Gchil3532.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3532.t1
Unique NameGchil3532.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:936472..937368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709078.1
Preferred nameNUP35
PFAMsNup35_RRM
Max annot lvl2759|Eukaryota
KEGG koko:K14313
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005198,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005652,GO:0005654,GO:0005886,GO:0006355,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006607,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006999,GO:0007088,GO:0007096,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009790,GO:0009792,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010564,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0031090,GO:0031323,GO:0031326,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034097,GO:0034399,GO:0034504,GO:0034613,GO:0042221,GO:0042802,GO:0042803,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0044615,GO:0045184,GO:0046907,GO:0046983,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071345,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0080090,GO:0097159,GO:1901363,GO:1901987,GO:1901990,GO:1903506,GO:1990823,GO:1990830,GO:2000112,GO:2001141
Evalue7.43e-22
EggNOG OGsKOG4285@1|root,KOG4285@2759|Eukaryota
Descriptionnuclear pore organization
COG categoryK
BRITEko00000,ko00001,ko00002,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3532Gchil3532Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 936472..937368 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3532.t1.stop1Gchil3532.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 936472..936474 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3532.t1.CDS1Gchil3532.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 936472..937368 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3532.t1.exon1Gchil3532.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 936472..937368 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3532.t1.start1Gchil3532.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 937366..937368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3532.t1Gchil3532.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 936472..937368 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3532.t1 ID=Gchil3532.t1|Name=Gchil3532.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=299bp
MFSSPKSKREEPPVRERLPNYLLSGTSLTPNHEDQPPATFSTPSKSVAQR
RFSTRSETPPIFAPRTPLTFNDRLRPDRPLEEQRTTRAFTPSSKPRTPHV
PPNKSLLDTGPPSVRVLRSPSASPAASLTPSSLSARTPTLGPQDRWITVF
GFAPAMDAQALREFRRHGEIVRTIPGKGNWVHILYRTPLQAQVALQRPWR
ILAGTETMVGAVPCTEPNVAKLADEQIEKGMLIASPGVANVSPFSNSMPL
PSASPINPLKTPSTMLRRDSHAPNATPTIIRTPQRQSGIFDFLSGLYG*
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spliced messenger RNA

>Gchil3532.t1 ID=Gchil3532.t1|Name=Gchil3532.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00004378_pilon:936472..937368- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCCTCTCCGAAATCCAAGCGAGAGGAACCCCCCGTCCGCGAGCG
CCTCCCAAACTACCTTCTTTCGGGCACGTCGTTAACACCAAACCACGAAG
ACCAACCCCCTGCCACTTTCTCCACACCGTCTAAATCAGTCGCGCAACGC
CGATTCTCAACCCGCTCAGAAACCCCTCCAATCTTCGCGCCACGCACCCC
TTTAACCTTTAACGATCGCCTCCGTCCAGATAGACCTCTAGAAGAACAGC
GCACAACTCGTGCATTCACTCCATCTTCGAAACCGAGAACGCCACACGTT
CCGCCAAACAAGTCGCTGTTGGACACCGGACCCCCAAGTGTTCGCGTATT
ACGTTCGCCCTCAGCCTCCCCCGCTGCTTCTCTTACTCCTAGCTCACTTT
CTGCTCGTACACCGACGCTTGGGCCTCAAGATCGATGGATCACTGTATTT
GGTTTTGCGCCTGCGATGGATGCGCAGGCTCTTCGAGAATTTCGCCGTCA
CGGAGAGATAGTACGCACAATTCCGGGAAAAGGAAATTGGGTGCATATAT
TATATCGAACGCCACTACAAGCTCAGGTAGCTCTTCAACGCCCCTGGAGA
ATCTTGGCTGGTACTGAGACAATGGTCGGAGCTGTGCCTTGTACAGAACC
TAACGTTGCCAAACTTGCTGATGAGCAGATTGAAAAAGGAATGCTTATTG
CATCCCCTGGCGTTGCAAATGTTAGCCCTTTTTCAAACTCTATGCCTTTG
CCGTCTGCTTCTCCTATCAATCCGCTCAAGACGCCTTCGACGATGCTCAG
AAGAGATAGCCATGCTCCGAATGCAACACCTACGATAATACGTACCCCAC
AGAGACAATCGGGCATTTTTGACTTTCTTTCCGGTCTTTATGGATAA
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protein sequence of Gchil3532.t1

>Gchil3532.t1 ID=Gchil3532.t1|Name=Gchil3532.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=299bp
MFSSPKSKREEPPVRERLPNYLLSGTSLTPNHEDQPPATFSTPSKSVAQR
RFSTRSETPPIFAPRTPLTFNDRLRPDRPLEEQRTTRAFTPSSKPRTPHV
PPNKSLLDTGPPSVRVLRSPSASPAASLTPSSLSARTPTLGPQDRWITVF
GFAPAMDAQALREFRRHGEIVRTIPGKGNWVHILYRTPLQAQVALQRPWR
ILAGTETMVGAVPCTEPNVAKLADEQIEKGMLIASPGVANVSPFSNSMPL
PSASPINPLKTPSTMLRRDSHAPNATPTIIRTPQRQSGIFDFLSGLYG*
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mRNA from alignment at tig00004378_pilon:936472..937368-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3532.t1 ID=Gchil3532.t1|Name=Gchil3532.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00004378_pilon:936472..937368- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTTCCTCTCCGAAATCCAAGCGAGAGGAACCCCCCGTCCGCGAGCG
CCTCCCAAACTACCTTCTTTCGGGCACGTCGTTAACACCAAACCACGAAG
ACCAACCCCCTGCCACTTTCTCCACACCGTCTAAATCAGTCGCGCAACGC
CGATTCTCAACCCGCTCAGAAACCCCTCCAATCTTCGCGCCACGCACCCC
TTTAACCTTTAACGATCGCCTCCGTCCAGATAGACCTCTAGAAGAACAGC
GCACAACTCGTGCATTCACTCCATCTTCGAAACCGAGAACGCCACACGTT
CCGCCAAACAAGTCGCTGTTGGACACCGGACCCCCAAGTGTTCGCGTATT
ACGTTCGCCCTCAGCCTCCCCCGCTGCTTCTCTTACTCCTAGCTCACTTT
CTGCTCGTACACCGACGCTTGGGCCTCAAGATCGATGGATCACTGTATTT
GGTTTTGCGCCTGCGATGGATGCGCAGGCTCTTCGAGAATTTCGCCGTCA
CGGAGAGATAGTACGCACAATTCCGGGAAAAGGAAATTGGGTGCATATAT
TATATCGAACGCCACTACAAGCTCAGGTAGCTCTTCAACGCCCCTGGAGA
ATCTTGGCTGGTACTGAGACAATGGTCGGAGCTGTGCCTTGTACAGAACC
TAACGTTGCCAAACTTGCTGATGAGCAGATTGAAAAAGGAATGCTTATTG
CATCCCCTGGCGTTGCAAATGTTAGCCCTTTTTCAAACTCTATGCCTTTG
CCGTCTGCTTCTCCTATCAATCCGCTCAAGACGCCTTCGACGATGCTCAG
AAGAGATAGCCATGCTCCGAATGCAACACCTACGATAATACGTACCCCAC
AGAGACAATCGGGCATTTTTGACTTTCTTTCCGGTCTTTATGGATAA
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Coding sequence (CDS) from alignment at tig00004378_pilon:936472..937368-

>Gchil3532.t1 ID=Gchil3532.t1|Name=Gchil3532.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=897bp|location=Sequence derived from alignment at tig00004378_pilon:936472..937368- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTTCCTCTCCGAAATCCAAGCGAGAGGAACCCCCCGTCCGCGAGCG
CCTCCCAAACTACCTTCTTTCGGGCACGTCGTTAACACCAAACCACGAAG
ACCAACCCCCTGCCACTTTCTCCACACCGTCTAAATCAGTCGCGCAACGC
CGATTCTCAACCCGCTCAGAAACCCCTCCAATCTTCGCGCCACGCACCCC
TTTAACCTTTAACGATCGCCTCCGTCCAGATAGACCTCTAGAAGAACAGC
GCACAACTCGTGCATTCACTCCATCTTCGAAACCGAGAACGCCACACGTT
CCGCCAAACAAGTCGCTGTTGGACACCGGACCCCCAAGTGTTCGCGTATT
ACGTTCGCCCTCAGCCTCCCCCGCTGCTTCTCTTACTCCTAGCTCACTTT
CTGCTCGTACACCGACGCTTGGGCCTCAAGATCGATGGATCACTGTATTT
GGTTTTGCGCCTGCGATGGATGCGCAGGCTCTTCGAGAATTTCGCCGTCA
CGGAGAGATAGTACGCACAATTCCGGGAAAAGGAAATTGGGTGCATATAT
TATATCGAACGCCACTACAAGCTCAGGTAGCTCTTCAACGCCCCTGGAGA
ATCTTGGCTGGTACTGAGACAATGGTCGGAGCTGTGCCTTGTACAGAACC
TAACGTTGCCAAACTTGCTGATGAGCAGATTGAAAAAGGAATGCTTATTG
CATCCCCTGGCGTTGCAAATGTTAGCCCTTTTTCAAACTCTATGCCTTTG
CCGTCTGCTTCTCCTATCAATCCGCTCAAGACGCCTTCGACGATGCTCAG
AAGAGATAGCCATGCTCCGAATGCAACACCTACGATAATACGTACCCCAC
AGAGACAATCGGGCATTTTTGACTTTCTTTCCGGTCTTTATGGATAA
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