Gchil3544.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3544.t1
Unique NameGchil3544.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length261
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1163216..1163998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708291.1
PFAMsCK_II_beta
Max annot lvl2759|Eukaryota
KEGG koko:K03115
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
Evalue9.59e-106
EggNOG OGsCOG5041@1|root,KOG3092@2759|Eukaryota
Descriptionprotein kinase regulator activity
COG categoryDKT
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3544Gchil3544Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1163216..1163998 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3544.t1.stop1Gchil3544.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1163216..1163218 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3544.t1.CDS1Gchil3544.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1163216..1163998 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3544.t1.exon1Gchil3544.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1163216..1163998 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3544.t1.start1Gchil3544.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1163996..1163998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3544.t1Gchil3544.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1163216..1163998 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3544.t1 ID=Gchil3544.t1|Name=Gchil3544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=261bp
MSKTTANADGFTSGDSIDSGASEDTTWISWFSQLKGNEFFCEVEEDFIND
DFNLTGLSAQVTYYNYALDTILDVDIPDGELDERQQELVEVSAETLYGLI
HARYILTAHGMNSMRSKFLNGAFGRCPRVFCHGQQVLPVGLSDVPRNSTV
KTFCPRCWDLYFPRSRNHNNLDGAFWGTTFPHMFLHSYTTLVPKRNPEHY
VPRIYGFKIHRSAVQVRRNRSDEDSHIDDRKFRNESHSRHYRNSSRTLSL
PTQSNRRAAS*
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spliced messenger RNA

>Gchil3544.t1 ID=Gchil3544.t1|Name=Gchil3544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00004378_pilon:1163216..1163998- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAGACCACCGCCAACGCCGACGGCTTCACCTCCGGTGACTCCAT
CGACTCGGGCGCGTCCGAGGACACCACTTGGATTTCGTGGTTCTCGCAGC
TCAAGGGCAACGAGTTCTTCTGTGAGGTCGAGGAGGACTTCATCAACGAC
GATTTTAATCTCACAGGCCTGTCCGCCCAGGTCACCTACTACAACTATGC
GCTGGACACCATCCTCGACGTCGACATCCCCGACGGCGAGCTCGACGAGC
GCCAGCAAGAGCTGGTCGAGGTCTCCGCCGAAACGCTCTACGGCCTCATC
CATGCGCGCTACATCCTCACTGCGCATGGCATGAACTCCATGCGCTCCAA
GTTTCTCAACGGCGCCTTTGGTCGCTGTCCGCGCGTCTTCTGTCATGGCC
AGCAGGTGCTGCCCGTCGGGCTCAGTGACGTGCCGCGAAACTCCACCGTC
AAAACCTTCTGTCCGCGCTGTTGGGATCTTTACTTTCCTCGATCGCGCAA
TCATAACAACTTGGACGGTGCCTTTTGGGGCACCACCTTTCCGCACATGT
TTTTGCACTCTTATACTACCTTGGTGCCCAAACGCAACCCCGAACACTAC
GTCCCTAGAATATACGGCTTCAAGATCCATCGCTCCGCCGTTCAAGTGCG
CCGCAATCGCAGCGATGAGGACAGCCACATTGACGACCGCAAGTTTAGGA
ACGAGTCCCATTCGAGACACTACCGAAACAGCTCAAGAACGCTTTCGCTG
CCCACCCAGTCCAATCGCCGAGCGGCCTCATGA
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protein sequence of Gchil3544.t1

>Gchil3544.t1 ID=Gchil3544.t1|Name=Gchil3544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=261bp
MSKTTANADGFTSGDSIDSGASEDTTWISWFSQLKGNEFFCEVEEDFIND
DFNLTGLSAQVTYYNYALDTILDVDIPDGELDERQQELVEVSAETLYGLI
HARYILTAHGMNSMRSKFLNGAFGRCPRVFCHGQQVLPVGLSDVPRNSTV
KTFCPRCWDLYFPRSRNHNNLDGAFWGTTFPHMFLHSYTTLVPKRNPEHY
VPRIYGFKIHRSAVQVRRNRSDEDSHIDDRKFRNESHSRHYRNSSRTLSL
PTQSNRRAAS*
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mRNA from alignment at tig00004378_pilon:1163216..1163998-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3544.t1 ID=Gchil3544.t1|Name=Gchil3544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00004378_pilon:1163216..1163998- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCAAGACCACCGCCAACGCCGACGGCTTCACCTCCGGTGACTCCAT
CGACTCGGGCGCGTCCGAGGACACCACTTGGATTTCGTGGTTCTCGCAGC
TCAAGGGCAACGAGTTCTTCTGTGAGGTCGAGGAGGACTTCATCAACGAC
GATTTTAATCTCACAGGCCTGTCCGCCCAGGTCACCTACTACAACTATGC
GCTGGACACCATCCTCGACGTCGACATCCCCGACGGCGAGCTCGACGAGC
GCCAGCAAGAGCTGGTCGAGGTCTCCGCCGAAACGCTCTACGGCCTCATC
CATGCGCGCTACATCCTCACTGCGCATGGCATGAACTCCATGCGCTCCAA
GTTTCTCAACGGCGCCTTTGGTCGCTGTCCGCGCGTCTTCTGTCATGGCC
AGCAGGTGCTGCCCGTCGGGCTCAGTGACGTGCCGCGAAACTCCACCGTC
AAAACCTTCTGTCCGCGCTGTTGGGATCTTTACTTTCCTCGATCGCGCAA
TCATAACAACTTGGACGGTGCCTTTTGGGGCACCACCTTTCCGCACATGT
TTTTGCACTCTTATACTACCTTGGTGCCCAAACGCAACCCCGAACACTAC
GTCCCTAGAATATACGGCTTCAAGATCCATCGCTCCGCCGTTCAAGTGCG
CCGCAATCGCAGCGATGAGGACAGCCACATTGACGACCGCAAGTTTAGGA
ACGAGTCCCATTCGAGACACTACCGAAACAGCTCAAGAACGCTTTCGCTG
CCCACCCAGTCCAATCGCCGAGCGGCCTCATGA
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Coding sequence (CDS) from alignment at tig00004378_pilon:1163216..1163998-

>Gchil3544.t1 ID=Gchil3544.t1|Name=Gchil3544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=783bp|location=Sequence derived from alignment at tig00004378_pilon:1163216..1163998- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCAAGACCACCGCCAACGCCGACGGCTTCACCTCCGGTGACTCCAT
CGACTCGGGCGCGTCCGAGGACACCACTTGGATTTCGTGGTTCTCGCAGC
TCAAGGGCAACGAGTTCTTCTGTGAGGTCGAGGAGGACTTCATCAACGAC
GATTTTAATCTCACAGGCCTGTCCGCCCAGGTCACCTACTACAACTATGC
GCTGGACACCATCCTCGACGTCGACATCCCCGACGGCGAGCTCGACGAGC
GCCAGCAAGAGCTGGTCGAGGTCTCCGCCGAAACGCTCTACGGCCTCATC
CATGCGCGCTACATCCTCACTGCGCATGGCATGAACTCCATGCGCTCCAA
GTTTCTCAACGGCGCCTTTGGTCGCTGTCCGCGCGTCTTCTGTCATGGCC
AGCAGGTGCTGCCCGTCGGGCTCAGTGACGTGCCGCGAAACTCCACCGTC
AAAACCTTCTGTCCGCGCTGTTGGGATCTTTACTTTCCTCGATCGCGCAA
TCATAACAACTTGGACGGTGCCTTTTGGGGCACCACCTTTCCGCACATGT
TTTTGCACTCTTATACTACCTTGGTGCCCAAACGCAACCCCGAACACTAC
GTCCCTAGAATATACGGCTTCAAGATCCATCGCTCCGCCGTTCAAGTGCG
CCGCAATCGCAGCGATGAGGACAGCCACATTGACGACCGCAAGTTTAGGA
ACGAGTCCCATTCGAGACACTACCGAAACAGCTCAAGAACGCTTTCGCTG
CCCACCCAGTCCAATCGCCGAGCGGCCTCATGA
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