Gchil3208.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3208.t1
Unique NameGchil3208.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length537
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:925275..926885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_006823572.1
PFAMsNucleotid_trans
Max annot lvl33208|Metazoa
KEGG koko:K11714
Evalue3.61e-26
EggNOG OGs2CZA0@1|root,2S9AH@2759|Eukaryota,3ABW2@33154|Opisthokonta,3BVK1@33208|Metazoa,3DCNX@33213|Bilateria
DescriptionNucleotide-diphospho-sugar transferase
COG categoryS
CAZyGT77
BRITEko00000,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3208Gchil3208Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 925275..926885 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3208.t1.stop1Gchil3208.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 925275..925277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3208.t1.CDS1Gchil3208.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 925275..926885 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3208.t1.exon1Gchil3208.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 925275..926885 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3208.t1.start1Gchil3208.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 926883..926885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3208.t1Gchil3208.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 925275..926885 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3208.t1 ID=Gchil3208.t1|Name=Gchil3208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=537bp
MHVRNASSGGLFDWVMSAWTPSRDGNDVVLIVDASTQTSLPVTYSTYLRS
VMERHSEAQVAAYALAPVVVKRNGIIESYARVSDKAQVFFYQNTPLLPAL
AIRANVWRSFQTWFYAHRSEWFLWPIIVSPRDKKDAAWDQYHGTSRAHWT
LWFSRFCAEFELFNVYPAQKSLQPLSSHIAQESKSIEAFNFDGSPATTKS
SMATQNVAKIIQLGKRMGGSVSMTLVNDAFLETARSWICNVDVAHIRPPG
VVWITVDDTSYDFLKEVNNSYAIRMNEFRGGQEREGTSYGTPGYWLLMLE
RTKLIQAILDNGIGVFAFETDQIWLRDPIPYVNRLVHSGDEVDIVGTIDT
RHEIGGNFLYLSPTLAMRRTWREVCRRFEKSYRTSRLHGHTAKYKRYMEN
DQSILTKLVFFDKEFKNMNPTIFRALDTDLFVDGRWYDKKKKYYVSSKSK
SPILINNNFLVGIANKKQRAIENGHWFLTENKCNVETVKRAIILNEERAG
RATSVSDVLASKIEGADTEAGLDAALAAIAKEHGKH*
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spliced messenger RNA

>Gchil3208.t1 ID=Gchil3208.t1|Name=Gchil3208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00004382_pilon:925275..926885- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTGCGCAATGCGTCGTCAGGTGGATTATTCGACTGGGTCATGAG
CGCATGGACTCCTTCACGCGATGGCAACGATGTAGTGCTTATTGTCGACG
CTTCTACACAAACATCTCTACCAGTCACGTACTCTACATATCTCAGATCA
GTAATGGAACGTCATTCGGAGGCTCAAGTAGCTGCTTATGCGCTCGCACC
TGTCGTGGTTAAACGAAACGGTATCATTGAGTCTTATGCTCGCGTGTCCG
ATAAGGCTCAGGTCTTCTTTTATCAAAACACCCCGCTACTTCCTGCTCTT
GCAATACGTGCAAACGTCTGGCGGTCTTTCCAAACATGGTTTTATGCACA
TCGTTCGGAATGGTTTCTTTGGCCCATCATCGTTTCGCCTCGTGATAAAA
AGGATGCGGCGTGGGATCAGTACCACGGCACTTCTCGAGCACATTGGACT
CTCTGGTTTTCAAGGTTCTGTGCTGAGTTCGAGTTGTTTAATGTATATCC
GGCGCAAAAATCACTGCAGCCGTTATCTTCGCATATTGCGCAAGAATCAA
AGAGCATAGAAGCATTTAATTTTGATGGGAGTCCGGCCACTACGAAGTCC
AGTATGGCTACTCAGAATGTTGCCAAAATCATTCAACTTGGGAAACGGAT
GGGAGGGTCAGTGTCAATGACTCTTGTGAATGACGCCTTCCTAGAAACTG
CGAGAAGCTGGATATGCAATGTTGACGTCGCCCACATTAGACCTCCTGGT
GTGGTATGGATTACCGTGGATGACACGTCGTACGACTTTCTGAAAGAAGT
TAATAATTCTTATGCAATACGCATGAATGAGTTTCGGGGGGGTCAAGAAA
GGGAAGGAACGTCTTACGGTACACCGGGATACTGGCTACTAATGCTGGAG
CGGACAAAATTAATCCAGGCTATTCTTGACAACGGGATTGGTGTTTTCGC
GTTTGAAACGGACCAGATATGGTTGCGAGATCCCATTCCGTACGTGAACC
GTCTAGTGCACAGTGGAGATGAAGTCGATATTGTGGGTACGATAGATACT
CGCCATGAGATTGGGGGCAACTTTCTGTACCTCAGCCCTACGTTGGCAAT
GAGAAGAACCTGGCGAGAGGTATGCCGACGATTTGAGAAGTCGTACAGAA
CTAGTCGGCTTCATGGGCACACCGCTAAGTACAAACGTTACATGGAGAAT
GATCAGTCTATTTTGACGAAGCTAGTGTTCTTTGATAAGGAATTTAAGAA
CATGAACCCTACAATATTTCGTGCATTGGACACAGACTTATTTGTGGATG
GCCGGTGGTATGACAAAAAGAAGAAGTATTACGTTTCGTCAAAGTCTAAA
AGTCCTATTCTGATCAATAACAATTTCCTGGTCGGTATTGCGAACAAGAA
ACAGCGCGCTATTGAAAACGGCCATTGGTTTCTTACGGAGAATAAGTGTA
ACGTTGAAACAGTGAAGAGGGCCATAATACTGAATGAAGAAAGGGCGGGA
AGAGCTACTTCCGTCAGTGACGTTCTGGCATCCAAGATAGAGGGTGCTGA
TACCGAAGCTGGACTAGACGCAGCGCTAGCGGCTATTGCTAAGGAGCATG
GAAAACACTAG
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protein sequence of Gchil3208.t1

>Gchil3208.t1 ID=Gchil3208.t1|Name=Gchil3208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=537bp
MHVRNASSGGLFDWVMSAWTPSRDGNDVVLIVDASTQTSLPVTYSTYLRS
VMERHSEAQVAAYALAPVVVKRNGIIESYARVSDKAQVFFYQNTPLLPAL
AIRANVWRSFQTWFYAHRSEWFLWPIIVSPRDKKDAAWDQYHGTSRAHWT
LWFSRFCAEFELFNVYPAQKSLQPLSSHIAQESKSIEAFNFDGSPATTKS
SMATQNVAKIIQLGKRMGGSVSMTLVNDAFLETARSWICNVDVAHIRPPG
VVWITVDDTSYDFLKEVNNSYAIRMNEFRGGQEREGTSYGTPGYWLLMLE
RTKLIQAILDNGIGVFAFETDQIWLRDPIPYVNRLVHSGDEVDIVGTIDT
RHEIGGNFLYLSPTLAMRRTWREVCRRFEKSYRTSRLHGHTAKYKRYMEN
DQSILTKLVFFDKEFKNMNPTIFRALDTDLFVDGRWYDKKKKYYVSSKSK
SPILINNNFLVGIANKKQRAIENGHWFLTENKCNVETVKRAIILNEERAG
RATSVSDVLASKIEGADTEAGLDAALAAIAKEHGKH*
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mRNA from alignment at tig00004382_pilon:925275..926885-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3208.t1 ID=Gchil3208.t1|Name=Gchil3208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00004382_pilon:925275..926885- (Gracilaria chilensis NLEC103_M9 male)
ATGCACGTGCGCAATGCGTCGTCAGGTGGATTATTCGACTGGGTCATGAG
CGCATGGACTCCTTCACGCGATGGCAACGATGTAGTGCTTATTGTCGACG
CTTCTACACAAACATCTCTACCAGTCACGTACTCTACATATCTCAGATCA
GTAATGGAACGTCATTCGGAGGCTCAAGTAGCTGCTTATGCGCTCGCACC
TGTCGTGGTTAAACGAAACGGTATCATTGAGTCTTATGCTCGCGTGTCCG
ATAAGGCTCAGGTCTTCTTTTATCAAAACACCCCGCTACTTCCTGCTCTT
GCAATACGTGCAAACGTCTGGCGGTCTTTCCAAACATGGTTTTATGCACA
TCGTTCGGAATGGTTTCTTTGGCCCATCATCGTTTCGCCTCGTGATAAAA
AGGATGCGGCGTGGGATCAGTACCACGGCACTTCTCGAGCACATTGGACT
CTCTGGTTTTCAAGGTTCTGTGCTGAGTTCGAGTTGTTTAATGTATATCC
GGCGCAAAAATCACTGCAGCCGTTATCTTCGCATATTGCGCAAGAATCAA
AGAGCATAGAAGCATTTAATTTTGATGGGAGTCCGGCCACTACGAAGTCC
AGTATGGCTACTCAGAATGTTGCCAAAATCATTCAACTTGGGAAACGGAT
GGGAGGGTCAGTGTCAATGACTCTTGTGAATGACGCCTTCCTAGAAACTG
CGAGAAGCTGGATATGCAATGTTGACGTCGCCCACATTAGACCTCCTGGT
GTGGTATGGATTACCGTGGATGACACGTCGTACGACTTTCTGAAAGAAGT
TAATAATTCTTATGCAATACGCATGAATGAGTTTCGGGGGGGTCAAGAAA
GGGAAGGAACGTCTTACGGTACACCGGGATACTGGCTACTAATGCTGGAG
CGGACAAAATTAATCCAGGCTATTCTTGACAACGGGATTGGTGTTTTCGC
GTTTGAAACGGACCAGATATGGTTGCGAGATCCCATTCCGTACGTGAACC
GTCTAGTGCACAGTGGAGATGAAGTCGATATTGTGGGTACGATAGATACT
CGCCATGAGATTGGGGGCAACTTTCTGTACCTCAGCCCTACGTTGGCAAT
GAGAAGAACCTGGCGAGAGGTATGCCGACGATTTGAGAAGTCGTACAGAA
CTAGTCGGCTTCATGGGCACACCGCTAAGTACAAACGTTACATGGAGAAT
GATCAGTCTATTTTGACGAAGCTAGTGTTCTTTGATAAGGAATTTAAGAA
CATGAACCCTACAATATTTCGTGCATTGGACACAGACTTATTTGTGGATG
GCCGGTGGTATGACAAAAAGAAGAAGTATTACGTTTCGTCAAAGTCTAAA
AGTCCTATTCTGATCAATAACAATTTCCTGGTCGGTATTGCGAACAAGAA
ACAGCGCGCTATTGAAAACGGCCATTGGTTTCTTACGGAGAATAAGTGTA
ACGTTGAAACAGTGAAGAGGGCCATAATACTGAATGAAGAAAGGGCGGGA
AGAGCTACTTCCGTCAGTGACGTTCTGGCATCCAAGATAGAGGGTGCTGA
TACCGAAGCTGGACTAGACGCAGCGCTAGCGGCTATTGCTAAGGAGCATG
GAAAACACTAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:925275..926885-

>Gchil3208.t1 ID=Gchil3208.t1|Name=Gchil3208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1611bp|location=Sequence derived from alignment at tig00004382_pilon:925275..926885- (Gracilaria chilensis NLEC103_M9 male)
ATGCACGTGCGCAATGCGTCGTCAGGTGGATTATTCGACTGGGTCATGAG
CGCATGGACTCCTTCACGCGATGGCAACGATGTAGTGCTTATTGTCGACG
CTTCTACACAAACATCTCTACCAGTCACGTACTCTACATATCTCAGATCA
GTAATGGAACGTCATTCGGAGGCTCAAGTAGCTGCTTATGCGCTCGCACC
TGTCGTGGTTAAACGAAACGGTATCATTGAGTCTTATGCTCGCGTGTCCG
ATAAGGCTCAGGTCTTCTTTTATCAAAACACCCCGCTACTTCCTGCTCTT
GCAATACGTGCAAACGTCTGGCGGTCTTTCCAAACATGGTTTTATGCACA
TCGTTCGGAATGGTTTCTTTGGCCCATCATCGTTTCGCCTCGTGATAAAA
AGGATGCGGCGTGGGATCAGTACCACGGCACTTCTCGAGCACATTGGACT
CTCTGGTTTTCAAGGTTCTGTGCTGAGTTCGAGTTGTTTAATGTATATCC
GGCGCAAAAATCACTGCAGCCGTTATCTTCGCATATTGCGCAAGAATCAA
AGAGCATAGAAGCATTTAATTTTGATGGGAGTCCGGCCACTACGAAGTCC
AGTATGGCTACTCAGAATGTTGCCAAAATCATTCAACTTGGGAAACGGAT
GGGAGGGTCAGTGTCAATGACTCTTGTGAATGACGCCTTCCTAGAAACTG
CGAGAAGCTGGATATGCAATGTTGACGTCGCCCACATTAGACCTCCTGGT
GTGGTATGGATTACCGTGGATGACACGTCGTACGACTTTCTGAAAGAAGT
TAATAATTCTTATGCAATACGCATGAATGAGTTTCGGGGGGGTCAAGAAA
GGGAAGGAACGTCTTACGGTACACCGGGATACTGGCTACTAATGCTGGAG
CGGACAAAATTAATCCAGGCTATTCTTGACAACGGGATTGGTGTTTTCGC
GTTTGAAACGGACCAGATATGGTTGCGAGATCCCATTCCGTACGTGAACC
GTCTAGTGCACAGTGGAGATGAAGTCGATATTGTGGGTACGATAGATACT
CGCCATGAGATTGGGGGCAACTTTCTGTACCTCAGCCCTACGTTGGCAAT
GAGAAGAACCTGGCGAGAGGTATGCCGACGATTTGAGAAGTCGTACAGAA
CTAGTCGGCTTCATGGGCACACCGCTAAGTACAAACGTTACATGGAGAAT
GATCAGTCTATTTTGACGAAGCTAGTGTTCTTTGATAAGGAATTTAAGAA
CATGAACCCTACAATATTTCGTGCATTGGACACAGACTTATTTGTGGATG
GCCGGTGGTATGACAAAAAGAAGAAGTATTACGTTTCGTCAAAGTCTAAA
AGTCCTATTCTGATCAATAACAATTTCCTGGTCGGTATTGCGAACAAGAA
ACAGCGCGCTATTGAAAACGGCCATTGGTTTCTTACGGAGAATAAGTGTA
ACGTTGAAACAGTGAAGAGGGCCATAATACTGAATGAAGAAAGGGCGGGA
AGAGCTACTTCCGTCAGTGACGTTCTGGCATCCAAGATAGAGGGTGCTGA
TACCGAAGCTGGACTAGACGCAGCGCTAGCGGCTATTGCTAAGGAGCATG
GAAAACACTAG
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