Gchil3553.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3553.t1
Unique NameGchil3553.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length259
Homology
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BLAST of Gchil3553.t1 vs. uniprot
Match: A0A2V3IX42_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX42_9FLOR)

HSP 1 Score: 90.9 bits (224), Expect = 2.230e-18
Identity = 94/263 (35.74%), Postives = 124/263 (47.15%), Query Frame = 0 
Query:   13 RSKSLPLLLLLLLSLTAGTRAVPTLRSPLSRGIFDFFTPSESTPLASASPSASIS-----------------ASVADAVEAPFDSEPEDESLFATPSASLSPLPSPTAQPVAFTPEPSAAPTETEQPTETSVAAQDAQESVPEQTPLALPTLPPRDELAGLADGDQLDQFDPELLFAPDDTQPLDQGKAVDSRSSGATGLASTASXXXXXXXXXXVAVAVLAPALLIYYGIRRRRAAGFNAMPPTHSDTSTYRAAPAQFSVGE 258
            R+ ++ L  LLLLSL+    +VPT+    SRG+FD F+ S + P    +P+AS+                   +VAD  + P D++PEDE+    P +S+                                           QTP++ P +P           D  D FD   L  PD +      KA D RSSGA+ + STAS          VAVA+LAPAL IY+GIRRRRAAGFNAMPPT SD STY+   +QFSVG+
Sbjct:    4 RALTIALTALLLLSLSQSGHSVPTVPLTASRGLFDIFSSSTAEP----TPTASVXXXXXXXXXXXXXXXXXXTAVADLSDQPLDTDPEDEA----PESSIXXXXXXXXXXXXXXXX------------XXXXXXXXXXXXXXXQTPVS-PIIPY---------DDSQDPFD--QLLIPDGSDS--DAKAADPRSSGASQVLSTASSGISVLALVAVAVAILAPALFIYWGIRRRRAAGFNAMPPTTSDNSTYQPT-SQFSVGQ 231
The following BLAST results are available for this feature:
BLAST of Gchil3553.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IX42_9FLOR2.230e-1835.74Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..140
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 17..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..16
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 205..226
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 227..258
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..204
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availableTMHMMTMhelixcoord: 203..225
NoneNo IPR availableTMHMMTMhelixcoord: 17..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1316962..1317738 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3553.t1Gchil3553.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004378_pilon 1316962..1317738 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3553.t1 ID=Gchil3553.t1|Name=Gchil3553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=259bp
MTRRTFRTAAPARSKSLPLLLLLLLSLTAGTRAVPTLRSPLSRGIFDFFT
PSESTPLASASPSASISASVADAVEAPFDSEPEDESLFATPSASLSPLPS
PTAQPVAFTPEPSAAPTETEQPTETSVAAQDAQESVPEQTPLALPTLPPR
DELAGLADGDQLDQFDPELLFAPDDTQPLDQGKAVDSRSSGATGLASTAS
TGISVVALVAVAVAVLAPALLIYYGIRRRRAAGFNAMPPTHSDTSTYRAA
PAQFSVGE*
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