Gchil3895.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3895.t1
Unique NameGchil3895.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length383
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1284549..1286012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5286.M7XQ21
Preferred nameSEC59
Max annot lvl4751|Fungi
KEGG rclassRC00002,RC00017
KEGG koko:K00902,ko:K05542
KEGG ReactionR01018
KEGG Pathwayko00510,ko01100,map00510,map01100
GOsGO:0003674,GO:0003824,GO:0004168,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0034645,GO:0036211,GO:0042175,GO:0043048,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue2.02e-11
EggNOG OGsCOG0170@1|root,KOG2468@2759|Eukaryota,38Y7A@33154|Opisthokonta,3NUCX@4751|Fungi,3UXU9@5204|Basidiomycota,2YFF7@29000|Pucciniomycotina
EC1.3.1.88,2.7.1.108
Descriptiondolichol kinase
COG categoryI
BRITEko00000,ko00001,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3895Gchil3895Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1284549..1286012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3895.t1Gchil3895.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1284549..1286012 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3895.t1.start1Gchil3895.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1284549..1284551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3895.t1.CDS1Gchil3895.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1284549..1285151 +
Gchil3895.t1.CDS2Gchil3895.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1285467..1286012 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3895.t1.exon1Gchil3895.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1284549..1285151 +
Gchil3895.t1.exon2Gchil3895.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1285467..1286012 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3895.t1.intron1Gchil3895.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1285152..1285466 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3895.t1.stop1Gchil3895.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1286010..1286012 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3895.t1 ID=Gchil3895.t1|Name=Gchil3895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=383bp
MTATIGQDRRGREQLALKVEVYASAALAIWVLTTDSTLRFTRAALLTAAV
AAHARGARCLDDGLRACADASGLAAGAMLPMALRARSAAGAAVAVGTAGG
TVAATVRGRLTWSTQLAMGTLVAATALAADCSWFEATVAAGVPLLQTVLV
RALRGVFSAGEAALAAALVGAALLLRAGDGDDVVARLERVALRAACALVA
VHFHALAAGVFVSGVRVDAALTRLAAAAALCAFLLCEVARASGHSPPPPL
TPRALLDARDSGRVVVSHVYLLLACGGAMWARRAPNVGGVLAVCVLDGVA
AVYGVSFGRTPLAHGRSLQGAVAGAVAAFGAALALRLSAPRAALACVFAA
LVEACTLQLDNLVLPLAFFAAYAAPAPAPPPV*
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spliced messenger RNA

>Gchil3895.t1 ID=Gchil3895.t1|Name=Gchil3895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000010_pilon:1284549..1286012+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCAACAATTGGACAGGACAGGCGAGGGCGCGAGCAACTGGCTCT
CAAGGTGGAAGTGTACGCGAGCGCCGCTCTGGCCATATGGGTGTTAACAA
CGGACAGCACGCTACGCTTCACGCGCGCAGCGCTATTGACAGCAGCTGTT
GCAGCGCACGCGCGCGGGGCGCGCTGCTTGGACGACGGACTGCGCGCATG
CGCAGACGCAAGCGGTCTGGCAGCCGGGGCAATGCTACCGATGGCGCTAC
GCGCGCGCAGCGCAGCCGGCGCAGCCGTGGCGGTGGGGACGGCAGGCGGC
ACGGTGGCGGCGACGGTGCGAGGTCGACTGACGTGGAGTACGCAGCTGGC
TATGGGCACATTGGTGGCCGCCACGGCGCTTGCTGCGGATTGCTCGTGGT
TTGAGGCTACGGTGGCGGCGGGCGTACCGCTGTTGCAGACGGTTTTGGTG
CGCGCGCTGCGCGGCGTGTTCTCCGCGGGCGAGGCCGCGCTCGCGGCCGC
GCTGGTCGGCGCGGCGCTGCTGCTACGCGCCGGCGACGGCGATGACGTGG
TGGCGCGGTTGGAGCGCGTGGCGCTGCGCGCGGCGTGCGCGCTGGTGgcc
gtgCATTTCCACGCGCTAGCCGCCGGCGTGTTTGTTTCCGGTGTGCGCGT
GGACGCCGCGCTGACGCGTCTAGCGGCCGCGGCTGCGCTGTGCGCGTTTC
TGCTGTGCGAGGTGGCGCGCGCCAGTGGACACTCGCCACCTCCGCCACTG
ACACCACGCGCGCTGTTGGACGCGCGCGACAGCGGGCGTGTCGTCGTGTC
GCACGTGTACCTGTTGCTGGCGTGTGGCGGCGCAATGTGGGCGCGACGTG
CGCCCAACGTGGGCGGCGTGTTGGCCGTGTGCGTGCTGGACGGCGTGGCT
GCCGTGTATGGCGTGTCGTTTGGTCGTACCCCGCTGGCACACGGTCGCTC
GTTGCAAGGCGCTGTGGCCGGCGCTGTGGCCGCTTTTGgcgctgcgctgg
cgctgcgtctgtctgccccgcgcgccgcgctcgcctgcgttttcgccgcg
ctCGTTGAGGCCTGCACGCTGCAACTGGACAACCTCGTGCTGCCGCTGGC
CTTCTTcgccgcctacgccgcccccgcccccgcccccCCTCCTGTCTGA
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protein sequence of Gchil3895.t1

>Gchil3895.t1 ID=Gchil3895.t1|Name=Gchil3895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=383bp
MTATIGQDRRGREQLALKVEVYASAALAIWVLTTDSTLRFTRAALLTAAV
AAHARGARCLDDGLRACADASGLAAGAMLPMALRARSAAGAAVAVGTAGG
TVAATVRGRLTWSTQLAMGTLVAATALAADCSWFEATVAAGVPLLQTVLV
RALRGVFSAGEAALAAALVGAALLLRAGDGDDVVARLERVALRAACALVA
VHFHALAAGVFVSGVRVDAALTRLAAAAALCAFLLCEVARASGHSPPPPL
TPRALLDARDSGRVVVSHVYLLLACGGAMWARRAPNVGGVLAVCVLDGVA
AVYGVSFGRTPLAHGRSLQGAVAGAVAAFGAALALRLSAPRAALACVFAA
LVEACTLQLDNLVLPLAFFAAYAAPAPAPPPV*
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mRNA from alignment at tig00000010_pilon:1284549..1286012+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3895.t1 ID=Gchil3895.t1|Name=Gchil3895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00000010_pilon:1284549..1286012+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGCAACAATTGGACAGGACAGGCGAGGGCGCGAGCAACTGGCTCT
CAAGGTGGAAGTGTACGCGAGCGCCGCTCTGGCCATATGGGTGTTAACAA
CGGACAGCACGCTACGCTTCACGCGCGCAGCGCTATTGACAGCAGCTGTT
GCAGCGCACGCGCGCGGGGCGCGCTGCTTGGACGACGGACTGCGCGCATG
CGCAGACGCAAGCGGTCTGGCAGCCGGGGCAATGCTACCGATGGCGCTAC
GCGCGCGCAGCGCAGCCGGCGCAGCCGTGGCGGTGGGGACGGCAGGCGGC
ACGGTGGCGGCGACGGTGCGAGGTCGACTGACGTGGAGTACGCAGCTGGC
TATGGGCACATTGGTGGCCGCCACGGCGCTTGCTGCGGATTGCTCGTGGT
TTGAGGCTACGGTGGCGGCGGGCGTACCGCTGTTGCAGACGGTTTTGGTG
CGCGCGCTGCGCGGCGTGTTCTCCGCGGGCGAGGCCGCGCTCGCGGCCGC
GCTGGTCGGCGCGGCGCTGCTGCTACGCGCCGGCGACGGCGATGACGTGG
TGGCGCGGTTGGAGCGCGTGGCGCTGCGCGCGGCGTGCGCGCTGGTGgcc
gtggtgtgcgcaacggcggcggcggcgacggcggcgacggcgacgaaggc
ggcgacgaagacggcgacgaagacggtgacgaagacggtgacgacgatag
cgatagcattggcaacaatggtggtgaGCGCGGCGTACGGCGCGGCGTGG
GGCGCGTGCGGCGGCGAACCGCTGACAGCTACGGCGCGCCTGGCAATGCG
CGGCGGCGTGCAACGCGCGCTGCTGGGCGGGTGGGCGGGCGCGTTGTGCG
GCGTGACAGCGGCCGTATGCACGCGACGCGACAACAACTCACAACACGTA
CGCCACGTTGCACGCAAGCATTTCCACGCGCTAGCCGCCGGCGTGTTTGT
TTCCGGTGTGCGCGTGGACGCCGCGCTGACGCGTCTAGCGGCCGCGGCTG
CGCTGTGCGCGTTTCTGCTGTGCGAGGTGGCGCGCGCCAGTGGACACTCG
CCACCTCCGCCACTGACACCACGCGCGCTGTTGGACGCGCGCGACAGCGG
GCGTGTCGTCGTGTCGCACGTGTACCTGTTGCTGGCGTGTGGCGGCGCAA
TGTGGGCGCGACGTGCGCCCAACGTGGGCGGCGTGTTGGCCGTGTGCGTG
CTGGACGGCGTGGCTGCCGTGTATGGCGTGTCGTTTGGTCGTACCCCGCT
GGCACACGGTCGCTCGTTGCAAGGCGCTGTGGCCGGCGCTGTGGCCGCTT
TTGgcgctgcgctggcgctgcgtctgtctgccccgcgcgccgcgctcgcc
tgcgttttcgccgcgctCGTTGAGGCCTGCACGCTGCAACTGGACAACCT
CGTGCTGCCGCTGGCCTTCTTcgccgcctacgccgcccccgcccccgccc
ccCCTCCTGTCTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1284549..1286012+

>Gchil3895.t1 ID=Gchil3895.t1|Name=Gchil3895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00000010_pilon:1284549..1286012+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGCAACAATTGGACAGGACAGGCGAGGGCGCGAGCAACTGGCTCT
CAAGGTGGAAGTGTACGCGAGCGCCGCTCTGGCCATATGGGTGTTAACAA
CGGACAGCACGCTACGCTTCACGCGCGCAGCGCTATTGACAGCAGCTGTT
GCAGCGCACGCGCGCGGGGCGCGCTGCTTGGACGACGGACTGCGCGCATG
CGCAGACGCAAGCGGTCTGGCAGCCGGGGCAATGCTACCGATGGCGCTAC
GCGCGCGCAGCGCAGCCGGCGCAGCCGTGGCGGTGGGGACGGCAGGCGGC
ACGGTGGCGGCGACGGTGCGAGGTCGACTGACGTGGAGTACGCAGCTGGC
TATGGGCACATTGGTGGCCGCCACGGCGCTTGCTGCGGATTGCTCGTGGT
TTGAGGCTACGGTGGCGGCGGGCGTACCGCTGTTGCAGACGGTTTTGGTG
CGCGCGCTGCGCGGCGTGTTCTCCGCGGGCGAGGCCGCGCTCGCGGCCGC
GCTGGTCGGCGCGGCGCTGCTGCTACGCGCCGGCGACGGCGATGACGTGG
TGGCGCGGTTGGAGCGCGTGGCGCTGCGCGCGGCGTGCGCGCTGGTGgcc
gtgCATTTCCACGCGCTAGCCGCCGGCGTGTTTGTTTCCGGTGTGCGCGT
GGACGCCGCGCTGACGCGTCTAGCGGCCGCGGCTGCGCTGTGCGCGTTTC
TGCTGTGCGAGGTGGCGCGCGCCAGTGGACACTCGCCACCTCCGCCACTG
ACACCACGCGCGCTGTTGGACGCGCGCGACAGCGGGCGTGTCGTCGTGTC
GCACGTGTACCTGTTGCTGGCGTGTGGCGGCGCAATGTGGGCGCGACGTG
CGCCCAACGTGGGCGGCGTGTTGGCCGTGTGCGTGCTGGACGGCGTGGCT
GCCGTGTATGGCGTGTCGTTTGGTCGTACCCCGCTGGCACACGGTCGCTC
GTTGCAAGGCGCTGTGGCCGGCGCTGTGGCCGCTTTTGgcgctgcgctgg
cgctgcgtctgtctgccccgcgcgccgcgctcgcctgcgttttcgccgcg
ctCGTTGAGGCCTGCACGCTGCAACTGGACAACCTCGTGCTGCCGCTGGC
CTTCTTcgccgcctacgccgcccccgcccccgcccccCCTCCTGTCTGA
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