Gchil582.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil582.t1
Unique NameGchil582.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length525
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:386172..387746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil582Gchil582Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 386172..387746 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil582.t1.stop1Gchil582.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 386172..386174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil582.t1.CDS1Gchil582.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 386172..387746 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil582.t1.exon1Gchil582.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 386172..387746 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil582.t1.start1Gchil582.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 387744..387746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil582.t1Gchil582.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 386172..387746 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil582.t1 ID=Gchil582.t1|Name=Gchil582.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp
MSPAQRSSPPAHIDVATELQNALRLPRSDPQVAEWLFSGQHAPFHLNYDI
LPLSAFAEASAYVSSQSFDLLQNFTHTSPPPLTAVSSTTLFVQALSTDHV
ILGYSFTAIISPNPLIQERVPFHHLRLGRFAYSPELNLVNLCINMAPGND
ALLCVHRPSHHSRNRYFFGIPRISSQHCQLPSKLHSAFVCKNEAPSTRPY
SPRISPILPTSSQPVADHHYGHLINPHNEQHLIKGPSDYAHGVWEGNSIQ
QLPRCVLEELDQSFCFNQRQKARSQDLYHQSSTSWLSRRDIRIMKRSFHK
PPISKSKSSVLFDMSSVSLSRSPKPMRSEEEKTPKPQQPPIPDPTMSDDD
FSWCVTPEDDDTLSEGSHGGGLDSDDEHLNYRKPQDRKRRSFSTETVVSL
FEGTFEVPNAVRVFFDERTSAMSRSETYRATSKTTPLRADNLTRFRKTAA
QIYYDTLLWKSGLSRGVAQPDTSWLFKADPLVSKVGLSQCRNTPFPGPAI
KQLSLSYKPRSPSEVEEGSFPESG*
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spliced messenger RNA

>Gchil582.t1 ID=Gchil582.t1|Name=Gchil582.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1575bp|location=Sequence derived from alignment at tig00004380_pilon:386172..387746- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCCCGCTCAGCGTTCTTCACCACCAGCACACATTGACGTCGCCAC
GGAGCTGCAGAATGCTCTCCGCCTTCCCCGTTCCGACCCCCAGGTCGCAG
AGTGGCTCTTTTCCGGCCAACATGCCCCTTTCCACCTCAACTACGACATT
CTGCCTCTTTCCGCATTCGCCGAGGCCAGCGCCTATGTCTCGTCACAGTC
CTTCGACTTGCTTCAAAACTTTACACACACTTCCCCCCCGCCCCTCACAG
CCGTCTCCTCCACCACCCTGTTCGTGCAAGCTCTTTCGACAGATCACGTT
ATCCTGGGTTACTCCTTCACAGCCATCATTTCACCGAACCCCTTGATTCA
GGAAAGGGTCCCTTTCCACCACCTGCGCCTGGGGCGCTTTGCGTATTCCC
CCGAATTGAACCTTGTTAACTTATGCATCAACATGGCACCTGGAAACGAC
GCTTTACTTTGCGTACACCGCCCATCCCACCACTCGCGCAACAGGTATTT
CTTTGGGATTCCTCGTATCTCATCTCAACATTGTCAGCTTCCCTCCAAGC
TTCATTCAGCTTTTGTTTGTAAAAATGAAGCGCCCTCCACCCGCCCATAC
AGCCCGCGAATATCTCCAATTCTCCCAACTTCATCACAGCCAGTCGCCGA
TCACCATTATGGGCACCTCATTAACCCGCACAATGAACAACATCTCATAA
AGGGCCCCTCTGACTATGCGCACGGCGTATGGGAGGGAAACTCTATCCAA
CAGCTTCCTCGATGCGTTTTAGAGGAGCTTGACCAATCCTTTTGTTTCAA
TCAACGTCAAAAAGCCCGTTCACAAGATTTGTATCATCAGTCTTCTACTT
CATGGCTTTCCCGGCGTGATATTCGTATCATGAAGCGCTCTTTCCACAAA
CCTCCCATCTCGAAATCTAAGTCTTCCGTTCTCTTTGACATGAGTTCAGT
TAGTTTATCTCGCTCACCAAAACCAATGCGCTCTGAAGAAGAGAAAACGC
CAAAACCCCAGCAGCCCCCTATACCAGATCCTACAATGAGCGACGACGAT
TTTTCGTGGTGCGTCACCCCGGAAGATGATGATACCCTAAGTGAAGGGAG
TCACGGAGGTGGCCTCGATTCCGACGACGAGCACCTCAACTACCGAAAAC
CCCAAGACCGAAAACGGCGCTCATTTTCGACGGAAACAGTTGTGAGCTTA
TTTGAGGGAACGTTTGAGGTACCAAATGCTGTGCGTGTATTTTTCGATGA
AAGAACTTCAGCTATGTCTAGGTCAGAGACGTACCGTGCTACTAGTAAGA
CAACTCCATTACGCGCTGATAATCTAACCCGCTTCAGAAAAACTGCGGCC
CAGATATACTATGACACTCTGTTGTGGAAATCAGGATTGTCAAGAGGTGT
AGCACAGCCTGACACTAGCTGGTTGTTCAAAGCGGACCCACTTGTTTCAA
AAGTTGGACTCAGCCAATGCAGGAACACGCCGTTTCCTGGCCCGGCCATC
AAGCAGCTATCACTCAGTTATAAACCAAGGTCACCTTCAGAAGTTGAGGA
GGGTTCATTTCCAGAATCGGGTTAG
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protein sequence of Gchil582.t1

>Gchil582.t1 ID=Gchil582.t1|Name=Gchil582.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=525bp
MSPAQRSSPPAHIDVATELQNALRLPRSDPQVAEWLFSGQHAPFHLNYDI
LPLSAFAEASAYVSSQSFDLLQNFTHTSPPPLTAVSSTTLFVQALSTDHV
ILGYSFTAIISPNPLIQERVPFHHLRLGRFAYSPELNLVNLCINMAPGND
ALLCVHRPSHHSRNRYFFGIPRISSQHCQLPSKLHSAFVCKNEAPSTRPY
SPRISPILPTSSQPVADHHYGHLINPHNEQHLIKGPSDYAHGVWEGNSIQ
QLPRCVLEELDQSFCFNQRQKARSQDLYHQSSTSWLSRRDIRIMKRSFHK
PPISKSKSSVLFDMSSVSLSRSPKPMRSEEEKTPKPQQPPIPDPTMSDDD
FSWCVTPEDDDTLSEGSHGGGLDSDDEHLNYRKPQDRKRRSFSTETVVSL
FEGTFEVPNAVRVFFDERTSAMSRSETYRATSKTTPLRADNLTRFRKTAA
QIYYDTLLWKSGLSRGVAQPDTSWLFKADPLVSKVGLSQCRNTPFPGPAI
KQLSLSYKPRSPSEVEEGSFPESG*
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mRNA from alignment at tig00004380_pilon:386172..387746-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil582.t1 ID=Gchil582.t1|Name=Gchil582.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1575bp|location=Sequence derived from alignment at tig00004380_pilon:386172..387746- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCCCCGCTCAGCGTTCTTCACCACCAGCACACATTGACGTCGCCAC
GGAGCTGCAGAATGCTCTCCGCCTTCCCCGTTCCGACCCCCAGGTCGCAG
AGTGGCTCTTTTCCGGCCAACATGCCCCTTTCCACCTCAACTACGACATT
CTGCCTCTTTCCGCATTCGCCGAGGCCAGCGCCTATGTCTCGTCACAGTC
CTTCGACTTGCTTCAAAACTTTACACACACTTCCCCCCCGCCCCTCACAG
CCGTCTCCTCCACCACCCTGTTCGTGCAAGCTCTTTCGACAGATCACGTT
ATCCTGGGTTACTCCTTCACAGCCATCATTTCACCGAACCCCTTGATTCA
GGAAAGGGTCCCTTTCCACCACCTGCGCCTGGGGCGCTTTGCGTATTCCC
CCGAATTGAACCTTGTTAACTTATGCATCAACATGGCACCTGGAAACGAC
GCTTTACTTTGCGTACACCGCCCATCCCACCACTCGCGCAACAGGTATTT
CTTTGGGATTCCTCGTATCTCATCTCAACATTGTCAGCTTCCCTCCAAGC
TTCATTCAGCTTTTGTTTGTAAAAATGAAGCGCCCTCCACCCGCCCATAC
AGCCCGCGAATATCTCCAATTCTCCCAACTTCATCACAGCCAGTCGCCGA
TCACCATTATGGGCACCTCATTAACCCGCACAATGAACAACATCTCATAA
AGGGCCCCTCTGACTATGCGCACGGCGTATGGGAGGGAAACTCTATCCAA
CAGCTTCCTCGATGCGTTTTAGAGGAGCTTGACCAATCCTTTTGTTTCAA
TCAACGTCAAAAAGCCCGTTCACAAGATTTGTATCATCAGTCTTCTACTT
CATGGCTTTCCCGGCGTGATATTCGTATCATGAAGCGCTCTTTCCACAAA
CCTCCCATCTCGAAATCTAAGTCTTCCGTTCTCTTTGACATGAGTTCAGT
TAGTTTATCTCGCTCACCAAAACCAATGCGCTCTGAAGAAGAGAAAACGC
CAAAACCCCAGCAGCCCCCTATACCAGATCCTACAATGAGCGACGACGAT
TTTTCGTGGTGCGTCACCCCGGAAGATGATGATACCCTAAGTGAAGGGAG
TCACGGAGGTGGCCTCGATTCCGACGACGAGCACCTCAACTACCGAAAAC
CCCAAGACCGAAAACGGCGCTCATTTTCGACGGAAACAGTTGTGAGCTTA
TTTGAGGGAACGTTTGAGGTACCAAATGCTGTGCGTGTATTTTTCGATGA
AAGAACTTCAGCTATGTCTAGGTCAGAGACGTACCGTGCTACTAGTAAGA
CAACTCCATTACGCGCTGATAATCTAACCCGCTTCAGAAAAACTGCGGCC
CAGATATACTATGACACTCTGTTGTGGAAATCAGGATTGTCAAGAGGTGT
AGCACAGCCTGACACTAGCTGGTTGTTCAAAGCGGACCCACTTGTTTCAA
AAGTTGGACTCAGCCAATGCAGGAACACGCCGTTTCCTGGCCCGGCCATC
AAGCAGCTATCACTCAGTTATAAACCAAGGTCACCTTCAGAAGTTGAGGA
GGGTTCATTTCCAGAATCGGGTTAG
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Coding sequence (CDS) from alignment at tig00004380_pilon:386172..387746-

>Gchil582.t1 ID=Gchil582.t1|Name=Gchil582.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1575bp|location=Sequence derived from alignment at tig00004380_pilon:386172..387746- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCCCCGCTCAGCGTTCTTCACCACCAGCACACATTGACGTCGCCAC
GGAGCTGCAGAATGCTCTCCGCCTTCCCCGTTCCGACCCCCAGGTCGCAG
AGTGGCTCTTTTCCGGCCAACATGCCCCTTTCCACCTCAACTACGACATT
CTGCCTCTTTCCGCATTCGCCGAGGCCAGCGCCTATGTCTCGTCACAGTC
CTTCGACTTGCTTCAAAACTTTACACACACTTCCCCCCCGCCCCTCACAG
CCGTCTCCTCCACCACCCTGTTCGTGCAAGCTCTTTCGACAGATCACGTT
ATCCTGGGTTACTCCTTCACAGCCATCATTTCACCGAACCCCTTGATTCA
GGAAAGGGTCCCTTTCCACCACCTGCGCCTGGGGCGCTTTGCGTATTCCC
CCGAATTGAACCTTGTTAACTTATGCATCAACATGGCACCTGGAAACGAC
GCTTTACTTTGCGTACACCGCCCATCCCACCACTCGCGCAACAGGTATTT
CTTTGGGATTCCTCGTATCTCATCTCAACATTGTCAGCTTCCCTCCAAGC
TTCATTCAGCTTTTGTTTGTAAAAATGAAGCGCCCTCCACCCGCCCATAC
AGCCCGCGAATATCTCCAATTCTCCCAACTTCATCACAGCCAGTCGCCGA
TCACCATTATGGGCACCTCATTAACCCGCACAATGAACAACATCTCATAA
AGGGCCCCTCTGACTATGCGCACGGCGTATGGGAGGGAAACTCTATCCAA
CAGCTTCCTCGATGCGTTTTAGAGGAGCTTGACCAATCCTTTTGTTTCAA
TCAACGTCAAAAAGCCCGTTCACAAGATTTGTATCATCAGTCTTCTACTT
CATGGCTTTCCCGGCGTGATATTCGTATCATGAAGCGCTCTTTCCACAAA
CCTCCCATCTCGAAATCTAAGTCTTCCGTTCTCTTTGACATGAGTTCAGT
TAGTTTATCTCGCTCACCAAAACCAATGCGCTCTGAAGAAGAGAAAACGC
CAAAACCCCAGCAGCCCCCTATACCAGATCCTACAATGAGCGACGACGAT
TTTTCGTGGTGCGTCACCCCGGAAGATGATGATACCCTAAGTGAAGGGAG
TCACGGAGGTGGCCTCGATTCCGACGACGAGCACCTCAACTACCGAAAAC
CCCAAGACCGAAAACGGCGCTCATTTTCGACGGAAACAGTTGTGAGCTTA
TTTGAGGGAACGTTTGAGGTACCAAATGCTGTGCGTGTATTTTTCGATGA
AAGAACTTCAGCTATGTCTAGGTCAGAGACGTACCGTGCTACTAGTAAGA
CAACTCCATTACGCGCTGATAATCTAACCCGCTTCAGAAAAACTGCGGCC
CAGATATACTATGACACTCTGTTGTGGAAATCAGGATTGTCAAGAGGTGT
AGCACAGCCTGACACTAGCTGGTTGTTCAAAGCGGACCCACTTGTTTCAA
AAGTTGGACTCAGCCAATGCAGGAACACGCCGTTTCCTGGCCCGGCCATC
AAGCAGCTATCACTCAGTTATAAACCAAGGTCACCTTCAGAAGTTGAGGA
GGGTTCATTTCCAGAATCGGGTTAG
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