTTCTTTTCTTTGATGATCAATGTCAGGCAGA
CGTGCGAGTTCGAGATCTCATCATGTCAGAGGTGGGCAATATTGTGCTAA
AGCCGCCGATGCTAACATTGAAGCTCATACGCGTGATGCTTCGCAAACCA
TGGCTTCTATTCCTGGCGATAGCGTGGGTGATGCGGTTGGTGAACCGCGC
CGGAGGACTTTGGGCGATCCTTCGACACGGCGTGCAACCGCTCACCATTG
TGATGCATCGCTTCATGGATGCCGAGGACGTGAAAATCGCTTGGAAATTC
ATGCAGGACGGCGTGGATTCGGGCGATCCAAGAGTCGATGAGACTGGGCC
ACGCATTCGGGAGACCATGGATCGCTTGGCTGCGTGTTCGTATGGCATGG
CCCAGCCCGAACGAGATAGAGTGGTGCCTGCGTGCGTCCAGCACAGCGTG
TATGACCCTCAAGAAAACGCCCAACTCGCTCAGGATTTGCCGATCCGGCA
GCCCGCCAAGTCTGCTTCTGAGGTCAACCTGGACGTTACGAGGTAG
back to top