Gchil3238.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3238.t2
Unique NameGchil3238.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1206087..1206727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1163407.UU7_06633
Preferred namecutA
PFAMsCutA1
Max annot lvl135614|Xanthomonadales
KEGG koko:K03926
Evalue1.05e-29
EggNOG OGsCOG1324@1|root,COG1324@2|Bacteria,1N6TN@1224|Proteobacteria,1SCFM@1236|Gammaproteobacteria,1X7GP@135614|Xanthomonadales
Descriptionprotein involved in tolerance to divalent cations
COG categoryP
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3238Gchil3238Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1206087..1206727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3238.t2Gchil3238.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1206087..1206727 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3238.t2.stop1Gchil3238.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1206087..1206089 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3238.t2.CDS1Gchil3238.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1206087..1206444 -
Gchil3238.t2.CDS2Gchil3238.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1206579..1206727 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3238.t2.exon1Gchil3238.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1206087..1206444 -
Gchil3238.t2.exon2Gchil3238.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1206579..1206727 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3238.t2.intron1Gchil3238.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 1206445..1206578 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3238.t2.start1Gchil3238.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1206725..1206727 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3238.t2 ID=Gchil3238.t2|Name=Gchil3238.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=169bp
MALRDPCFVGVAQRLAAAAALRVERSSTATVANRSALQAHCANNCGCVMS
ARGVSTQSNQRTAAVVMAVSTVPDEHVAASVSRALVEERLVACVNVVRGV
SSTYRWQDKVITDSELLLLMKTRASLVHALRARLIQLHPYQVPELIVHAV
TDGNDAYLDWVRQSTARE*
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spliced messenger RNA

>Gchil3238.t2 ID=Gchil3238.t2|Name=Gchil3238.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00004382_pilon:1206087..1206727- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTGCGCGATCCGTGCTTTGTGGGTGTGGCACAGCGTCTTGCAGC
AGCGGCGGCACTGCGTGTGGAACGCTCCTCGACGGCAACCGTCGCCAATC
GCAGCGCGTTGCAAGCACATTGCGCAAACAACTGTGGTTGCGTCATGAGT
GCGCGCGGCGTGAGTACGCAGTCGAACCAACGCACGGCTGCTGTGGTGAT
GGCTGTGTCCACTGTGCCTGATGAGCACGTTGCGGCGTCAGTGTCGCGCG
CGCTGGTGGAGGAACGACTTGTGGCGTGTGTTAACGTCGTGCGCGGCGTG
AGTAGCACGTATCGGTGGCAGGATAAGGTGATTACGGATTCCGAGCTGTT
GTTACTGATGAAGACGCGCGCTTCTCTGGTACACGCGCTGCGCGCGCGTC
TCATTCAGCTTCATCCGTATCAAGTGCCCGAACTTATTGTACACGCCGTT
ACCGATGGAAACGACGCGTACTTGGACTGGGTGCGTCAATCCACCGCGCG
TGAGTAA
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protein sequence of Gchil3238.t2

>Gchil3238.t2 ID=Gchil3238.t2|Name=Gchil3238.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=169bp
MALRDPCFVGVAQRLAAAAALRVERSSTATVANRSALQAHCANNCGCVMS
ARGVSTQSNQRTAAVVMAVSTVPDEHVAASVSRALVEERLVACVNVVRGV
SSTYRWQDKVITDSELLLLMKTRASLVHALRARLIQLHPYQVPELIVHAV
TDGNDAYLDWVRQSTARE*
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mRNA from alignment at tig00004382_pilon:1206087..1206727-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3238.t2 ID=Gchil3238.t2|Name=Gchil3238.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=641bp|location=Sequence derived from alignment at tig00004382_pilon:1206087..1206727- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTGCGCGATCCGTGCTTTGTGGGTGTGGCACAGCGTCTTGCAGC
AGCGGCGGCACTGCGTGTGGAACGCTCCTCGACGGCAACCGTCGCCAATC
GCAGCGCGTTGCAAGCACATTGCGCAAACAACTGTGGTTGCGTCATGAGG
TACGCTTTCGTCGTCGTCGTCGTCGCCACGCTACTGCTAGCCACGCTGAG
GTGCGCTTGATGATGTACACTGCTTGCGTTTTTCCTCGTTCCATTCTGAC
TGACTGATTGATTTGTTGATTGATTTGCGACAGTGCGCGCGGCGTGAGTA
CGCAGTCGAACCAACGCACGGCTGCTGTGGTGATGGCTGTGTCCACTGTG
CCTGATGAGCACGTTGCGGCGTCAGTGTCGCGCGCGCTGGTGGAGGAACG
ACTTGTGGCGTGTGTTAACGTCGTGCGCGGCGTGAGTAGCACGTATCGGT
GGCAGGATAAGGTGATTACGGATTCCGAGCTGTTGTTACTGATGAAGACG
CGCGCTTCTCTGGTACACGCGCTGCGCGCGCGTCTCATTCAGCTTCATCC
GTATCAAGTGCCCGAACTTATTGTACACGCCGTTACCGATGGAAACGACG
CGTACTTGGACTGGGTGCGTCAATCCACCGCGCGTGAGTAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:1206087..1206727-

>Gchil3238.t2 ID=Gchil3238.t2|Name=Gchil3238.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=507bp|location=Sequence derived from alignment at tig00004382_pilon:1206087..1206727- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTGCGCGATCCGTGCTTTGTGGGTGTGGCACAGCGTCTTGCAGC
AGCGGCGGCACTGCGTGTGGAACGCTCCTCGACGGCAACCGTCGCCAATC
GCAGCGCGTTGCAAGCACATTGCGCAAACAACTGTGGTTGCGTCATGAGT
GCGCGCGGCGTGAGTACGCAGTCGAACCAACGCACGGCTGCTGTGGTGAT
GGCTGTGTCCACTGTGCCTGATGAGCACGTTGCGGCGTCAGTGTCGCGCG
CGCTGGTGGAGGAACGACTTGTGGCGTGTGTTAACGTCGTGCGCGGCGTG
AGTAGCACGTATCGGTGGCAGGATAAGGTGATTACGGATTCCGAGCTGTT
GTTACTGATGAAGACGCGCGCTTCTCTGGTACACGCGCTGCGCGCGCGTC
TCATTCAGCTTCATCCGTATCAAGTGCCCGAACTTATTGTACACGCCGTT
ACCGATGGAAACGACGCGTACTTGGACTGGGTGCGTCAATCCACCGCGCG
TGAGTAA
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