Gchil3130.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3130.t1
Unique Name	Gchil3130.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	270

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:342716..343525 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1190603.AJYD01000026_gene3359
PFAMs	adh_short
Max annot lvl	135623\|Vibrionales
Evalue	6.65e-103
EggNOG OGs	COG1028@1\|root,COG1028@2\|Bacteria,1P9R4@1224\|Proteobacteria,1RYF6@1236\|Gammaproteobacteria,1XT36@135623\|Vibrionales
Description	KR domain
COG category	IQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3130	Gchil3130	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 342716..343525 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3130.t1.start1	Gchil3130.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 342716..342718 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3130.t1.CDS1	Gchil3130.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 342716..343525 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3130.t1.exon1	Gchil3130.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 342716..343525 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3130.t1.stop1	Gchil3130.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 343523..343525 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3130.t1	Gchil3130.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 342716..343525 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:342716..343525+
coding sequence from alignment at tig00004382_pilon:342716..343525+

mRNA sequence

>Gchil3130.t1 ID=Gchil3130.t1|Name=Gchil3130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=270bp
MQKTILITGATDGIGLETAKSLATLGHSLLIHGRNQNKLDTTRFLLSCIP
GAGAVDVYRADLSQLSEVEAMATAVTGKYASLDVLINNAGIFTALTPVIP
NSLDLRFVVNALAPYFLTKKILPIMQPRSRIINLSSAAQAPIKFEALFGS
ERLSNSAAYAQSKLAITMWSMHLAKSLGKNGPSVIVVNPASFLGSKMVRE
AYGIAGKDLKVGADILVRAALSDEFANASGRYFDNDQGKFARPHADALDA
RKNEKVVEAIESLLVSMRN*

spliced messenger RNA

>Gchil3130.t1 ID=Gchil3130.t1|Name=Gchil3130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00004382_pilon:342716..343525+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAAGACCATTCTAATCACTGGAGCCACAGACGGTATTGGCCTTGA
AACCGCCAAATCGCTCGCCACCCTTGGCCATTCCCTACTTATCCATGGTC
GCAACCAAAACAAACTCGATACCACCCGGTTTCTACTATCATGCATTCCT
GGCGCTGGAGCCGTGGATGTCTACCGCGCTGACTTGTCCCAGTTATCAGA
AGTTGAAGCAATGGCTACTGCTGTCACCGGAAAGTACGCATCACTGGATG
TTCTCATAAACAACGCAGGTATATTCACGGCTTTGACTCCTGTTATACCC
AATAGCCTGGACTTGCGTTTCGTTGTCAATGCCTTAGCACCATACTTCCT
GACCAAGAAGATTCTGCCAATTATGCAACCCCGAAGCCGCATTATCAACC
TTTCATCGGCCGCGCAAGCCCCAATAAAATTTGAAGCGCTCTTTGGCAGT
GAACGCCTGAGCAATAGTGCAGCGTATGCCCAGAGTAAGCTTGCAATCAC
CATGTGGTCAATGCACCTCGCCAAGTCCCTCGGAAAGAATGGTCCTTCTG
TTATTGTTGTGAATCCTGCATCTTTTCTAGGAAGCAAGATGGTGAGGGAA
GCCTATGGTATCGCTGGAAAAGATTTGAAAGTAGGTGCAGATATTCTTGT
CCGTGCTGCTTTGAGCGACGAATTCGCGAATGCATCCGGGCGCTATTTCG
ATAACGATCAGGGTAAGTTTGCCCGTCCGCACGCAGATGCACTGGATGCA
AGGAAGAATGAAAAAGTTGTTGAAGCAATCGAAAGTTTACTAGTTTCCAT
GAGGAACTAA

protein sequence of Gchil3130.t1

>Gchil3130.t1 ID=Gchil3130.t1|Name=Gchil3130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=270bp
MQKTILITGATDGIGLETAKSLATLGHSLLIHGRNQNKLDTTRFLLSCIP
GAGAVDVYRADLSQLSEVEAMATAVTGKYASLDVLINNAGIFTALTPVIP
NSLDLRFVVNALAPYFLTKKILPIMQPRSRIINLSSAAQAPIKFEALFGS
ERLSNSAAYAQSKLAITMWSMHLAKSLGKNGPSVIVVNPASFLGSKMVRE
AYGIAGKDLKVGADILVRAALSDEFANASGRYFDNDQGKFARPHADALDA
RKNEKVVEAIESLLVSMRN*

mRNA from alignment at tig00004382_pilon:342716..343525+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3130.t1 ID=Gchil3130.t1|Name=Gchil3130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00004382_pilon:342716..343525+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAAGACCATTCTAATCACTGGAGCCACAGACGGTATTGGCCTTGA
AACCGCCAAATCGCTCGCCACCCTTGGCCATTCCCTACTTATCCATGGTC
GCAACCAAAACAAACTCGATACCACCCGGTTTCTACTATCATGCATTCCT
GGCGCTGGAGCCGTGGATGTCTACCGCGCTGACTTGTCCCAGTTATCAGA
AGTTGAAGCAATGGCTACTGCTGTCACCGGAAAGTACGCATCACTGGATG
TTCTCATAAACAACGCAGGTATATTCACGGCTTTGACTCCTGTTATACCC
AATAGCCTGGACTTGCGTTTCGTTGTCAATGCCTTAGCACCATACTTCCT
GACCAAGAAGATTCTGCCAATTATGCAACCCCGAAGCCGCATTATCAACC
TTTCATCGGCCGCGCAAGCCCCAATAAAATTTGAAGCGCTCTTTGGCAGT
GAACGCCTGAGCAATAGTGCAGCGTATGCCCAGAGTAAGCTTGCAATCAC
CATGTGGTCAATGCACCTCGCCAAGTCCCTCGGAAAGAATGGTCCTTCTG
TTATTGTTGTGAATCCTGCATCTTTTCTAGGAAGCAAGATGGTGAGGGAA
GCCTATGGTATCGCTGGAAAAGATTTGAAAGTAGGTGCAGATATTCTTGT
CCGTGCTGCTTTGAGCGACGAATTCGCGAATGCATCCGGGCGCTATTTCG
ATAACGATCAGGGTAAGTTTGCCCGTCCGCACGCAGATGCACTGGATGCA
AGGAAGAATGAAAAAGTTGTTGAAGCAATCGAAAGTTTACTAGTTTCCAT
GAGGAACTAA

Coding sequence (CDS) from alignment at tig00004382_pilon:342716..343525+

>Gchil3130.t1 ID=Gchil3130.t1|Name=Gchil3130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=810bp|location=Sequence derived from alignment at tig00004382_pilon:342716..343525+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAAGACCATTCTAATCACTGGAGCCACAGACGGTATTGGCCTTGA
AACCGCCAAATCGCTCGCCACCCTTGGCCATTCCCTACTTATCCATGGTC
GCAACCAAAACAAACTCGATACCACCCGGTTTCTACTATCATGCATTCCT
GGCGCTGGAGCCGTGGATGTCTACCGCGCTGACTTGTCCCAGTTATCAGA
AGTTGAAGCAATGGCTACTGCTGTCACCGGAAAGTACGCATCACTGGATG
TTCTCATAAACAACGCAGGTATATTCACGGCTTTGACTCCTGTTATACCC
AATAGCCTGGACTTGCGTTTCGTTGTCAATGCCTTAGCACCATACTTCCT
GACCAAGAAGATTCTGCCAATTATGCAACCCCGAAGCCGCATTATCAACC
TTTCATCGGCCGCGCAAGCCCCAATAAAATTTGAAGCGCTCTTTGGCAGT
GAACGCCTGAGCAATAGTGCAGCGTATGCCCAGAGTAAGCTTGCAATCAC
CATGTGGTCAATGCACCTCGCCAAGTCCCTCGGAAAGAATGGTCCTTCTG
TTATTGTTGTGAATCCTGCATCTTTTCTAGGAAGCAAGATGGTGAGGGAA
GCCTATGGTATCGCTGGAAAAGATTTGAAAGTAGGTGCAGATATTCTTGT
CCGTGCTGCTTTGAGCGACGAATTCGCGAATGCATCCGGGCGCTATTTCG
ATAACGATCAGGGTAAGTTTGCCCGTCCGCACGCAGATGCACTGGATGCA
AGGAAGAATGAAAAAGTTGTTGAAGCAATCGAAAGTTTACTAGTTTCCAT
GAGGAACTAA