Gchil3514.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3514.t1
Unique NameGchil3514.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:878410..879246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709191.1
Preferred namePDX3
PFAMsPNP_phzG_C,Putative_PNPOx
Max annot lvl2759|Eukaryota
KEGG rclassRC00048,RC00116
KEGG koko:K00275
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00750,ko01100,ko01120,map00750,map01100,map01120
KEGG ModuleM00124
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004733,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009443,GO:0009987,GO:0010181,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032553,GO:0034641,GO:0036094,GO:0042364,GO:0042816,GO:0042818,GO:0042819,GO:0042822,GO:0042823,GO:0043094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046184,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0055114,GO:0070013,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097164,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
Evalue2.87e-69
EggNOG OGsCOG0259@1|root,KOG2586@2759|Eukaryota
EC1.4.3.5
Descriptionpyridoxamine-phosphate oxidase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3514Gchil3514Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 878410..879246 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3514.t1.stop1Gchil3514.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 878410..878412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3514.t1.CDS1Gchil3514.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 878410..879246 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3514.t1.exon1Gchil3514.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 878410..879246 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3514.t1.start1Gchil3514.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 879244..879246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3514.t1Gchil3514.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 878410..879246 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3514.t1 ID=Gchil3514.t1|Name=Gchil3514.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=279bp
MVRVAVVAFLVPHVVRNALRPISVMTAPPPRASATTSRSASGDAKRNDNG
ALHANALTRVDQLRVSYSQQPLDEDALPMQPLPLFTTWFGDAQRAAEPEP
NAMCLSTADGHGRPSARMVLLKAFDERGFVWYSNYRSRKAHELADNPCAA
LTFWWPSLERSVRVEGNVTRVDEAQSDEYFASRPPESRLGALVSEQSTVV
STREPIERRWKHLRATFLDEHGELVRDVPRPAHWGGYRLTPLRIEFWKGR
AARLHDRIVYERPSTHGADSWTRIRLQP*
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spliced messenger RNA

>Gchil3514.t1 ID=Gchil3514.t1|Name=Gchil3514.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00004378_pilon:878410..879246- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGAGTCGCCGTCGTCGCCTTCCTCGTGCCTCACGTCGTTCGCAA
CGCACTCCGTCCCATCTCAGTCATGACCGCGCCGCCGCCGCGCGCGAGCG
CCACCACCAGTCGCAGCGCTAGCGGCGATGCCAAACGCAACGACAACGGT
GCTCTACATGCAAACGCGCTCACGCGTGTGGATCAGCTGCGCGTCAGTTA
CTCACAGCAGCCTTTGGACGAGGATGCGTTGCCAATGCAGCCGTTGCCGC
TCTTCACCACCTGGTTTGGCGACGCGCAGCGCGCAGCGGAGCCGGAACCC
AACGCCATGTGTCTATCGACGGCGGATGGGCACGGACGCCCGTCCGCGCG
CATGGTGTTGCTAAAGGCGTTTGACGAACGTGGCTTTGTGTGGTACAGTA
ACTACCGTAGTCGCAAGGCACACGAGTTGGCAGATAACCCGTGCGCAGCG
CTCACCTTCTGGTGGCCGTCGCTGGAGCGGTCGGTACGTGTGGAGGGCAA
CGTCACGCGCGTGGACGAGGCGCAGTCGGACGAGTACTTTGCGAGTCGCC
CGCCGGAGAGCCGTCTGGGCGCGCTGGTCAGTGAGCAGAGCACCGTGGTG
AGCACACGCGAGCCCATAGAACGTCGGTGGAAGCATCTACGTGCCACGTT
TCTCGACGAGCACGGCGAGCTGGTGCGGGACGTACCGCGCCCGGCCCATT
GGGGCGGCTACCGTTTGACGCCGCTGCGCATCGAGTTCTGGAAGGGGCGC
GCCGCGCGCCTGCACGATCGCATCGTGTACGAGCGCCCGTCCACGCACGG
CGCCGATTCCTGGACGCGCATCCGACTACAGCCGTAA
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protein sequence of Gchil3514.t1

>Gchil3514.t1 ID=Gchil3514.t1|Name=Gchil3514.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=279bp
MVRVAVVAFLVPHVVRNALRPISVMTAPPPRASATTSRSASGDAKRNDNG
ALHANALTRVDQLRVSYSQQPLDEDALPMQPLPLFTTWFGDAQRAAEPEP
NAMCLSTADGHGRPSARMVLLKAFDERGFVWYSNYRSRKAHELADNPCAA
LTFWWPSLERSVRVEGNVTRVDEAQSDEYFASRPPESRLGALVSEQSTVV
STREPIERRWKHLRATFLDEHGELVRDVPRPAHWGGYRLTPLRIEFWKGR
AARLHDRIVYERPSTHGADSWTRIRLQP*
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mRNA from alignment at tig00004378_pilon:878410..879246-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3514.t1 ID=Gchil3514.t1|Name=Gchil3514.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00004378_pilon:878410..879246- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCGAGTCGCCGTCGTCGCCTTCCTCGTGCCTCACGTCGTTCGCAA
CGCACTCCGTCCCATCTCAGTCATGACCGCGCCGCCGCCGCGCGCGAGCG
CCACCACCAGTCGCAGCGCTAGCGGCGATGCCAAACGCAACGACAACGGT
GCTCTACATGCAAACGCGCTCACGCGTGTGGATCAGCTGCGCGTCAGTTA
CTCACAGCAGCCTTTGGACGAGGATGCGTTGCCAATGCAGCCGTTGCCGC
TCTTCACCACCTGGTTTGGCGACGCGCAGCGCGCAGCGGAGCCGGAACCC
AACGCCATGTGTCTATCGACGGCGGATGGGCACGGACGCCCGTCCGCGCG
CATGGTGTTGCTAAAGGCGTTTGACGAACGTGGCTTTGTGTGGTACAGTA
ACTACCGTAGTCGCAAGGCACACGAGTTGGCAGATAACCCGTGCGCAGCG
CTCACCTTCTGGTGGCCGTCGCTGGAGCGGTCGGTACGTGTGGAGGGCAA
CGTCACGCGCGTGGACGAGGCGCAGTCGGACGAGTACTTTGCGAGTCGCC
CGCCGGAGAGCCGTCTGGGCGCGCTGGTCAGTGAGCAGAGCACCGTGGTG
AGCACACGCGAGCCCATAGAACGTCGGTGGAAGCATCTACGTGCCACGTT
TCTCGACGAGCACGGCGAGCTGGTGCGGGACGTACCGCGCCCGGCCCATT
GGGGCGGCTACCGTTTGACGCCGCTGCGCATCGAGTTCTGGAAGGGGCGC
GCCGCGCGCCTGCACGATCGCATCGTGTACGAGCGCCCGTCCACGCACGG
CGCCGATTCCTGGACGCGCATCCGACTACAGCCGTAA
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Coding sequence (CDS) from alignment at tig00004378_pilon:878410..879246-

>Gchil3514.t1 ID=Gchil3514.t1|Name=Gchil3514.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00004378_pilon:878410..879246- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCGAGTCGCCGTCGTCGCCTTCCTCGTGCCTCACGTCGTTCGCAA
CGCACTCCGTCCCATCTCAGTCATGACCGCGCCGCCGCCGCGCGCGAGCG
CCACCACCAGTCGCAGCGCTAGCGGCGATGCCAAACGCAACGACAACGGT
GCTCTACATGCAAACGCGCTCACGCGTGTGGATCAGCTGCGCGTCAGTTA
CTCACAGCAGCCTTTGGACGAGGATGCGTTGCCAATGCAGCCGTTGCCGC
TCTTCACCACCTGGTTTGGCGACGCGCAGCGCGCAGCGGAGCCGGAACCC
AACGCCATGTGTCTATCGACGGCGGATGGGCACGGACGCCCGTCCGCGCG
CATGGTGTTGCTAAAGGCGTTTGACGAACGTGGCTTTGTGTGGTACAGTA
ACTACCGTAGTCGCAAGGCACACGAGTTGGCAGATAACCCGTGCGCAGCG
CTCACCTTCTGGTGGCCGTCGCTGGAGCGGTCGGTACGTGTGGAGGGCAA
CGTCACGCGCGTGGACGAGGCGCAGTCGGACGAGTACTTTGCGAGTCGCC
CGCCGGAGAGCCGTCTGGGCGCGCTGGTCAGTGAGCAGAGCACCGTGGTG
AGCACACGCGAGCCCATAGAACGTCGGTGGAAGCATCTACGTGCCACGTT
TCTCGACGAGCACGGCGAGCTGGTGCGGGACGTACCGCGCCCGGCCCATT
GGGGCGGCTACCGTTTGACGCCGCTGCGCATCGAGTTCTGGAAGGGGCGC
GCCGCGCGCCTGCACGATCGCATCGTGTACGAGCGCCCGTCCACGCACGG
CGCCGATTCCTGGACGCGCATCCGACTACAGCCGTAA
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