Gchil3160.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3160.t1
Unique NameGchil3160.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:583430..584602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps21339
Max annot lvl2836|Bacillariophyta
Evalue2.3e-23
EggNOG OGsKOG2789@1|root,KOG2789@2759|Eukaryota,2XCPG@2836|Bacillariophyta
DescriptionUbiquitin-interacting motif.
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3160Gchil3160Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 583430..584602 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3160.t1.stop1Gchil3160.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 583430..583432 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3160.t1.CDS1Gchil3160.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 583430..584602 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3160.t1.exon1Gchil3160.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 583430..584602 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3160.t1.start1Gchil3160.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 584600..584602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3160.t1Gchil3160.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 583430..584602 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3160.t1 ID=Gchil3160.t1|Name=Gchil3160.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=391bp
MGNTSSVSLRLRRRRIDDPAALDLPFKSSGLYPTCNWDDKLVRRLILRGD
LAPRYPGEDDPSPNVREECPICMLVYPVLNQTKCCQARLCTECYLQIRPP
RHNKEPCPFCKYKRLDATCRGPRDAADLDREEMEQHNALQAIKRANANTL
CANSALALPSPPTLPSPAYSSQLVSSSSVTPAVPSSSSASSPSLVQPSVS
TSSFSPTTESSGTVSARATSSPVSDLISVPSSSLVATVSSSVSESSTSTT
DHPAQPSPEHNQQPQTCTQHRAPVFVSSFQQNATESIALETAVNDVNYVP
TPACENKHPSPVAVQRTAQQQNGQGESSDVGSNHSAHHTADHNAQTPDPL
SRQCFPSRQSATNSSLHFNEEFEEECVAMHEAIRRSLLDI*
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spliced messenger RNA

>Gchil3160.t1 ID=Gchil3160.t1|Name=Gchil3160.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00004382_pilon:583430..584602- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAACACCTCCAGCGTGTCGTTGCGGCTGCGTCGCCGTCGCATCGA
CGACCCTGCCGCGCTCGACTTGCCCTTCAAGTCCTCCGGGCTGTACCCGA
CGTGCAACTGGGACGACAAGCTGGTGCGCCGCCTCATTCTGCGCGGCGAC
TTGGCACCGCGTTATCCAGGCGAGGACGATCCCTCCCCTAACGTGCGTGA
AGAATGTCCCATTTGTATGCTCGTGTACCCCGTGCTTAACCAAACCAAAT
GCTGCCAGGCGCGCCTTTGCACCGAATGTTACCTGCAAATACGCCCTCCA
CGCCACAATAAGGAACCTTGCCCCTTTTGCAAGTACAAGCGTCTGGACGC
CACGTGCAGGGGACCTCGCGATGCCGCCGACTTGGACCGCGAGGAAATGG
AACAGCACAACGCTTTGCAGGCCATCAAACGGGCTAATGCAAACACCCTT
TGTGCCAATTCTGCTCTTGCCCTTCCATCTCCACCTACGTTGCCCTCGCC
CGCTTATTCCTCACAGCTCGTGTCGTCGTCATCAGTAACGCCTGCCGTTC
CGTCTTCGTCCTCTGCTTCGTCACCATCCCTTGTTCAACCGTCTGTTTCT
ACTTCTAGTTTCTCCCCGACAACCGAATCCTCTGGGACTGTCTCCGCGCG
CGCCACGTCGAGCCCCGTCAGCGACCTTATATCCGTACCTTCCTCCTCGC
TCGTGGCTACCGTGTCATCCTCTGTCTCCGAATCTTCCACCTCCACCACC
GACCACCCTGCACAGCCCTCCCCCGAGCACAACCAACAGCCGCAAACCTG
TACGCAACATCGTGCACCCGTTTTTGTTTCTTCCTTTCAACAAAATGCTA
CAGAATCCATCGCGCTGGAGACCGCGGTGAACGATGTCAACTACGTTCCA
ACTCCAGCATGCGAAAATAAGCACCCATCGCCCGTTGCTGTACAGCGCAC
CGCTCAGCAGCAAAACGGCCAAGGAGAAAGCAGTGATGTCGGCAGCAATC
ATTCCGCTCATCATACCGCTGATCATAATGCTCAAACGCCCGATCCCCTG
TCACGGCAATGTTTCCCCAGCAGACAATCTGCCACCAATTCTTCGCTGCA
TTTTAATGAAGAATTCGAGGAAGAATGCGTCGCAATGCACGAAGCAATTC
GCCGCTCGCTTCTCGACATTTAG
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protein sequence of Gchil3160.t1

>Gchil3160.t1 ID=Gchil3160.t1|Name=Gchil3160.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=391bp
MGNTSSVSLRLRRRRIDDPAALDLPFKSSGLYPTCNWDDKLVRRLILRGD
LAPRYPGEDDPSPNVREECPICMLVYPVLNQTKCCQARLCTECYLQIRPP
RHNKEPCPFCKYKRLDATCRGPRDAADLDREEMEQHNALQAIKRANANTL
CANSALALPSPPTLPSPAYSSQLVSSSSVTPAVPSSSSASSPSLVQPSVS
TSSFSPTTESSGTVSARATSSPVSDLISVPSSSLVATVSSSVSESSTSTT
DHPAQPSPEHNQQPQTCTQHRAPVFVSSFQQNATESIALETAVNDVNYVP
TPACENKHPSPVAVQRTAQQQNGQGESSDVGSNHSAHHTADHNAQTPDPL
SRQCFPSRQSATNSSLHFNEEFEEECVAMHEAIRRSLLDI*
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mRNA from alignment at tig00004382_pilon:583430..584602-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3160.t1 ID=Gchil3160.t1|Name=Gchil3160.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00004382_pilon:583430..584602- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAACACCTCCAGCGTGTCGTTGCGGCTGCGTCGCCGTCGCATCGA
CGACCCTGCCGCGCTCGACTTGCCCTTCAAGTCCTCCGGGCTGTACCCGA
CGTGCAACTGGGACGACAAGCTGGTGCGCCGCCTCATTCTGCGCGGCGAC
TTGGCACCGCGTTATCCAGGCGAGGACGATCCCTCCCCTAACGTGCGTGA
AGAATGTCCCATTTGTATGCTCGTGTACCCCGTGCTTAACCAAACCAAAT
GCTGCCAGGCGCGCCTTTGCACCGAATGTTACCTGCAAATACGCCCTCCA
CGCCACAATAAGGAACCTTGCCCCTTTTGCAAGTACAAGCGTCTGGACGC
CACGTGCAGGGGACCTCGCGATGCCGCCGACTTGGACCGCGAGGAAATGG
AACAGCACAACGCTTTGCAGGCCATCAAACGGGCTAATGCAAACACCCTT
TGTGCCAATTCTGCTCTTGCCCTTCCATCTCCACCTACGTTGCCCTCGCC
CGCTTATTCCTCACAGCTCGTGTCGTCGTCATCAGTAACGCCTGCCGTTC
CGTCTTCGTCCTCTGCTTCGTCACCATCCCTTGTTCAACCGTCTGTTTCT
ACTTCTAGTTTCTCCCCGACAACCGAATCCTCTGGGACTGTCTCCGCGCG
CGCCACGTCGAGCCCCGTCAGCGACCTTATATCCGTACCTTCCTCCTCGC
TCGTGGCTACCGTGTCATCCTCTGTCTCCGAATCTTCCACCTCCACCACC
GACCACCCTGCACAGCCCTCCCCCGAGCACAACCAACAGCCGCAAACCTG
TACGCAACATCGTGCACCCGTTTTTGTTTCTTCCTTTCAACAAAATGCTA
CAGAATCCATCGCGCTGGAGACCGCGGTGAACGATGTCAACTACGTTCCA
ACTCCAGCATGCGAAAATAAGCACCCATCGCCCGTTGCTGTACAGCGCAC
CGCTCAGCAGCAAAACGGCCAAGGAGAAAGCAGTGATGTCGGCAGCAATC
ATTCCGCTCATCATACCGCTGATCATAATGCTCAAACGCCCGATCCCCTG
TCACGGCAATGTTTCCCCAGCAGACAATCTGCCACCAATTCTTCGCTGCA
TTTTAATGAAGAATTCGAGGAAGAATGCGTCGCAATGCACGAAGCAATTC
GCCGCTCGCTTCTCGACATTTAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:583430..584602-

>Gchil3160.t1 ID=Gchil3160.t1|Name=Gchil3160.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00004382_pilon:583430..584602- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAACACCTCCAGCGTGTCGTTGCGGCTGCGTCGCCGTCGCATCGA
CGACCCTGCCGCGCTCGACTTGCCCTTCAAGTCCTCCGGGCTGTACCCGA
CGTGCAACTGGGACGACAAGCTGGTGCGCCGCCTCATTCTGCGCGGCGAC
TTGGCACCGCGTTATCCAGGCGAGGACGATCCCTCCCCTAACGTGCGTGA
AGAATGTCCCATTTGTATGCTCGTGTACCCCGTGCTTAACCAAACCAAAT
GCTGCCAGGCGCGCCTTTGCACCGAATGTTACCTGCAAATACGCCCTCCA
CGCCACAATAAGGAACCTTGCCCCTTTTGCAAGTACAAGCGTCTGGACGC
CACGTGCAGGGGACCTCGCGATGCCGCCGACTTGGACCGCGAGGAAATGG
AACAGCACAACGCTTTGCAGGCCATCAAACGGGCTAATGCAAACACCCTT
TGTGCCAATTCTGCTCTTGCCCTTCCATCTCCACCTACGTTGCCCTCGCC
CGCTTATTCCTCACAGCTCGTGTCGTCGTCATCAGTAACGCCTGCCGTTC
CGTCTTCGTCCTCTGCTTCGTCACCATCCCTTGTTCAACCGTCTGTTTCT
ACTTCTAGTTTCTCCCCGACAACCGAATCCTCTGGGACTGTCTCCGCGCG
CGCCACGTCGAGCCCCGTCAGCGACCTTATATCCGTACCTTCCTCCTCGC
TCGTGGCTACCGTGTCATCCTCTGTCTCCGAATCTTCCACCTCCACCACC
GACCACCCTGCACAGCCCTCCCCCGAGCACAACCAACAGCCGCAAACCTG
TACGCAACATCGTGCACCCGTTTTTGTTTCTTCCTTTCAACAAAATGCTA
CAGAATCCATCGCGCTGGAGACCGCGGTGAACGATGTCAACTACGTTCCA
ACTCCAGCATGCGAAAATAAGCACCCATCGCCCGTTGCTGTACAGCGCAC
CGCTCAGCAGCAAAACGGCCAAGGAGAAAGCAGTGATGTCGGCAGCAATC
ATTCCGCTCATCATACCGCTGATCATAATGCTCAAACGCCCGATCCCCTG
TCACGGCAATGTTTCCCCAGCAGACAATCTGCCACCAATTCTTCGCTGCA
TTTTAATGAAGAATTCGAGGAAGAATGCGTCGCAATGCACGAAGCAATTC
GCCGCTCGCTTCTCGACATTTAG
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