Gchil546.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil546.t1
Unique NameGchil546.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:62838..63332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LLR2
Preferred nameATMRK1
PFAMsPkinase_Tyr
Max annot lvl2759|Eukaryota
KEGG koko:K04424,ko:K16799
KEGG Pathwayko04010,ko04341,map04010,map04341
KEGG ModuleM00678
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004485,GO:0004672,GO:0004674,GO:0004712,GO:0004713,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009791,GO:0009987,GO:0010154,GO:0010344,GO:0016020,GO:0016301,GO:0016310,GO:0016421,GO:0016740,GO:0016772,GO:0016773,GO:0016874,GO:0016885,GO:0018108,GO:0018193,GO:0018212,GO:0019538,GO:0022414,GO:0023052,GO:0031974,GO:0032501,GO:0032502,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0140096,GO:1901564
Evalue1.56e-27
EggNOG OGsCOG0515@1|root,KOG1989@1|root,KOG0192@2759|Eukaryota,KOG1989@2759|Eukaryota
EC2.7.11.25
Descriptionclathrin-coated pit assembly
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil546Gchil546Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 62838..65288 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil546.t1.stop1Gchil546.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 62838..62840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil546.t1.CDS1Gchil546.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 62838..63332 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil546.t1.exon1Gchil546.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 62838..63332 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil546.t1.start1Gchil546.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 63330..63332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil546.t1Gchil546.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 62838..63332 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil546.t1 ID=Gchil546.t1|Name=Gchil546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=165bp
MRYLHGREPLVLHRDLKSQNILVEQQNDGTFKGTIIDFGLSKLNSAQQSL
VPGGGGLTGSLITMAPEVISGNPYLQQADVYSFGIVCWEIFCGRVPFGRS
VEPVQLMQKVAFRGERPSFERDDEIPSEIKSLIQACWHQQMEMRPHFSDI
TETLKNIMELLHFD*
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spliced messenger RNA

>Gchil546.t1 ID=Gchil546.t1|Name=Gchil546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00004380_pilon:62838..63332- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGTATTTACATGGGAGAGAACCACTTGTACTTCATCGTGACTTGAA
GTCCCAGAACATTCTTGTCGAGCAACAAAATGATGGCACTTTCAAGGGCA
CTATTATCGATTTTGGTCTTTCCAAGCTTAATTCTGCTCAGCAGTCACTT
GTTCCTGGCGGTGGAGGTCTCACCGGATCTCTGATAACCATGGCCCCGGA
AGTAATAAGCGGCAACCCATACCTGCAGCAAGCGGATGTATATAGCTTTG
GGATTGTCTGTTGGGAAATTTTCTGTGGCAGAGTCCCGTTTGGACGATCC
GTCGAACCGGTACAGCTTATGCAAAAGGTCGCGTTCAGAGGGGAAAGACC
GTCGTTTGAGCGCGACGACGAAATCCCCTCTGAGATTAAATCACTTATAC
AGGCTTGCTGGCATCAACAAATGGAAATGCGTCCGCACTTTTCTGATATC
ACGGAAACACTGAAAAACATCATGGAACTTCTCCATTTCGATTGA
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protein sequence of Gchil546.t1

>Gchil546.t1 ID=Gchil546.t1|Name=Gchil546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=165bp
MRYLHGREPLVLHRDLKSQNILVEQQNDGTFKGTIIDFGLSKLNSAQQSL
VPGGGGLTGSLITMAPEVISGNPYLQQADVYSFGIVCWEIFCGRVPFGRS
VEPVQLMQKVAFRGERPSFERDDEIPSEIKSLIQACWHQQMEMRPHFSDI
TETLKNIMELLHFD*
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mRNA from alignment at tig00004380_pilon:62838..63332-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil546.t1 ID=Gchil546.t1|Name=Gchil546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00004380_pilon:62838..63332- (Gracilaria chilensis NLEC103_M9 male)
ATGCGGTATTTACATGGGAGAGAACCACTTGTACTTCATCGTGACTTGAA
GTCCCAGAACATTCTTGTCGAGCAACAAAATGATGGCACTTTCAAGGGCA
CTATTATCGATTTTGGTCTTTCCAAGCTTAATTCTGCTCAGCAGTCACTT
GTTCCTGGCGGTGGAGGTCTCACCGGATCTCTGATAACCATGGCCCCGGA
AGTAATAAGCGGCAACCCATACCTGCAGCAAGCGGATGTATATAGCTTTG
GGATTGTCTGTTGGGAAATTTTCTGTGGCAGAGTCCCGTTTGGACGATCC
GTCGAACCGGTACAGCTTATGCAAAAGGTCGCGTTCAGAGGGGAAAGACC
GTCGTTTGAGCGCGACGACGAAATCCCCTCTGAGATTAAATCACTTATAC
AGGCTTGCTGGCATCAACAAATGGAAATGCGTCCGCACTTTTCTGATATC
ACGGAAACACTGAAAAACATCATGGAACTTCTCCATTTCGATTGA
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Coding sequence (CDS) from alignment at tig00004380_pilon:62838..63332-

>Gchil546.t1 ID=Gchil546.t1|Name=Gchil546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=495bp|location=Sequence derived from alignment at tig00004380_pilon:62838..63332- (Gracilaria chilensis NLEC103_M9 male)
ATGCGGTATTTACATGGGAGAGAACCACTTGTACTTCATCGTGACTTGAA
GTCCCAGAACATTCTTGTCGAGCAACAAAATGATGGCACTTTCAAGGGCA
CTATTATCGATTTTGGTCTTTCCAAGCTTAATTCTGCTCAGCAGTCACTT
GTTCCTGGCGGTGGAGGTCTCACCGGATCTCTGATAACCATGGCCCCGGA
AGTAATAAGCGGCAACCCATACCTGCAGCAAGCGGATGTATATAGCTTTG
GGATTGTCTGTTGGGAAATTTTCTGTGGCAGAGTCCCGTTTGGACGATCC
GTCGAACCGGTACAGCTTATGCAAAAGGTCGCGTTCAGAGGGGAAAGACC
GTCGTTTGAGCGCGACGACGAAATCCCCTCTGAGATTAAATCACTTATAC
AGGCTTGCTGGCATCAACAAATGGAAATGCGTCCGCACTTTTCTGATATC
ACGGAAACACTGAAAAACATCATGGAACTTCTCCATTTCGATTGA
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