Gchil3565.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3565.t1
Unique NameGchil3565.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1355582..1356016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707767.1
PFAMsCLP_protease
Max annot lvl2759|Eukaryota
KEGG koko:K01358,ko:K15032
KEGG Pathwayko04112,ko04212,map04112,map04212
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008270,GO:0009368,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009840,GO:0016020,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0050897,GO:0055035
Evalue7.19e-64
EggNOG OGsCOG0740@1|root,KOG0840@2759|Eukaryota
EC3.4.21.92
Descriptionserine-type endopeptidase activity
COG categoryOU
BRITEko00000,ko00001,ko01000,ko01002,ko03012,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3565Gchil3565Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1355582..1356016 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3565.t1.stop1Gchil3565.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1355582..1355584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3565.t1.CDS1Gchil3565.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1355582..1356016 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3565.t1.exon1Gchil3565.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1355582..1356016 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3565.t1.start1Gchil3565.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1356014..1356016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3565.t1Gchil3565.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1355582..1356016 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3565.t1 ID=Gchil3565.t1|Name=Gchil3565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=145bp
MYINSPGGVVTAGLAIYDTMQYIAPDIATLCVGQACSMASLLLAAGTRGE
RRALPNARVMIHQPSGGAQGQASDIAIHATEILNLRKRLNGIYVKHTGRA
LKEIETRMERDHFMSADEANQFGLIDEVVPPRSKEETSESAQSA*
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spliced messenger RNA

>Gchil3565.t1 ID=Gchil3565.t1|Name=Gchil3565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp|location=Sequence derived from alignment at tig00004378_pilon:1355582..1356016- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACATAAACTCTCCAGGTGGAGTGGTAACAGCAGGTCTCGCGATTTA
TGATACTATGCAATACATTGCCCCTGACATTGCAACACTTTGCGTTGGAC
AAGCTTGCTCCATGGCGTCACTCTTGCTTGCAGCGGGTACCCGAGGGGAA
CGCCGCGCTCTTCCCAATGCCCGAGTAATGATTCACCAGCCTAGCGGCGG
AGCCCAAGGGCAAGCTAGTGACATCGCAATTCATGCCACGGAAATTCTGA
ACTTGAGGAAACGTCTGAATGGAATTTATGTCAAACACACTGGTAGAGCT
CTGAAAGAAATTGAGACCAGAATGGAAAGAGACCACTTTATGTCCGCTGA
TGAAGCCAACCAATTTGGATTGATTGATGAGGTTGTACCTCCTCGCTCTA
AGGAAGAAACCTCTGAATCCGCTCAATCTGCATAA
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protein sequence of Gchil3565.t1

>Gchil3565.t1 ID=Gchil3565.t1|Name=Gchil3565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=145bp
MYINSPGGVVTAGLAIYDTMQYIAPDIATLCVGQACSMASLLLAAGTRGE
RRALPNARVMIHQPSGGAQGQASDIAIHATEILNLRKRLNGIYVKHTGRA
LKEIETRMERDHFMSADEANQFGLIDEVVPPRSKEETSESAQSA*
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mRNA from alignment at tig00004378_pilon:1355582..1356016-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3565.t1 ID=Gchil3565.t1|Name=Gchil3565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp|location=Sequence derived from alignment at tig00004378_pilon:1355582..1356016- (Gracilaria chilensis NLEC103_M9 male)
ATGTACATAAACTCTCCAGGTGGAGTGGTAACAGCAGGTCTCGCGATTTA
TGATACTATGCAATACATTGCCCCTGACATTGCAACACTTTGCGTTGGAC
AAGCTTGCTCCATGGCGTCACTCTTGCTTGCAGCGGGTACCCGAGGGGAA
CGCCGCGCTCTTCCCAATGCCCGAGTAATGATTCACCAGCCTAGCGGCGG
AGCCCAAGGGCAAGCTAGTGACATCGCAATTCATGCCACGGAAATTCTGA
ACTTGAGGAAACGTCTGAATGGAATTTATGTCAAACACACTGGTAGAGCT
CTGAAAGAAATTGAGACCAGAATGGAAAGAGACCACTTTATGTCCGCTGA
TGAAGCCAACCAATTTGGATTGATTGATGAGGTTGTACCTCCTCGCTCTA
AGGAAGAAACCTCTGAATCCGCTCAATCTGCATAA
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Coding sequence (CDS) from alignment at tig00004378_pilon:1355582..1356016-

>Gchil3565.t1 ID=Gchil3565.t1|Name=Gchil3565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=435bp|location=Sequence derived from alignment at tig00004378_pilon:1355582..1356016- (Gracilaria chilensis NLEC103_M9 male)
ATGTACATAAACTCTCCAGGTGGAGTGGTAACAGCAGGTCTCGCGATTTA
TGATACTATGCAATACATTGCCCCTGACATTGCAACACTTTGCGTTGGAC
AAGCTTGCTCCATGGCGTCACTCTTGCTTGCAGCGGGTACCCGAGGGGAA
CGCCGCGCTCTTCCCAATGCCCGAGTAATGATTCACCAGCCTAGCGGCGG
AGCCCAAGGGCAAGCTAGTGACATCGCAATTCATGCCACGGAAATTCTGA
ACTTGAGGAAACGTCTGAATGGAATTTATGTCAAACACACTGGTAGAGCT
CTGAAAGAAATTGAGACCAGAATGGAAAGAGACCACTTTATGTCCGCTGA
TGAAGCCAACCAATTTGGATTGATTGATGAGGTTGTACCTCCTCGCTCTA
AGGAAGAAACCTCTGAATCCGCTCAATCTGCATAA
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