Gchil3428.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3428.t1
Unique NameGchil3428.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:53921..54805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LCZ8
Preferred namePANB
PFAMsPantoate_transf
Max annot lvl2759|Eukaryota
KEGG rclassRC00022,RC00200
KEGG koko:K00606
KEGG ReactionR01226
KEGG Pathwayko00770,ko01100,ko01110,map00770,map01100,map01110
KEGG ModuleM00119
Evalue1.22e-100
EggNOG OGsCOG0413@1|root,KOG2949@2759|Eukaryota
EC2.1.2.11
Description3-methyl-2-oxobutanoate hydroxymethyltransferase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3428Gchil3428Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 53921..54805 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3428.t1.stop1Gchil3428.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 53921..53923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3428.t1.CDS1Gchil3428.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 53921..54805 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3428.t1.exon1Gchil3428.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 53921..54805 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3428.t1.start1Gchil3428.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 54803..54805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3428.t1Gchil3428.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 53921..54805 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3428.t1 ID=Gchil3428.t1|Name=Gchil3428.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=295bp
MLTAYDYPTALHAERAGVDIVLVGDSLGMVVLGHRTTQAVTMDHMIHHSS
AARRAVNTALLIADLPFGTYEVSPEVGIKSAVRLIQNSAVDAVKLEGGVN
RAPVIKRIVDAGIAVMGHIGLLPQAVSREGAFRATGRTAKTAVNIVRDAQ
AVEEAGAFAVVLECVPERVASLVSGAVNIPVIGIGSGSKCDGQVLVYHDM
LGILSHPQHAKAAPKFSKAFADVGPLIDKAIDSYCKQVKARTFPSATHSP
YKISDGEYNELKRLLASNRSARCVSSSSPPSTSDGALDEPTHLY*
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spliced messenger RNA

>Gchil3428.t1 ID=Gchil3428.t1|Name=Gchil3428.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00004378_pilon:53921..54805- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGACAGCTTACGACTATCCGACCGCCCTTCATGCCGAAAGAGCTGG
AGTTGACATTGTCCTAGTGGGCGATTCTCTCGGAATGGTAGTTCTTGGGC
ACCGCACAACGCAGGCGGTCACAATGGATCACATGATTCATCACTCATCC
GCCGCCCGTAGAGCAGTCAACACCGCTCTCCTCATCGCTGATCTTCCCTT
TGGGACCTATGAAGTATCTCCCGAAGTCGGCATCAAAAGCGCTGTCCGTT
TAATTCAAAATTCAGCTGTAGACGCCGTAAAACTGGAAGGAGGTGTCAAC
CGTGCTCCCGTCATCAAAAGAATTGTAGATGCAGGCATAGCAGTCATGGG
GCACATCGGTTTGTTGCCGCAAGCGGTGAGTCGAGAGGGGGCGTTCAGAG
CAACAGGTCGCACTGCAAAAACTGCCGTAAACATTGTGAGGGACGCACAA
GCAGTGGAAGAGGCGGGTGCATTTGCTGTCGTTTTGGAGTGCGTTCCAGA
ACGCGTTGCTTCTCTCGTTTCAGGGGCAGTCAACATACCCGTCATAGGTA
TCGGTAGCGGAAGTAAATGTGATGGCCAGGTTTTGGTGTACCATGACATG
CTTGGCATTCTTTCTCACCCGCAACACGCGAAAGCTGCTCCGAAATTCTC
GAAAGCCTTTGCCGACGTTGGGCCTCTTATCGATAAGGCAATCGATAGCT
ATTGTAAGCAAGTCAAGGCGCGTACATTTCCATCTGCAACTCACTCCCCT
TACAAAATTTCTGACGGAGAGTATAATGAATTGAAACGCCTTCTGGCGTC
GAATCGATCAGCGCGTTGTGTATCATCGAGCTCGCCACCATCAACTTCTG
ATGGCGCTCTAGATGAACCAACGCACTTATACTAA
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protein sequence of Gchil3428.t1

>Gchil3428.t1 ID=Gchil3428.t1|Name=Gchil3428.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=295bp
MLTAYDYPTALHAERAGVDIVLVGDSLGMVVLGHRTTQAVTMDHMIHHSS
AARRAVNTALLIADLPFGTYEVSPEVGIKSAVRLIQNSAVDAVKLEGGVN
RAPVIKRIVDAGIAVMGHIGLLPQAVSREGAFRATGRTAKTAVNIVRDAQ
AVEEAGAFAVVLECVPERVASLVSGAVNIPVIGIGSGSKCDGQVLVYHDM
LGILSHPQHAKAAPKFSKAFADVGPLIDKAIDSYCKQVKARTFPSATHSP
YKISDGEYNELKRLLASNRSARCVSSSSPPSTSDGALDEPTHLY*
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mRNA from alignment at tig00004378_pilon:53921..54805-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3428.t1 ID=Gchil3428.t1|Name=Gchil3428.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00004378_pilon:53921..54805- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGACAGCTTACGACTATCCGACCGCCCTTCATGCCGAAAGAGCTGG
AGTTGACATTGTCCTAGTGGGCGATTCTCTCGGAATGGTAGTTCTTGGGC
ACCGCACAACGCAGGCGGTCACAATGGATCACATGATTCATCACTCATCC
GCCGCCCGTAGAGCAGTCAACACCGCTCTCCTCATCGCTGATCTTCCCTT
TGGGACCTATGAAGTATCTCCCGAAGTCGGCATCAAAAGCGCTGTCCGTT
TAATTCAAAATTCAGCTGTAGACGCCGTAAAACTGGAAGGAGGTGTCAAC
CGTGCTCCCGTCATCAAAAGAATTGTAGATGCAGGCATAGCAGTCATGGG
GCACATCGGTTTGTTGCCGCAAGCGGTGAGTCGAGAGGGGGCGTTCAGAG
CAACAGGTCGCACTGCAAAAACTGCCGTAAACATTGTGAGGGACGCACAA
GCAGTGGAAGAGGCGGGTGCATTTGCTGTCGTTTTGGAGTGCGTTCCAGA
ACGCGTTGCTTCTCTCGTTTCAGGGGCAGTCAACATACCCGTCATAGGTA
TCGGTAGCGGAAGTAAATGTGATGGCCAGGTTTTGGTGTACCATGACATG
CTTGGCATTCTTTCTCACCCGCAACACGCGAAAGCTGCTCCGAAATTCTC
GAAAGCCTTTGCCGACGTTGGGCCTCTTATCGATAAGGCAATCGATAGCT
ATTGTAAGCAAGTCAAGGCGCGTACATTTCCATCTGCAACTCACTCCCCT
TACAAAATTTCTGACGGAGAGTATAATGAATTGAAACGCCTTCTGGCGTC
GAATCGATCAGCGCGTTGTGTATCATCGAGCTCGCCACCATCAACTTCTG
ATGGCGCTCTAGATGAACCAACGCACTTATACTAA
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Coding sequence (CDS) from alignment at tig00004378_pilon:53921..54805-

>Gchil3428.t1 ID=Gchil3428.t1|Name=Gchil3428.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00004378_pilon:53921..54805- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGACAGCTTACGACTATCCGACCGCCCTTCATGCCGAAAGAGCTGG
AGTTGACATTGTCCTAGTGGGCGATTCTCTCGGAATGGTAGTTCTTGGGC
ACCGCACAACGCAGGCGGTCACAATGGATCACATGATTCATCACTCATCC
GCCGCCCGTAGAGCAGTCAACACCGCTCTCCTCATCGCTGATCTTCCCTT
TGGGACCTATGAAGTATCTCCCGAAGTCGGCATCAAAAGCGCTGTCCGTT
TAATTCAAAATTCAGCTGTAGACGCCGTAAAACTGGAAGGAGGTGTCAAC
CGTGCTCCCGTCATCAAAAGAATTGTAGATGCAGGCATAGCAGTCATGGG
GCACATCGGTTTGTTGCCGCAAGCGGTGAGTCGAGAGGGGGCGTTCAGAG
CAACAGGTCGCACTGCAAAAACTGCCGTAAACATTGTGAGGGACGCACAA
GCAGTGGAAGAGGCGGGTGCATTTGCTGTCGTTTTGGAGTGCGTTCCAGA
ACGCGTTGCTTCTCTCGTTTCAGGGGCAGTCAACATACCCGTCATAGGTA
TCGGTAGCGGAAGTAAATGTGATGGCCAGGTTTTGGTGTACCATGACATG
CTTGGCATTCTTTCTCACCCGCAACACGCGAAAGCTGCTCCGAAATTCTC
GAAAGCCTTTGCCGACGTTGGGCCTCTTATCGATAAGGCAATCGATAGCT
ATTGTAAGCAAGTCAAGGCGCGTACATTTCCATCTGCAACTCACTCCCCT
TACAAAATTTCTGACGGAGAGTATAATGAATTGAAACGCCTTCTGGCGTC
GAATCGATCAGCGCGTTGTGTATCATCGAGCTCGCCACCATCAACTTCTG
ATGGCGCTCTAGATGAACCAACGCACTTATACTAA
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