Gchil3432.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3432.t1
Unique NameGchil3432.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:125651..126427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7719.XP_004226325.1
Preferred nameC14orf166
PFAMsRLL
Max annot lvl33208|Metazoa
KEGG koko:K15433
GOsGO:0000394,GO:0000993,GO:0001098,GO:0001099,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006388,GO:0006396,GO:0006399,GO:0006403,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0015630,GO:0015931,GO:0016070,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033673,GO:0034470,GO:0034641,GO:0034660,GO:0042325,GO:0042326,GO:0042802,GO:0043086,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045859,GO:0045893,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0071702,GO:0071704,GO:0071705,GO:0072669,GO:0072686,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue2.08e-21
EggNOG OGsKOG4380@1|root,KOG4380@2759|Eukaryota,39S3V@33154|Opisthokonta,3BBUC@33208|Metazoa,3D1A5@33213|Bilateria,481XA@7711|Chordata
DescriptiontRNA splicing, via endonucleolytic cleavage and ligation
COG categoryS
BRITEko00000,ko03016,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3432Gchil3432Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 125651..126427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3432.t1Gchil3432.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 125651..126427 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3432.t1.start1Gchil3432.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 125651..125653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3432.t1.CDS1Gchil3432.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 125651..125723 +
Gchil3432.t1.CDS2Gchil3432.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 125796..126427 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3432.t1.exon1Gchil3432.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 125651..125723 +
Gchil3432.t1.exon2Gchil3432.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 125796..126427 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3432.t1.intron1Gchil3432.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004378_pilon 125724..125795 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3432.t1.stop1Gchil3432.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 126425..126427 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3432.t1 ID=Gchil3432.t1|Name=Gchil3432.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=235bp
MNCSDPAIQLRLQALQCPIPPTQTDPLLTQKQICWLEDAYIRRYDIPDRR
SLRKTDYHSALNAYLRLLDAPASAHASSIAARNFLIDLAIKLHYKDHAAK
FNAPFDPWQSRRLPVVCNVSKASDVSTAIESLRNALELPHVEDVNSAHVA
AAAADAIEIVTRDALTFDTQYNIDNMPIALETSDETVHRATCAMRLLFVR
RLRALQDEINSSISAMQSITADPHTDVKLGKVGR*
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spliced messenger RNA

>Gchil3432.t1 ID=Gchil3432.t1|Name=Gchil3432.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00004378_pilon:125651..126427+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTGCTCCGACCCCGCCATCCAGCTTCGCCTACAAGCTCTACAATG
CCCAATACCGCCCACTCAGACAGATCCTCTTCTCACTCAGAAGCAAATCT
GCTGGCTTGAAGACGCCTACATTCGGCGATACGACATCCCCGACCGAAGG
TCACTTCGAAAAACAGACTATCATTCAGCACTAAATGCTTATTTACGTCT
TCTTGACGCCCCAGCCTCTGCACACGCCTCTTCAATCGCCGCCAGAAATT
TCCTGATAGATCTCGCAATCAAACTTCATTACAAAGATCATGCTGCCAAG
TTCAATGCACCCTTTGATCCGTGGCAGTCTCGTCGACTTCCGGTCGTGTG
CAACGTATCGAAAGCCTCTGATGTGTCCACTGCGATTGAATCGTTACGAA
ACGCTCTGGAGCTACCTCACGTCGAAGACGTCAATAGCGCCCATGTAGCG
GCCGCAGCTGCAGACGCTATTGAAATTGTTACGCGAGATGCATTAACATT
CGACACACAATACAACATCGACAACATGCCGATTGCACTCGAAACGAGTG
ACGAGACAGTACACCGCGCCACATGCGCCATGCGTCTGCTCTTCGTTCGT
CGATTACGAGCGCTTCAAGACGAGATAAACAGCTCTATTTCCGCCATGCA
GTCAATCACAGCCGATCCCCACACGGACGTAAAATTAGGGAAAGTAGGAC
GTTAG
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protein sequence of Gchil3432.t1

>Gchil3432.t1 ID=Gchil3432.t1|Name=Gchil3432.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=235bp
MNCSDPAIQLRLQALQCPIPPTQTDPLLTQKQICWLEDAYIRRYDIPDRR
SLRKTDYHSALNAYLRLLDAPASAHASSIAARNFLIDLAIKLHYKDHAAK
FNAPFDPWQSRRLPVVCNVSKASDVSTAIESLRNALELPHVEDVNSAHVA
AAAADAIEIVTRDALTFDTQYNIDNMPIALETSDETVHRATCAMRLLFVR
RLRALQDEINSSISAMQSITADPHTDVKLGKVGR*
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mRNA from alignment at tig00004378_pilon:125651..126427+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3432.t1 ID=Gchil3432.t1|Name=Gchil3432.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00004378_pilon:125651..126427+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATTGCTCCGACCCCGCCATCCAGCTTCGCCTACAAGCTCTACAATG
CCCAATACCGCCCACTCAGACAGGTGCGTCCCCGCCAACAACGCCGCTAC
CAATCCATTTCTAAGGAACTAACATGCCACCTATCATTCCATCAGATCCT
CTTCTCACTCAGAAGCAAATCTGCTGGCTTGAAGACGCCTACATTCGGCG
ATACGACATCCCCGACCGAAGGTCACTTCGAAAAACAGACTATCATTCAG
CACTAAATGCTTATTTACGTCTTCTTGACGCCCCAGCCTCTGCACACGCC
TCTTCAATCGCCGCCAGAAATTTCCTGATAGATCTCGCAATCAAACTTCA
TTACAAAGATCATGCTGCCAAGTTCAATGCACCCTTTGATCCGTGGCAGT
CTCGTCGACTTCCGGTCGTGTGCAACGTATCGAAAGCCTCTGATGTGTCC
ACTGCGATTGAATCGTTACGAAACGCTCTGGAGCTACCTCACGTCGAAGA
CGTCAATAGCGCCCATGTAGCGGCCGCAGCTGCAGACGCTATTGAAATTG
TTACGCGAGATGCATTAACATTCGACACACAATACAACATCGACAACATG
CCGATTGCACTCGAAACGAGTGACGAGACAGTACACCGCGCCACATGCGC
CATGCGTCTGCTCTTCGTTCGTCGATTACGAGCGCTTCAAGACGAGATAA
ACAGCTCTATTTCCGCCATGCAGTCAATCACAGCCGATCCCCACACGGAC
GTAAAATTAGGGAAAGTAGGACGTTAG
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Coding sequence (CDS) from alignment at tig00004378_pilon:125651..126427+

>Gchil3432.t1 ID=Gchil3432.t1|Name=Gchil3432.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=705bp|location=Sequence derived from alignment at tig00004378_pilon:125651..126427+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATTGCTCCGACCCCGCCATCCAGCTTCGCCTACAAGCTCTACAATG
CCCAATACCGCCCACTCAGACAGATCCTCTTCTCACTCAGAAGCAAATCT
GCTGGCTTGAAGACGCCTACATTCGGCGATACGACATCCCCGACCGAAGG
TCACTTCGAAAAACAGACTATCATTCAGCACTAAATGCTTATTTACGTCT
TCTTGACGCCCCAGCCTCTGCACACGCCTCTTCAATCGCCGCCAGAAATT
TCCTGATAGATCTCGCAATCAAACTTCATTACAAAGATCATGCTGCCAAG
TTCAATGCACCCTTTGATCCGTGGCAGTCTCGTCGACTTCCGGTCGTGTG
CAACGTATCGAAAGCCTCTGATGTGTCCACTGCGATTGAATCGTTACGAA
ACGCTCTGGAGCTACCTCACGTCGAAGACGTCAATAGCGCCCATGTAGCG
GCCGCAGCTGCAGACGCTATTGAAATTGTTACGCGAGATGCATTAACATT
CGACACACAATACAACATCGACAACATGCCGATTGCACTCGAAACGAGTG
ACGAGACAGTACACCGCGCCACATGCGCCATGCGTCTGCTCTTCGTTCGT
CGATTACGAGCGCTTCAAGACGAGATAAACAGCTCTATTTCCGCCATGCA
GTCAATCACAGCCGATCCCCACACGGACGTAAAATTAGGGAAAGTAGGAC
GTTAG
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