Gchil7591.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7591.t1
Unique NameGchil7591.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length607
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2114056..2115876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9555.ENSPANP00000017464
Preferred nameNDOR1
PFAMsFAD_binding_1,Flavodoxin_1,NAD_binding_1
Max annot lvl33208|Metazoa
KEGG koko:K15014
KEGG TC2.A.57.1
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005856,GO:0008150,GO:0008152,GO:0008219,GO:0009987,GO:0010033,GO:0010181,GO:0016491,GO:0032553,GO:0035690,GO:0036094,GO:0036245,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045111,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071310,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901654,GO:1901655,GO:1901700,GO:1901701
Evalue2.04e-113
EggNOG OGsCOG0369@1|root,KOG1159@2759|Eukaryota,38DM1@33154|Opisthokonta,3BE84@33208|Metazoa,3CRQ3@33213|Bilateria,489XM@7711|Chordata,48VQ1@7742|Vertebrata,3JDBG@40674|Mammalia,35JH4@314146|Euarchontoglires,4MHXK@9443|Primates,363J2@314294|Cercopithecoidea
DescriptionComponent of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Transfers electrons from NADPH to the Fe S cluster of CIAPIN1
COG categoryC
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7591Gchil7591Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2114056..2115876 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7591.t1.stop1Gchil7591.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2114056..2114058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7591.t1.CDS1Gchil7591.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2114056..2115876 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7591.t1.exon1Gchil7591.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2114056..2115876 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7591.t1.start1Gchil7591.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2115874..2115876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7591.t1Gchil7591.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2114056..2115876 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7591.t1 ID=Gchil7591.t1|Name=Gchil7591.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=607bp
MPPALIKCHVLYATATGTAEDVSQQLAQQLVHRGAHLESFSAIDEYPLAN
LPNDANRGHKFIFIVSTCGDGHVPITMRNFWAFIRRATLPPSILSNLQFA
IFGLGDKAYVKFNAAARKLCTRLTDLGASLITPLALGDDSEQGGYDAQLL
PWMERILDILTPNSTSIFANDFESLPRIEVLRFGLQREDAASSLKWNQGE
ARRKPSAATNPLFDSVVDRVQVLTNPDALTDDKEVLHVQLDVSGCSPETG
LLTHEPGDIIHIMPRNSASAVEAFFELTGFDGNELIDISVRPSKRQYGDF
HLNIKVPCTLMQLASAHLDLTATPRRRFFKQLAPFATLEMERGKLLHFAS
KEGTDDLTQYAYREKRTILLVLRDFPTARPPLDSLIDMIPLLRPRAFSIA
SSGEAHPGHIHICASLVKYLTPLRFMRVGVCSGFLKDLSEGDCVPIFLEK
GTSLRFNNKRPAVLIGPGTGVAPMRSYLSTRKRSSAPNVLFFGCRVADGD
FLYKDEFDVFLKDGRLTQLIAAFSRSDPSRKIYVQHRLEEHGKQMWNLIH
NKGAFVYLAGAAGAMPKAVRQTFVIIIKKFGSLTEESSELYVKRMEAEGR
LQMECW*
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spliced messenger RNA

>Gchil7591.t1 ID=Gchil7591.t1|Name=Gchil7591.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at tig00000007_pilon:2114056..2115876- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCAGCGCTCATAAAATGCCATGTTTTATACGCTACCGCCACTGG
AACCGCAGAAGATGTTTCTCAACAACTAGCTCAGCAGCTTGTACACCGCG
GTGCACATTTGGAGTCCTTCAGCGCTATTGATGAATACCCTCTCGCTAAC
CTCCCGAACGATGCAAATCGTGGTCACAAGTTCATTTTCATTGTATCAAC
ATGTGGAGACGGCCATGTTCCGATAACCATGCGCAATTTCTGGGCGTTCA
TTAGACGTGCCACCCTTCCTCCGTCAATTCTTTCGAATCTACAGTTCGCG
ATATTTGGACTTGGTGATAAAGCGTATGTCAAGTTCAACGCAGCTGCCAG
GAAGCTTTGTACGAGACTAACGGATCTTGGTGCTTCTTTAATCACCCCGC
TTGCTCTTGGTGACGACAGTGAGCAGGGTGGCTACGACGCGCAACTCTTA
CCATGGATGGAAAGGATCCTTGACATACTGACTCCTAACTCCACTTCTAT
ATTTGCAAATGACTTTGAAAGCCTCCCGCGGATCGAAGTGCTTCGCTTTG
GACTGCAGAGAGAGGACGCAGCATCGAGTCTGAAATGGAACCAAGGCGAA
GCGAGGCGAAAACCATCAGCAGCAACGAATCCGCTCTTCGATTCGGTTGT
GGATCGAGTGCAAGTCCTCACTAACCCTGATGCCCTGACTGACGACAAAG
AAGTTCTACACGTTCAACTCGACGTCTCTGGTTGCTCACCTGAAACTGGA
TTGCTCACACATGAGCCTGGGGATATCATTCATATCATGCCGCGAAACAG
CGCATCAGCTGTTGAGGCTTTCTTCGAGCTAACTGGCTTTGACGGGAATG
AACTGATCGATATTTCAGTGCGACCAAGTAAACGTCAGTACGGGGACTTT
CACTTGAACATCAAAGTGCCTTGCACTTTAATGCAATTGGCATCTGCACA
CCTTGACCTAACTGCAACGCCGCGTCGGAGATTCTTCAAGCAGCTTGCGC
CGTTTGCAACTTTGGAAATGGAACGCGGGAAACTTTTGCACTTTGCGTCA
AAGGAAGGGACAGATGATTTAACTCAGTATGCGTATCGCGAGAAACGAAC
TATTCTGTTGGTCCTGAGAGACTTCCCAACAGCCCGTCCTCCGCTTGACT
CTTTGATTGATATGATCCCGTTGCTAAGGCCGCGGGCGTTTTCGATTGCC
TCTTCCGGTGAAGCCCATCCTGGTCACATACACATCTGTGCGTCACTAGT
GAAGTATCTAACTCCTCTACGCTTTATGCGGGTTGGAGTGTGTTCAGGTT
TCTTGAAAGATTTGAGCGAAGGAGATTGCGTGCCAATCTTTCTTGAAAAG
GGAACCTCCCTAAGGTTCAACAACAAGCGACCAGCCGTTCTTATCGGTCC
TGGAACAGGCGTAGCGCCTATGAGATCTTACTTGAGCACTCGAAAAAGGT
CAAGTGCTCCCAATGTTCTTTTCTTTGGTTGCCGTGTGGCGGATGGAGAC
TTTTTGTACAAGGATGAATTTGACGTATTCCTAAAAGATGGAAGATTAAC
CCAGCTCATTGCTGCTTTTTCTCGCAGTGATCCCTCTCGAAAGATATATG
TCCAGCATAGGCTGGAAGAACACGGGAAGCAGATGTGGAACCTAATTCAT
AACAAAGGTGCATTTGTATACTTGGCCGGTGCTGCTGGAGCAATGCCCAA
AGCCGTACGGCAAACCTTCGTCATCATAATCAAAAAGTTCGGTAGTTTGA
CAGAGGAATCTTCAGAATTGTATGTCAAACGAATGGAAGCGGAAGGACGT
CTACAAATGGAGTGCTGGTGA
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protein sequence of Gchil7591.t1

>Gchil7591.t1 ID=Gchil7591.t1|Name=Gchil7591.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=607bp
MPPALIKCHVLYATATGTAEDVSQQLAQQLVHRGAHLESFSAIDEYPLAN
LPNDANRGHKFIFIVSTCGDGHVPITMRNFWAFIRRATLPPSILSNLQFA
IFGLGDKAYVKFNAAARKLCTRLTDLGASLITPLALGDDSEQGGYDAQLL
PWMERILDILTPNSTSIFANDFESLPRIEVLRFGLQREDAASSLKWNQGE
ARRKPSAATNPLFDSVVDRVQVLTNPDALTDDKEVLHVQLDVSGCSPETG
LLTHEPGDIIHIMPRNSASAVEAFFELTGFDGNELIDISVRPSKRQYGDF
HLNIKVPCTLMQLASAHLDLTATPRRRFFKQLAPFATLEMERGKLLHFAS
KEGTDDLTQYAYREKRTILLVLRDFPTARPPLDSLIDMIPLLRPRAFSIA
SSGEAHPGHIHICASLVKYLTPLRFMRVGVCSGFLKDLSEGDCVPIFLEK
GTSLRFNNKRPAVLIGPGTGVAPMRSYLSTRKRSSAPNVLFFGCRVADGD
FLYKDEFDVFLKDGRLTQLIAAFSRSDPSRKIYVQHRLEEHGKQMWNLIH
NKGAFVYLAGAAGAMPKAVRQTFVIIIKKFGSLTEESSELYVKRMEAEGR
LQMECW*
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mRNA from alignment at tig00000007_pilon:2114056..2115876-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7591.t1 ID=Gchil7591.t1|Name=Gchil7591.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at tig00000007_pilon:2114056..2115876- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCCAGCGCTCATAAAATGCCATGTTTTATACGCTACCGCCACTGG
AACCGCAGAAGATGTTTCTCAACAACTAGCTCAGCAGCTTGTACACCGCG
GTGCACATTTGGAGTCCTTCAGCGCTATTGATGAATACCCTCTCGCTAAC
CTCCCGAACGATGCAAATCGTGGTCACAAGTTCATTTTCATTGTATCAAC
ATGTGGAGACGGCCATGTTCCGATAACCATGCGCAATTTCTGGGCGTTCA
TTAGACGTGCCACCCTTCCTCCGTCAATTCTTTCGAATCTACAGTTCGCG
ATATTTGGACTTGGTGATAAAGCGTATGTCAAGTTCAACGCAGCTGCCAG
GAAGCTTTGTACGAGACTAACGGATCTTGGTGCTTCTTTAATCACCCCGC
TTGCTCTTGGTGACGACAGTGAGCAGGGTGGCTACGACGCGCAACTCTTA
CCATGGATGGAAAGGATCCTTGACATACTGACTCCTAACTCCACTTCTAT
ATTTGCAAATGACTTTGAAAGCCTCCCGCGGATCGAAGTGCTTCGCTTTG
GACTGCAGAGAGAGGACGCAGCATCGAGTCTGAAATGGAACCAAGGCGAA
GCGAGGCGAAAACCATCAGCAGCAACGAATCCGCTCTTCGATTCGGTTGT
GGATCGAGTGCAAGTCCTCACTAACCCTGATGCCCTGACTGACGACAAAG
AAGTTCTACACGTTCAACTCGACGTCTCTGGTTGCTCACCTGAAACTGGA
TTGCTCACACATGAGCCTGGGGATATCATTCATATCATGCCGCGAAACAG
CGCATCAGCTGTTGAGGCTTTCTTCGAGCTAACTGGCTTTGACGGGAATG
AACTGATCGATATTTCAGTGCGACCAAGTAAACGTCAGTACGGGGACTTT
CACTTGAACATCAAAGTGCCTTGCACTTTAATGCAATTGGCATCTGCACA
CCTTGACCTAACTGCAACGCCGCGTCGGAGATTCTTCAAGCAGCTTGCGC
CGTTTGCAACTTTGGAAATGGAACGCGGGAAACTTTTGCACTTTGCGTCA
AAGGAAGGGACAGATGATTTAACTCAGTATGCGTATCGCGAGAAACGAAC
TATTCTGTTGGTCCTGAGAGACTTCCCAACAGCCCGTCCTCCGCTTGACT
CTTTGATTGATATGATCCCGTTGCTAAGGCCGCGGGCGTTTTCGATTGCC
TCTTCCGGTGAAGCCCATCCTGGTCACATACACATCTGTGCGTCACTAGT
GAAGTATCTAACTCCTCTACGCTTTATGCGGGTTGGAGTGTGTTCAGGTT
TCTTGAAAGATTTGAGCGAAGGAGATTGCGTGCCAATCTTTCTTGAAAAG
GGAACCTCCCTAAGGTTCAACAACAAGCGACCAGCCGTTCTTATCGGTCC
TGGAACAGGCGTAGCGCCTATGAGATCTTACTTGAGCACTCGAAAAAGGT
CAAGTGCTCCCAATGTTCTTTTCTTTGGTTGCCGTGTGGCGGATGGAGAC
TTTTTGTACAAGGATGAATTTGACGTATTCCTAAAAGATGGAAGATTAAC
CCAGCTCATTGCTGCTTTTTCTCGCAGTGATCCCTCTCGAAAGATATATG
TCCAGCATAGGCTGGAAGAACACGGGAAGCAGATGTGGAACCTAATTCAT
AACAAAGGTGCATTTGTATACTTGGCCGGTGCTGCTGGAGCAATGCCCAA
AGCCGTACGGCAAACCTTCGTCATCATAATCAAAAAGTTCGGTAGTTTGA
CAGAGGAATCTTCAGAATTGTATGTCAAACGAATGGAAGCGGAAGGACGT
CTACAAATGGAGTGCTGGTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:2114056..2115876-

>Gchil7591.t1 ID=Gchil7591.t1|Name=Gchil7591.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1821bp|location=Sequence derived from alignment at tig00000007_pilon:2114056..2115876- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCCAGCGCTCATAAAATGCCATGTTTTATACGCTACCGCCACTGG
AACCGCAGAAGATGTTTCTCAACAACTAGCTCAGCAGCTTGTACACCGCG
GTGCACATTTGGAGTCCTTCAGCGCTATTGATGAATACCCTCTCGCTAAC
CTCCCGAACGATGCAAATCGTGGTCACAAGTTCATTTTCATTGTATCAAC
ATGTGGAGACGGCCATGTTCCGATAACCATGCGCAATTTCTGGGCGTTCA
TTAGACGTGCCACCCTTCCTCCGTCAATTCTTTCGAATCTACAGTTCGCG
ATATTTGGACTTGGTGATAAAGCGTATGTCAAGTTCAACGCAGCTGCCAG
GAAGCTTTGTACGAGACTAACGGATCTTGGTGCTTCTTTAATCACCCCGC
TTGCTCTTGGTGACGACAGTGAGCAGGGTGGCTACGACGCGCAACTCTTA
CCATGGATGGAAAGGATCCTTGACATACTGACTCCTAACTCCACTTCTAT
ATTTGCAAATGACTTTGAAAGCCTCCCGCGGATCGAAGTGCTTCGCTTTG
GACTGCAGAGAGAGGACGCAGCATCGAGTCTGAAATGGAACCAAGGCGAA
GCGAGGCGAAAACCATCAGCAGCAACGAATCCGCTCTTCGATTCGGTTGT
GGATCGAGTGCAAGTCCTCACTAACCCTGATGCCCTGACTGACGACAAAG
AAGTTCTACACGTTCAACTCGACGTCTCTGGTTGCTCACCTGAAACTGGA
TTGCTCACACATGAGCCTGGGGATATCATTCATATCATGCCGCGAAACAG
CGCATCAGCTGTTGAGGCTTTCTTCGAGCTAACTGGCTTTGACGGGAATG
AACTGATCGATATTTCAGTGCGACCAAGTAAACGTCAGTACGGGGACTTT
CACTTGAACATCAAAGTGCCTTGCACTTTAATGCAATTGGCATCTGCACA
CCTTGACCTAACTGCAACGCCGCGTCGGAGATTCTTCAAGCAGCTTGCGC
CGTTTGCAACTTTGGAAATGGAACGCGGGAAACTTTTGCACTTTGCGTCA
AAGGAAGGGACAGATGATTTAACTCAGTATGCGTATCGCGAGAAACGAAC
TATTCTGTTGGTCCTGAGAGACTTCCCAACAGCCCGTCCTCCGCTTGACT
CTTTGATTGATATGATCCCGTTGCTAAGGCCGCGGGCGTTTTCGATTGCC
TCTTCCGGTGAAGCCCATCCTGGTCACATACACATCTGTGCGTCACTAGT
GAAGTATCTAACTCCTCTACGCTTTATGCGGGTTGGAGTGTGTTCAGGTT
TCTTGAAAGATTTGAGCGAAGGAGATTGCGTGCCAATCTTTCTTGAAAAG
GGAACCTCCCTAAGGTTCAACAACAAGCGACCAGCCGTTCTTATCGGTCC
TGGAACAGGCGTAGCGCCTATGAGATCTTACTTGAGCACTCGAAAAAGGT
CAAGTGCTCCCAATGTTCTTTTCTTTGGTTGCCGTGTGGCGGATGGAGAC
TTTTTGTACAAGGATGAATTTGACGTATTCCTAAAAGATGGAAGATTAAC
CCAGCTCATTGCTGCTTTTTCTCGCAGTGATCCCTCTCGAAAGATATATG
TCCAGCATAGGCTGGAAGAACACGGGAAGCAGATGTGGAACCTAATTCAT
AACAAAGGTGCATTTGTATACTTGGCCGGTGCTGCTGGAGCAATGCCCAA
AGCCGTACGGCAAACCTTCGTCATCATAATCAAAAAGTTCGGTAGTTTGA
CAGAGGAATCTTCAGAATTGTATGTCAAACGAATGGAAGCGGAAGGACGT
CTACAAATGGAGTGCTGGTGA
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