Gchil3829.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3829.t1
Unique NameGchil3829.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length650
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:825561..827510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog313596.RB2501_13599
PFAMsCollagen_bind_2,DUF5060
Max annot lvl976|Bacteroidetes
Evalue2.72e-135
EggNOG OGsCOG5492@1|root,COG5492@2|Bacteria,4NEAB@976|Bacteroidetes,1HZEP@117743|Flavobacteriia
DescriptionDomain of unknown function (DUF5060)
COG categoryN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3829Gchil3829Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 825561..827510 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3829.t1.stop1Gchil3829.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 825561..825563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3829.t1.CDS1Gchil3829.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 825561..827510 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3829.t1.exon1Gchil3829.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 825561..827510 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3829.t1.start1Gchil3829.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 827508..827510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3829.t1Gchil3829.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 825561..827510 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3829.t1 ID=Gchil3829.t1|Name=Gchil3829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=650bp
MWSSTYLVLCFIAFARAAEVSPAKPARWELVTIDFEGPRTSEVATPNPFT
NFRLDVTFTHHSSKVKHVIPGFYAADGNAAHTSAESGNIWRVRFTPARTG
KWSYVASFRKGNFIAVKDIDGVPASFDGESGDFTVGVGEFKAPDLRAKGR
LQYVGQRYYRYANGEYKLKLGTNTPENLLAYEGFDGEPTPLSFESHLKDW
RSGDPTWGDSGRGKEMIGAVNYLSKMGVNSLFAISMTVKGDSDGQVHPWR
SRSDRIRYDVSKLEQWEIVFDHAERKGISLNLAFCETENEAIFEHEEKIS
KQTGFALSRKVYYREIIARFSHHLGFATIIGEENGWSEEKKNGGGFPWGV
GNTHQQRKIFSRFIRDTDPYKSPIGVHTYPSLKNEVYTPMLGPRSGVRHE
SASLQMGRKWSTYHETKHWVDQSIVHGMPWVVAADEIGADWEGLPGGIPP
ASAGKPNMSFRAVLCWGNIMAGGAGVEVFSGRVDQSLSNFREFDSIWAEF
SRPLRLFDEHNIPFWAMHAYSDIVSPKKKLNNNQWMYGFAKRGDVYVIYQ
SGEIEPLLNLSGVTGKFHVRWFNPRPSSSSNLELGSVLTVVGGGAKVEVG
KPPFESGRDWAIVVSRTFPLSNTATKASSVSPHDLIPGSLTFGTNTSHW*
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spliced messenger RNA

>Gchil3829.t1 ID=Gchil3829.t1|Name=Gchil3829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at tig00000010_pilon:825561..827510- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTCCTCTACGTATCTTGTTCTCTGCTTCATTGCGTTTGCACGGGC
TGCTGAGGTCTCTCCAGCGAAACCTGCGCGATGGGAGCTTGTTACAATTG
ACTTTGAAGGCCCGCGCACCAGTGAAGTCGCTACACCAAACCCCTTCACA
AACTTTCGTCTTGATGTCACTTTCACTCACCACTCTTCCAAAGTCAAACA
TGTCATCCCTGGCTTTTATGCAGCAGATGGAAATGCCGCTCACACTTCAG
CAGAAAGCGGAAACATCTGGCGCGTGCGTTTCACACCTGCAAGAACTGGG
AAGTGGTCCTATGTCGCTTCTTTTCGCAAGGGCAATTTCATAGCAGTGAA
AGATATAGATGGCGTTCCGGCATCTTTCGATGGCGAGAGTGGGGATTTTA
CGGTAGGTGTGGGCGAATTCAAGGCACCGGATTTGCGGGCAAAGGGCAGA
CTCCAATACGTTGGTCAGAGATATTATCGTTACGCCAACGGAGAATACAA
ACTGAAACTCGGCACGAATACACCGGAAAATTTGCTCGCCTACGAGGGGT
TCGATGGGGAACCGACACCACTGTCTTTTGAGTCGCATCTGAAGGACTGG
AGGAGTGGAGACCCGACATGGGGTGACAGTGGTCGCGGCAAGGAAATGAT
TGGAGCTGTCAACTACCTCTCCAAAATGGGAGTCAACTCTTTGTTTGCCA
TTTCAATGACTGTAAAGGGCGACAGCGATGGACAAGTTCATCCATGGCGT
TCGCGATCCGACCGCATTCGATATGACGTAAGCAAGCTAGAGCAATGGGA
AATTGTTTTCGATCATGCCGAGCGAAAGGGAATCTCACTCAATTTGGCTT
TTTGCGAGACTGAGAACGAAGCCATTTTCGAACATGAAGAGAAGATTTCA
AAACAAACTGGCTTCGCTTTATCAAGGAAAGTTTACTACAGAGAGATCAT
AGCTCGTTTCTCGCACCATCTCGGATTCGCTACTATAATTGGCGAAGAGA
ACGGTTGGTCGGAAGAGAAAAAAAACGGCGGGGGGTTCCCGTGGGGAGTA
GGCAATACTCACCAACAGCGAAAAATATTCTCGCGGTTTATCAGAGATAC
CGATCCCTACAAATCTCCTATTGGAGTGCACACATATCCATCACTCAAAA
ATGAAGTGTATACTCCCATGCTCGGTCCTCGGAGCGGAGTTCGCCATGAG
TCAGCCTCTCTCCAGATGGGCCGAAAGTGGTCGACCTATCATGAAACCAA
GCATTGGGTTGATCAATCCATTGTGCATGGTATGCCGTGGGTCGTTGCGG
CAGATGAAATAGGGGCTGACTGGGAAGGCCTGCCTGGGGGCATTCCTCCT
GCGAGTGCTGGAAAGCCAAATATGAGCTTTCGCGCTGTCCTCTGTTGGGG
TAACATCATGGCCGGAGGTGCTGGTGTTGAAGTGTTTTCTGGGAGGGTGG
ATCAATCTCTCTCCAACTTTCGGGAATTTGACTCAATATGGGCAGAATTT
TCGCGCCCTCTACGGCTGTTTGATGAGCATAACATCCCGTTTTGGGCTAT
GCATGCTTATTCTGATATAGTCAGCCCAAAGAAAAAGCTAAACAACAATC
AGTGGATGTACGGGTTTGCCAAACGTGGTGACGTTTACGTCATCTACCAA
AGCGGTGAGATTGAACCATTGCTGAATCTTTCCGGAGTTACTGGAAAATT
CCACGTGAGATGGTTCAATCCCCGCCCAAGTTCCTCTTCGAATCTTGAGC
TCGGAAGTGTGCTAACAGTTGTTGGAGGTGGTGCCAAGGTCGAAGTTGGA
AAGCCACCGTTTGAAAGCGGTCGCGATTGGGCAATTGTTGTTTCCAGGAC
TTTTCCTCTAAGCAATACTGCCACGAAAGCGAGCAGTGTATCTCCACACG
ATCTTATCCCAGGGAGTTTAACTTTCGGTACCAATACGTCGCATTGGTGA
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protein sequence of Gchil3829.t1

>Gchil3829.t1 ID=Gchil3829.t1|Name=Gchil3829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=650bp
MWSSTYLVLCFIAFARAAEVSPAKPARWELVTIDFEGPRTSEVATPNPFT
NFRLDVTFTHHSSKVKHVIPGFYAADGNAAHTSAESGNIWRVRFTPARTG
KWSYVASFRKGNFIAVKDIDGVPASFDGESGDFTVGVGEFKAPDLRAKGR
LQYVGQRYYRYANGEYKLKLGTNTPENLLAYEGFDGEPTPLSFESHLKDW
RSGDPTWGDSGRGKEMIGAVNYLSKMGVNSLFAISMTVKGDSDGQVHPWR
SRSDRIRYDVSKLEQWEIVFDHAERKGISLNLAFCETENEAIFEHEEKIS
KQTGFALSRKVYYREIIARFSHHLGFATIIGEENGWSEEKKNGGGFPWGV
GNTHQQRKIFSRFIRDTDPYKSPIGVHTYPSLKNEVYTPMLGPRSGVRHE
SASLQMGRKWSTYHETKHWVDQSIVHGMPWVVAADEIGADWEGLPGGIPP
ASAGKPNMSFRAVLCWGNIMAGGAGVEVFSGRVDQSLSNFREFDSIWAEF
SRPLRLFDEHNIPFWAMHAYSDIVSPKKKLNNNQWMYGFAKRGDVYVIYQ
SGEIEPLLNLSGVTGKFHVRWFNPRPSSSSNLELGSVLTVVGGGAKVEVG
KPPFESGRDWAIVVSRTFPLSNTATKASSVSPHDLIPGSLTFGTNTSHW*
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mRNA from alignment at tig00000010_pilon:825561..827510-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3829.t1 ID=Gchil3829.t1|Name=Gchil3829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at tig00000010_pilon:825561..827510- (Gracilaria chilensis NLEC103_M9 male)
ATGTGGTCCTCTACGTATCTTGTTCTCTGCTTCATTGCGTTTGCACGGGC
TGCTGAGGTCTCTCCAGCGAAACCTGCGCGATGGGAGCTTGTTACAATTG
ACTTTGAAGGCCCGCGCACCAGTGAAGTCGCTACACCAAACCCCTTCACA
AACTTTCGTCTTGATGTCACTTTCACTCACCACTCTTCCAAAGTCAAACA
TGTCATCCCTGGCTTTTATGCAGCAGATGGAAATGCCGCTCACACTTCAG
CAGAAAGCGGAAACATCTGGCGCGTGCGTTTCACACCTGCAAGAACTGGG
AAGTGGTCCTATGTCGCTTCTTTTCGCAAGGGCAATTTCATAGCAGTGAA
AGATATAGATGGCGTTCCGGCATCTTTCGATGGCGAGAGTGGGGATTTTA
CGGTAGGTGTGGGCGAATTCAAGGCACCGGATTTGCGGGCAAAGGGCAGA
CTCCAATACGTTGGTCAGAGATATTATCGTTACGCCAACGGAGAATACAA
ACTGAAACTCGGCACGAATACACCGGAAAATTTGCTCGCCTACGAGGGGT
TCGATGGGGAACCGACACCACTGTCTTTTGAGTCGCATCTGAAGGACTGG
AGGAGTGGAGACCCGACATGGGGTGACAGTGGTCGCGGCAAGGAAATGAT
TGGAGCTGTCAACTACCTCTCCAAAATGGGAGTCAACTCTTTGTTTGCCA
TTTCAATGACTGTAAAGGGCGACAGCGATGGACAAGTTCATCCATGGCGT
TCGCGATCCGACCGCATTCGATATGACGTAAGCAAGCTAGAGCAATGGGA
AATTGTTTTCGATCATGCCGAGCGAAAGGGAATCTCACTCAATTTGGCTT
TTTGCGAGACTGAGAACGAAGCCATTTTCGAACATGAAGAGAAGATTTCA
AAACAAACTGGCTTCGCTTTATCAAGGAAAGTTTACTACAGAGAGATCAT
AGCTCGTTTCTCGCACCATCTCGGATTCGCTACTATAATTGGCGAAGAGA
ACGGTTGGTCGGAAGAGAAAAAAAACGGCGGGGGGTTCCCGTGGGGAGTA
GGCAATACTCACCAACAGCGAAAAATATTCTCGCGGTTTATCAGAGATAC
CGATCCCTACAAATCTCCTATTGGAGTGCACACATATCCATCACTCAAAA
ATGAAGTGTATACTCCCATGCTCGGTCCTCGGAGCGGAGTTCGCCATGAG
TCAGCCTCTCTCCAGATGGGCCGAAAGTGGTCGACCTATCATGAAACCAA
GCATTGGGTTGATCAATCCATTGTGCATGGTATGCCGTGGGTCGTTGCGG
CAGATGAAATAGGGGCTGACTGGGAAGGCCTGCCTGGGGGCATTCCTCCT
GCGAGTGCTGGAAAGCCAAATATGAGCTTTCGCGCTGTCCTCTGTTGGGG
TAACATCATGGCCGGAGGTGCTGGTGTTGAAGTGTTTTCTGGGAGGGTGG
ATCAATCTCTCTCCAACTTTCGGGAATTTGACTCAATATGGGCAGAATTT
TCGCGCCCTCTACGGCTGTTTGATGAGCATAACATCCCGTTTTGGGCTAT
GCATGCTTATTCTGATATAGTCAGCCCAAAGAAAAAGCTAAACAACAATC
AGTGGATGTACGGGTTTGCCAAACGTGGTGACGTTTACGTCATCTACCAA
AGCGGTGAGATTGAACCATTGCTGAATCTTTCCGGAGTTACTGGAAAATT
CCACGTGAGATGGTTCAATCCCCGCCCAAGTTCCTCTTCGAATCTTGAGC
TCGGAAGTGTGCTAACAGTTGTTGGAGGTGGTGCCAAGGTCGAAGTTGGA
AAGCCACCGTTTGAAAGCGGTCGCGATTGGGCAATTGTTGTTTCCAGGAC
TTTTCCTCTAAGCAATACTGCCACGAAAGCGAGCAGTGTATCTCCACACG
ATCTTATCCCAGGGAGTTTAACTTTCGGTACCAATACGTCGCATTGGTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:825561..827510-

>Gchil3829.t1 ID=Gchil3829.t1|Name=Gchil3829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1950bp|location=Sequence derived from alignment at tig00000010_pilon:825561..827510- (Gracilaria chilensis NLEC103_M9 male)
ATGTGGTCCTCTACGTATCTTGTTCTCTGCTTCATTGCGTTTGCACGGGC
TGCTGAGGTCTCTCCAGCGAAACCTGCGCGATGGGAGCTTGTTACAATTG
ACTTTGAAGGCCCGCGCACCAGTGAAGTCGCTACACCAAACCCCTTCACA
AACTTTCGTCTTGATGTCACTTTCACTCACCACTCTTCCAAAGTCAAACA
TGTCATCCCTGGCTTTTATGCAGCAGATGGAAATGCCGCTCACACTTCAG
CAGAAAGCGGAAACATCTGGCGCGTGCGTTTCACACCTGCAAGAACTGGG
AAGTGGTCCTATGTCGCTTCTTTTCGCAAGGGCAATTTCATAGCAGTGAA
AGATATAGATGGCGTTCCGGCATCTTTCGATGGCGAGAGTGGGGATTTTA
CGGTAGGTGTGGGCGAATTCAAGGCACCGGATTTGCGGGCAAAGGGCAGA
CTCCAATACGTTGGTCAGAGATATTATCGTTACGCCAACGGAGAATACAA
ACTGAAACTCGGCACGAATACACCGGAAAATTTGCTCGCCTACGAGGGGT
TCGATGGGGAACCGACACCACTGTCTTTTGAGTCGCATCTGAAGGACTGG
AGGAGTGGAGACCCGACATGGGGTGACAGTGGTCGCGGCAAGGAAATGAT
TGGAGCTGTCAACTACCTCTCCAAAATGGGAGTCAACTCTTTGTTTGCCA
TTTCAATGACTGTAAAGGGCGACAGCGATGGACAAGTTCATCCATGGCGT
TCGCGATCCGACCGCATTCGATATGACGTAAGCAAGCTAGAGCAATGGGA
AATTGTTTTCGATCATGCCGAGCGAAAGGGAATCTCACTCAATTTGGCTT
TTTGCGAGACTGAGAACGAAGCCATTTTCGAACATGAAGAGAAGATTTCA
AAACAAACTGGCTTCGCTTTATCAAGGAAAGTTTACTACAGAGAGATCAT
AGCTCGTTTCTCGCACCATCTCGGATTCGCTACTATAATTGGCGAAGAGA
ACGGTTGGTCGGAAGAGAAAAAAAACGGCGGGGGGTTCCCGTGGGGAGTA
GGCAATACTCACCAACAGCGAAAAATATTCTCGCGGTTTATCAGAGATAC
CGATCCCTACAAATCTCCTATTGGAGTGCACACATATCCATCACTCAAAA
ATGAAGTGTATACTCCCATGCTCGGTCCTCGGAGCGGAGTTCGCCATGAG
TCAGCCTCTCTCCAGATGGGCCGAAAGTGGTCGACCTATCATGAAACCAA
GCATTGGGTTGATCAATCCATTGTGCATGGTATGCCGTGGGTCGTTGCGG
CAGATGAAATAGGGGCTGACTGGGAAGGCCTGCCTGGGGGCATTCCTCCT
GCGAGTGCTGGAAAGCCAAATATGAGCTTTCGCGCTGTCCTCTGTTGGGG
TAACATCATGGCCGGAGGTGCTGGTGTTGAAGTGTTTTCTGGGAGGGTGG
ATCAATCTCTCTCCAACTTTCGGGAATTTGACTCAATATGGGCAGAATTT
TCGCGCCCTCTACGGCTGTTTGATGAGCATAACATCCCGTTTTGGGCTAT
GCATGCTTATTCTGATATAGTCAGCCCAAAGAAAAAGCTAAACAACAATC
AGTGGATGTACGGGTTTGCCAAACGTGGTGACGTTTACGTCATCTACCAA
AGCGGTGAGATTGAACCATTGCTGAATCTTTCCGGAGTTACTGGAAAATT
CCACGTGAGATGGTTCAATCCCCGCCCAAGTTCCTCTTCGAATCTTGAGC
TCGGAAGTGTGCTAACAGTTGTTGGAGGTGGTGCCAAGGTCGAAGTTGGA
AAGCCACCGTTTGAAAGCGGTCGCGATTGGGCAATTGTTGTTTCCAGGAC
TTTTCCTCTAAGCAATACTGCCACGAAAGCGAGCAGTGTATCTCCACACG
ATCTTATCCCAGGGAGTTTAACTTTCGGTACCAATACGTCGCATTGGTGA
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