Gchil569.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil569.t1
Unique NameGchil569.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:285408..286463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil569Gchil569Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 285408..286463 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil569.t1.start1Gchil569.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 285408..285410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil569.t1.CDS1Gchil569.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 285408..286463 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil569.t1.exon1Gchil569.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 285408..286463 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil569.t1.stop1Gchil569.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 286461..286463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil569.t1Gchil569.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 285408..286463 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil569.t1 ID=Gchil569.t1|Name=Gchil569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=352bp
MAVISSTPSCLSYAFYVRFCSLLALLLLIFNIVRLHHSAFHRTLSPVAVQ
PLSGHSVLRPVEPAREIFLQPSAVKIEGIGAVLSGLKPVLLLSQYTNARI
TMHDNFTGHGYNMSQYLQFGTPFPPWQRVPCNITFNMRKLLVRIVEQCEH
FNLSELHQLRLFDKCNSISISKYIAHPRVCLKHTQNLVRSFTKFRNIDDT
PKNHVCVLRRGGDIEHIILAGEGNKYAIDEQLTLPILHNVSRRGGKVALI
TETEHEQQLKALYKPHVFSNFDSLERVVSLLGRCRCTFVSSGSSFAAAMM
QITRPSYIVYTSSREGFSFEERWYSFEEYGPSAIDVNSAPQHVVDKCAPR
W*
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spliced messenger RNA

>Gchil569.t1 ID=Gchil569.t1|Name=Gchil569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004380_pilon:285408..286463+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTCATTTCGTCCACTCCTTCCTGTCTTTCTTACGCTTTTTACGT
CCGATTCTGTTCCCTACTTGCTTTGTTGCTGCTCATCTTCAATATTGTGC
GTTTGCATCATTCCGCCTTCCATCGAACCCTTTCTCCCGTTGCAGTGCAG
CCTCTTTCAGGACACAGCGTGCTTCGCCCTGTGGAGCCTGCGCGAGAGAT
CTTTCTGCAGCCCTCCGCCGTTAAGATTGAGGGCATCGGTGCCGTGCTGT
CCGGTTTGAAACCAGTTCTTCTTCTGTCGCAATACACCAACGCCCGTATC
ACAATGCACGACAATTTCACAGGACACGGCTATAACATGAGCCAGTACCT
CCAATTTGGCACACCGTTCCCGCCGTGGCAGCGAGTACCATGCAACATAA
CCTTCAACATGAGGAAACTACTTGTTCGAATCGTTGAGCAATGCGAGCAC
TTCAACTTGTCTGAATTGCACCAACTTCGTTTGTTTGATAAGTGCAATTC
AATCAGCATTTCCAAGTACATTGCTCACCCGAGAGTGTGTCTGAAGCACA
CGCAAAATCTCGTGCGTTCTTTCACCAAATTTCGCAACATCGATGATACA
CCAAAGAATCATGTGTGCGTGCTGCGCCGTGGGGGGGATATTGAACATAT
CATACTGGCTGGAGAGGGCAACAAGTACGCTATAGATGAACAATTGACTC
TGCCCATTCTGCACAACGTGAGCAGACGGGGCGGCAAAGTGGCTCTCATC
ACTGAAACAGAGCATGAACAACAGCTCAAGGCACTATACAAGCCGCACGT
GTTCAGTAACTTTGACTCTTTGGAACGCGTGGTGTCTTTGTTGGGGCGGT
GTCGATGTACATTTGTTTCAAGCGGAAGCTCTTTTGCGGCCGCTATGATG
CAGATTACTAGGCCTTCATATATAGTGTACACCTCCAGTCGGGAGGGCTT
TTCTTTCGAAGAGCGCTGGTATAGCTTTGAGGAGTATGGTCCCTCAGCCA
TCGACGTGAACAGTGCGCCACAACACGTCGTTGACAAATGTGCACCGCGT
TGGTAG
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protein sequence of Gchil569.t1

>Gchil569.t1 ID=Gchil569.t1|Name=Gchil569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=352bp
MAVISSTPSCLSYAFYVRFCSLLALLLLIFNIVRLHHSAFHRTLSPVAVQ
PLSGHSVLRPVEPAREIFLQPSAVKIEGIGAVLSGLKPVLLLSQYTNARI
TMHDNFTGHGYNMSQYLQFGTPFPPWQRVPCNITFNMRKLLVRIVEQCEH
FNLSELHQLRLFDKCNSISISKYIAHPRVCLKHTQNLVRSFTKFRNIDDT
PKNHVCVLRRGGDIEHIILAGEGNKYAIDEQLTLPILHNVSRRGGKVALI
TETEHEQQLKALYKPHVFSNFDSLERVVSLLGRCRCTFVSSGSSFAAAMM
QITRPSYIVYTSSREGFSFEERWYSFEEYGPSAIDVNSAPQHVVDKCAPR
W*
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mRNA from alignment at tig00004380_pilon:285408..286463+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil569.t1 ID=Gchil569.t1|Name=Gchil569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004380_pilon:285408..286463+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGTCATTTCGTCCACTCCTTCCTGTCTTTCTTACGCTTTTTACGT
CCGATTCTGTTCCCTACTTGCTTTGTTGCTGCTCATCTTCAATATTGTGC
GTTTGCATCATTCCGCCTTCCATCGAACCCTTTCTCCCGTTGCAGTGCAG
CCTCTTTCAGGACACAGCGTGCTTCGCCCTGTGGAGCCTGCGCGAGAGAT
CTTTCTGCAGCCCTCCGCCGTTAAGATTGAGGGCATCGGTGCCGTGCTGT
CCGGTTTGAAACCAGTTCTTCTTCTGTCGCAATACACCAACGCCCGTATC
ACAATGCACGACAATTTCACAGGACACGGCTATAACATGAGCCAGTACCT
CCAATTTGGCACACCGTTCCCGCCGTGGCAGCGAGTACCATGCAACATAA
CCTTCAACATGAGGAAACTACTTGTTCGAATCGTTGAGCAATGCGAGCAC
TTCAACTTGTCTGAATTGCACCAACTTCGTTTGTTTGATAAGTGCAATTC
AATCAGCATTTCCAAGTACATTGCTCACCCGAGAGTGTGTCTGAAGCACA
CGCAAAATCTCGTGCGTTCTTTCACCAAATTTCGCAACATCGATGATACA
CCAAAGAATCATGTGTGCGTGCTGCGCCGTGGGGGGGATATTGAACATAT
CATACTGGCTGGAGAGGGCAACAAGTACGCTATAGATGAACAATTGACTC
TGCCCATTCTGCACAACGTGAGCAGACGGGGCGGCAAAGTGGCTCTCATC
ACTGAAACAGAGCATGAACAACAGCTCAAGGCACTATACAAGCCGCACGT
GTTCAGTAACTTTGACTCTTTGGAACGCGTGGTGTCTTTGTTGGGGCGGT
GTCGATGTACATTTGTTTCAAGCGGAAGCTCTTTTGCGGCCGCTATGATG
CAGATTACTAGGCCTTCATATATAGTGTACACCTCCAGTCGGGAGGGCTT
TTCTTTCGAAGAGCGCTGGTATAGCTTTGAGGAGTATGGTCCCTCAGCCA
TCGACGTGAACAGTGCGCCACAACACGTCGTTGACAAATGTGCACCGCGT
TGGTAG
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Coding sequence (CDS) from alignment at tig00004380_pilon:285408..286463+

>Gchil569.t1 ID=Gchil569.t1|Name=Gchil569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00004380_pilon:285408..286463+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGTCATTTCGTCCACTCCTTCCTGTCTTTCTTACGCTTTTTACGT
CCGATTCTGTTCCCTACTTGCTTTGTTGCTGCTCATCTTCAATATTGTGC
GTTTGCATCATTCCGCCTTCCATCGAACCCTTTCTCCCGTTGCAGTGCAG
CCTCTTTCAGGACACAGCGTGCTTCGCCCTGTGGAGCCTGCGCGAGAGAT
CTTTCTGCAGCCCTCCGCCGTTAAGATTGAGGGCATCGGTGCCGTGCTGT
CCGGTTTGAAACCAGTTCTTCTTCTGTCGCAATACACCAACGCCCGTATC
ACAATGCACGACAATTTCACAGGACACGGCTATAACATGAGCCAGTACCT
CCAATTTGGCACACCGTTCCCGCCGTGGCAGCGAGTACCATGCAACATAA
CCTTCAACATGAGGAAACTACTTGTTCGAATCGTTGAGCAATGCGAGCAC
TTCAACTTGTCTGAATTGCACCAACTTCGTTTGTTTGATAAGTGCAATTC
AATCAGCATTTCCAAGTACATTGCTCACCCGAGAGTGTGTCTGAAGCACA
CGCAAAATCTCGTGCGTTCTTTCACCAAATTTCGCAACATCGATGATACA
CCAAAGAATCATGTGTGCGTGCTGCGCCGTGGGGGGGATATTGAACATAT
CATACTGGCTGGAGAGGGCAACAAGTACGCTATAGATGAACAATTGACTC
TGCCCATTCTGCACAACGTGAGCAGACGGGGCGGCAAAGTGGCTCTCATC
ACTGAAACAGAGCATGAACAACAGCTCAAGGCACTATACAAGCCGCACGT
GTTCAGTAACTTTGACTCTTTGGAACGCGTGGTGTCTTTGTTGGGGCGGT
GTCGATGTACATTTGTTTCAAGCGGAAGCTCTTTTGCGGCCGCTATGATG
CAGATTACTAGGCCTTCATATATAGTGTACACCTCCAGTCGGGAGGGCTT
TTCTTTCGAAGAGCGCTGGTATAGCTTTGAGGAGTATGGTCCCTCAGCCA
TCGACGTGAACAGTGCGCCACAACACGTCGTTGACAAATGTGCACCGCGT
TGGTAG
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