Gchil3106.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3106.t1
Unique Name	Gchil3106.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	530

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:106038..107627 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	401526.TcarDRAFT_1947
PFAMs	CAP
Max annot lvl	909932\|Negativicutes
Evalue	1.01e-05
EggNOG OGs	COG2340@1\|root,COG2340@2\|Bacteria,1V6GZ@1239\|Firmicutes,4H4BG@909932\|Negativicutes
Description	Cysteine-rich secretory protein family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3106	Gchil3106	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 106038..107627 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3106.t1.start1	Gchil3106.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 106038..106040 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3106.t1.CDS1	Gchil3106.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 106038..107627 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3106.t1.exon1	Gchil3106.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 106038..107627 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3106.t1.stop1	Gchil3106.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 107625..107627 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3106.t1	Gchil3106.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 106038..107627 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:106038..107627+
coding sequence from alignment at tig00004382_pilon:106038..107627+

mRNA sequence

>Gchil3106.t1 ID=Gchil3106.t1|Name=Gchil3106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=530bp
MSSYRLLVPLGCWTHALLLIVLWSLLESPVSTSEKIPGHMCILDAKGNYN
CNQDSGASLQQLERKSQPCPKGDNKCWCMKAISYTNDVRRRHGKKKMLKS
GPMTQLQNAMRYAVTLANIGNLEHQDLAAATNEVGCNRRIRGENIAYNYN
KGDAAFSCVQQWEKSPPHLENILRDNFDEVAVGFFNAENGRVYCVQTFSE
VDKAILESNENSDPCASIEQGIKEEATNTMTEAQEHAGERDEAIEQPMSM
AAETEGHTNAKGNREFEGIPQHSLQPRYDEDEQNLATAGDEIEDRGMSEE
QVPETQKLSTKSGVSKNSASEIQNPRPNRKDSRKKGRNVLDGIADFYAKA
NQTSGNTSITVSVGDGNSFNKVSDDLQNDPQKDNVRSVEKEDSTEDGEST
RTEWKEGDEGDKARDVREEGSHQMDNQEPRDHDSEQNMTVEKKELMSQKK
ANVGNRACRCLELGKECWYSLEQQTHKLCTSLLSSKRQPTGCKMKCCSYC
LTKPKSRRCTNKVVKRLCRRMRKVIERGM*

spliced messenger RNA

>Gchil3106.t1 ID=Gchil3106.t1|Name=Gchil3106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00004382_pilon:106038..107627+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCATACAGATTGCTGGTTCCGCTGGGATGTTGGACTCATGCATT
GCTTCTAATTGTTTTATGGTCACTCTTAGAATCTCCAGTATCTACCTCTG
AAAAGATTCCTGGGCATATGTGTATTCTGGATGCGAAGGGTAACTATAAT
TGTAATCAAGATTCTGGGGCATCTTTACAACAACTTGAACGGAAATCCCA
ACCTTGTCCAAAAGGAGATAACAAATGCTGGTGTATGAAAGCAATTTCCT
ACACCAATGACGTTAGAAGACGGCATGGTAAGAAGAAAATGTTGAAATCT
GGACCAATGACACAATTGCAGAACGCAATGCGCTACGCGGTGACTTTAGC
GAACATTGGTAACCTTGAACACCAAGATTTGGCAGCAGCAACAAATGAAG
TTGGATGCAATCGCAGGATCAGGGGAGAAAATATTGCGTACAACTATAAT
AAAGGGGACGCCGCGTTTTCATGTGTGCAGCAATGGGAAAAATCACCGCC
GCATTTAGAAAACATACTGAGAGACAACTTCGACGAAGTCGCTGTTGGGT
TTTTTAATGCTGAGAATGGTCGGGTATATTGCGTTCAGACTTTTTCAGAG
GTCGACAAGGCCATTTTGGAAAGCAATGAGAACAGTGACCCATGTGCATC
AATTGAACAAGGTATAAAGGAAGAAGCAACAAACACAATGACGGAAGCTC
AAGAACATGCAGGCGAAAGGGATGAAGCTATCGAGCAACCCATGTCAATG
GCGGCTGAGACTGAAGGACATACGAACGCTAAAGGCAATAGAGAGTTTGA
AGGTATTCCACAACATTCTCTGCAACCAAGATATGATGAAGATGAGCAAA
ACTTAGCTACAGCCGGTGACGAAATTGAAGATCGTGGTATGAGCGAAGAA
CAAGTGCCTGAAACCCAGAAACTTTCAACTAAATCGGGAGTCTCAAAGAA
TTCTGCTTCTGAAATCCAAAATCCTCGTCCTAACCGTAAAGATTCTCGAA
AGAAAGGTCGAAACGTCTTGGACGGCATTGCAGATTTCTATGCAAAAGCA
AACCAAACCTCTGGTAACACTTCCATCACTGTTTCCGTGGGTGACGGAAA
TTCGTTCAATAAAGTCAGCGATGATTTACAAAATGATCCTCAGAAAGACA
ACGTTCGTTCTGTCGAGAAGGAAGATTCCACTGAAGATGGGGAATCAACG
CGAACGGAGTGGAAAGAGGGAGACGAAGGTGACAAAGCGAGAGATGTCAG
GGAGGAAGGGTCCCATCAAATGGATAATCAAGAGCCTCGCGATCATGACA
GCGAACAGAATATGACCGTGGAAAAAAAAGAGCTCATGAGCCAAAAAAAA
GCTAACGTTGGCAACAGGGCTTGTCGATGTCTAGAGCTTGGAAAGGAATG
CTGGTATTCCCTTGAGCAACAAACACACAAGCTATGTACATCGCTTCTTT
CTTCCAAGAGGCAACCGACGGGATGCAAGATGAAATGTTGCAGCTATTGC
TTAACGAAGCCGAAGTCGCGTCGATGCACCAACAAAGTGGTCAAGAGGCT
CTGCCGGAGGATGAGGAAGGTTATCGAAAGGGGAATGTAA

protein sequence of Gchil3106.t1

>Gchil3106.t1 ID=Gchil3106.t1|Name=Gchil3106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=530bp
MSSYRLLVPLGCWTHALLLIVLWSLLESPVSTSEKIPGHMCILDAKGNYN
CNQDSGASLQQLERKSQPCPKGDNKCWCMKAISYTNDVRRRHGKKKMLKS
GPMTQLQNAMRYAVTLANIGNLEHQDLAAATNEVGCNRRIRGENIAYNYN
KGDAAFSCVQQWEKSPPHLENILRDNFDEVAVGFFNAENGRVYCVQTFSE
VDKAILESNENSDPCASIEQGIKEEATNTMTEAQEHAGERDEAIEQPMSM
AAETEGHTNAKGNREFEGIPQHSLQPRYDEDEQNLATAGDEIEDRGMSEE
QVPETQKLSTKSGVSKNSASEIQNPRPNRKDSRKKGRNVLDGIADFYAKA
NQTSGNTSITVSVGDGNSFNKVSDDLQNDPQKDNVRSVEKEDSTEDGEST
RTEWKEGDEGDKARDVREEGSHQMDNQEPRDHDSEQNMTVEKKELMSQKK
ANVGNRACRCLELGKECWYSLEQQTHKLCTSLLSSKRQPTGCKMKCCSYC
LTKPKSRRCTNKVVKRLCRRMRKVIERGM*

mRNA from alignment at tig00004382_pilon:106038..107627+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3106.t1 ID=Gchil3106.t1|Name=Gchil3106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00004382_pilon:106038..107627+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCATACAGATTGCTGGTTCCGCTGGGATGTTGGACTCATGCATT
GCTTCTAATTGTTTTATGGTCACTCTTAGAATCTCCAGTATCTACCTCTG
AAAAGATTCCTGGGCATATGTGTATTCTGGATGCGAAGGGTAACTATAAT
TGTAATCAAGATTCTGGGGCATCTTTACAACAACTTGAACGGAAATCCCA
ACCTTGTCCAAAAGGAGATAACAAATGCTGGTGTATGAAAGCAATTTCCT
ACACCAATGACGTTAGAAGACGGCATGGTAAGAAGAAAATGTTGAAATCT
GGACCAATGACACAATTGCAGAACGCAATGCGCTACGCGGTGACTTTAGC
GAACATTGGTAACCTTGAACACCAAGATTTGGCAGCAGCAACAAATGAAG
TTGGATGCAATCGCAGGATCAGGGGAGAAAATATTGCGTACAACTATAAT
AAAGGGGACGCCGCGTTTTCATGTGTGCAGCAATGGGAAAAATCACCGCC
GCATTTAGAAAACATACTGAGAGACAACTTCGACGAAGTCGCTGTTGGGT
TTTTTAATGCTGAGAATGGTCGGGTATATTGCGTTCAGACTTTTTCAGAG
GTCGACAAGGCCATTTTGGAAAGCAATGAGAACAGTGACCCATGTGCATC
AATTGAACAAGGTATAAAGGAAGAAGCAACAAACACAATGACGGAAGCTC
AAGAACATGCAGGCGAAAGGGATGAAGCTATCGAGCAACCCATGTCAATG
GCGGCTGAGACTGAAGGACATACGAACGCTAAAGGCAATAGAGAGTTTGA
AGGTATTCCACAACATTCTCTGCAACCAAGATATGATGAAGATGAGCAAA
ACTTAGCTACAGCCGGTGACGAAATTGAAGATCGTGGTATGAGCGAAGAA
CAAGTGCCTGAAACCCAGAAACTTTCAACTAAATCGGGAGTCTCAAAGAA
TTCTGCTTCTGAAATCCAAAATCCTCGTCCTAACCGTAAAGATTCTCGAA
AGAAAGGTCGAAACGTCTTGGACGGCATTGCAGATTTCTATGCAAAAGCA
AACCAAACCTCTGGTAACACTTCCATCACTGTTTCCGTGGGTGACGGAAA
TTCGTTCAATAAAGTCAGCGATGATTTACAAAATGATCCTCAGAAAGACA
ACGTTCGTTCTGTCGAGAAGGAAGATTCCACTGAAGATGGGGAATCAACG
CGAACGGAGTGGAAAGAGGGAGACGAAGGTGACAAAGCGAGAGATGTCAG
GGAGGAAGGGTCCCATCAAATGGATAATCAAGAGCCTCGCGATCATGACA
GCGAACAGAATATGACCGTGGAAAAAAAAGAGCTCATGAGCCAAAAAAAA
GCTAACGTTGGCAACAGGGCTTGTCGATGTCTAGAGCTTGGAAAGGAATG
CTGGTATTCCCTTGAGCAACAAACACACAAGCTATGTACATCGCTTCTTT
CTTCCAAGAGGCAACCGACGGGATGCAAGATGAAATGTTGCAGCTATTGC
TTAACGAAGCCGAAGTCGCGTCGATGCACCAACAAAGTGGTCAAGAGGCT
CTGCCGGAGGATGAGGAAGGTTATCGAAAGGGGAATGTAA

Coding sequence (CDS) from alignment at tig00004382_pilon:106038..107627+

>Gchil3106.t1 ID=Gchil3106.t1|Name=Gchil3106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1590bp|location=Sequence derived from alignment at tig00004382_pilon:106038..107627+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCATACAGATTGCTGGTTCCGCTGGGATGTTGGACTCATGCATT
GCTTCTAATTGTTTTATGGTCACTCTTAGAATCTCCAGTATCTACCTCTG
AAAAGATTCCTGGGCATATGTGTATTCTGGATGCGAAGGGTAACTATAAT
TGTAATCAAGATTCTGGGGCATCTTTACAACAACTTGAACGGAAATCCCA
ACCTTGTCCAAAAGGAGATAACAAATGCTGGTGTATGAAAGCAATTTCCT
ACACCAATGACGTTAGAAGACGGCATGGTAAGAAGAAAATGTTGAAATCT
GGACCAATGACACAATTGCAGAACGCAATGCGCTACGCGGTGACTTTAGC
GAACATTGGTAACCTTGAACACCAAGATTTGGCAGCAGCAACAAATGAAG
TTGGATGCAATCGCAGGATCAGGGGAGAAAATATTGCGTACAACTATAAT
AAAGGGGACGCCGCGTTTTCATGTGTGCAGCAATGGGAAAAATCACCGCC
GCATTTAGAAAACATACTGAGAGACAACTTCGACGAAGTCGCTGTTGGGT
TTTTTAATGCTGAGAATGGTCGGGTATATTGCGTTCAGACTTTTTCAGAG
GTCGACAAGGCCATTTTGGAAAGCAATGAGAACAGTGACCCATGTGCATC
AATTGAACAAGGTATAAAGGAAGAAGCAACAAACACAATGACGGAAGCTC
AAGAACATGCAGGCGAAAGGGATGAAGCTATCGAGCAACCCATGTCAATG
GCGGCTGAGACTGAAGGACATACGAACGCTAAAGGCAATAGAGAGTTTGA
AGGTATTCCACAACATTCTCTGCAACCAAGATATGATGAAGATGAGCAAA
ACTTAGCTACAGCCGGTGACGAAATTGAAGATCGTGGTATGAGCGAAGAA
CAAGTGCCTGAAACCCAGAAACTTTCAACTAAATCGGGAGTCTCAAAGAA
TTCTGCTTCTGAAATCCAAAATCCTCGTCCTAACCGTAAAGATTCTCGAA
AGAAAGGTCGAAACGTCTTGGACGGCATTGCAGATTTCTATGCAAAAGCA
AACCAAACCTCTGGTAACACTTCCATCACTGTTTCCGTGGGTGACGGAAA
TTCGTTCAATAAAGTCAGCGATGATTTACAAAATGATCCTCAGAAAGACA
ACGTTCGTTCTGTCGAGAAGGAAGATTCCACTGAAGATGGGGAATCAACG
CGAACGGAGTGGAAAGAGGGAGACGAAGGTGACAAAGCGAGAGATGTCAG
GGAGGAAGGGTCCCATCAAATGGATAATCAAGAGCCTCGCGATCATGACA
GCGAACAGAATATGACCGTGGAAAAAAAAGAGCTCATGAGCCAAAAAAAA
GCTAACGTTGGCAACAGGGCTTGTCGATGTCTAGAGCTTGGAAAGGAATG
CTGGTATTCCCTTGAGCAACAAACACACAAGCTATGTACATCGCTTCTTT
CTTCCAAGAGGCAACCGACGGGATGCAAGATGAAATGTTGCAGCTATTGC
TTAACGAAGCCGAAGTCGCGTCGATGCACCAACAAAGTGGTCAAGAGGCT
CTGCCGGAGGATGAGGAAGGTTATCGAAAGGGGAATGTAA