Gchil6826.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6826.t1
Unique Name	Gchil6826.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	709

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004376_pilon	contig	tig00004376_pilon:90613..92739 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	192875.XP_004364943.1
PFAMs	EamA,NTP_transf_3
Max annot lvl	2759\|Eukaryota
Evalue	9.44e-36
EggNOG OGs	29D5M@1\|root,2RK9E@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6826	Gchil6826	Gracilaria chilensis NLEC103_M9 male	gene	tig00004376_pilon 90613..92739 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6826.t1.stop1	Gchil6826.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004376_pilon 90613..90615 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6826.t1.CDS1	Gchil6826.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004376_pilon 90613..92739 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6826.t1.exon1	Gchil6826.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004376_pilon 90613..92739 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6826.t1.start1	Gchil6826.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004376_pilon 92737..92739 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6826.t1	Gchil6826.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004376_pilon 90613..92739 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004376_pilon:90613..92739-
coding sequence from alignment at tig00004376_pilon:90613..92739-

mRNA sequence

>Gchil6826.t1 ID=Gchil6826.t1|Name=Gchil6826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=709bp
MAAETKPTKSSPKQTHSSRPPPRRPPRPAPIRSPPQPIPSSYGSISPFIS
PQSSLTLSQHSIQPSSFPPTAPIGLNPSPSPLARVPSRLSLRPFLQIDFD
AVAEQLSTYEGAPVTGEDLRNSFPAAHHHQQQPCSQDFSTAPTASGSFQA
SGTATPAVPLHVEFAQDHDLHSDDQGLTITIRPMEEASDVGNDINSQNEF
EIASDAAKGFAMSIPVNPEPLHPSLHTVPVDSSENIDEETPILEQQGIDL
APHSDMNISSEATATVQRHGSKHDIEEQEVVVSMPESANVGPNTGFIIPN
YDSRENLTDLLVVVPPEQEEDPNTSSKMDGMMTSTAETAKEAIEQFTSFV
PPMPSIVDIESTVEVRGSAKSATLTMNVRREVSVVGYLILAIALFSVASQ
GTAVKWLPSVDGMIAAAWLMQCQTWLMVPFALFQYLTLSDEERWQLKQPS
TMKLMAVASFSQVFWACGFFLAIDYTSMFHAWSLNNIHALSIVLVAVGRG
MLSKQPSRVVSAGELLGARIAIGGLILMQIPNLLSMDVRSTCGDMIAALS
SLGAIVYLDSCKELRQRVPLFLMMAPISALNSITFAFSSMIIAGTDFSVT
DHGALGWLQPDRLLLGLYLGGVVGFLGSVSCIAALKYLPNVVVGSVQTMM
PVVGTIVAVLMGAESLPDLWTTLGGAVLLYGVLVIADATRQSEITVVLNE
HLTADTRT*

spliced messenger RNA

>Gchil6826.t1 ID=Gchil6826.t1|Name=Gchil6826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2127bp|location=Sequence derived from alignment at tig00004376_pilon:90613..92739- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGAGACAAAGCCAACCAAGTCTTCCCCGAAGCAAACACATTC
CTCTCGACCTCCACCCAGACGACCCCCTCGTCCAGCACCCATCCGATCCC
CACCGCAACCGATTCCGTCTTCCTATGGCTCCATCTCACCCTTCATATCC
CCTCAAAGCAGCCTCACTCTTTCTCAACATTCGATTCAACCAAGCTCCTT
CCCTCCAACTGCCCCCATCGGCCTAAATCCCTCCCCGAGTCCTCTTGCTA
GAGTTCCATCGCGACTGAGTTTGCGCCCCTTTCTGCAGATCGACTTTGAC
GCTGTGGCAGAGCAACTTAGCACCTATGAGGGCGCCCCGGTTACTGGTGA
AGACTTGAGAAACTCTTTTCCTGCCGCACACCACCATCAGCAACAGCCAT
GTTCTCAAGATTTCTCCACTGCTCCCACAGCGTCCGGCAGTTTTCAAGCT
TCTGGAACTGCAACTCCGGCTGTCCCTCTGCACGTGGAATTCGCGCAAGA
TCATGACCTGCATTCTGATGACCAGGGGCTAACGATTACTATCCGTCCAA
TGGAAGAGGCGTCTGACGTGGGAAACGATATTAACTCCCAAAATGAATTC
GAAATTGCGTCAGATGCTGCCAAAGGGTTCGCCATGTCCATCCCCGTGAA
TCCCGAACCCCTACATCCATCTCTGCACACCGTACCAGTTGACTCCTCAG
AAAACATTGATGAGGAGACCCCGATACTGGAACAACAGGGAATTGATTTA
GCTCCACATAGTGACATGAACATCTCGTCAGAGGCAACTGCTACAGTACA
ACGGCACGGGAGTAAGCATGATATCGAAGAGCAAGAGGTGGTTGTCTCTA
TGCCAGAGTCTGCGAATGTTGGTCCGAATACAGGTTTCATCATTCCCAAT
TATGACTCGAGAGAAAATTTGACCGACCTCTTGGTTGTGGTTCCGCCGGA
GCAAGAAGAAGACCCAAATACATCGAGCAAGATGGACGGAATGATGACAT
CCACTGCGGAAACTGCCAAAGAAGCCATCGAACAGTTCACCAGCTTTGTG
CCACCGATGCCATCAATTGTTGACATAGAGTCGACTGTCGAAGTACGAGG
ATCTGCCAAAAGTGCGACTTTGACCATGAATGTGAGGCGTGAGGTGTCCG
TTGTTGGATATCTTATCCTGGCTATAGCATTATTCTCTGTTGCCAGCCAA
GGGACAGCAGTGAAGTGGCTACCCAGTGTCGATGGTATGATTGCGGCAGC
ATGGCTTATGCAGTGTCAAACATGGCTTATGGTGCCATTTGCCCTGTTTC
AGTACTTGACTTTGAGCGATGAAGAGCGTTGGCAATTGAAGCAACCGTCT
ACGATGAAATTGATGGCGGTGGCAAGCTTTTCGCAGGTGTTTTGGGCATG
CGGATTCTTTCTTGCGATTGACTATACCTCAATGTTCCACGCTTGGTCTC
TGAATAACATCCACGCACTATCAATTGTACTTGTCGCAGTTGGGCGCGGT
ATGCTGTCTAAACAACCGTCGCGTGTGGTTAGTGCTGGAGAACTATTGGG
CGCTCGCATTGCAATTGGCGGACTGATCCTCATGCAAATTCCAAACTTAC
TATCAATGGATGTGCGCTCCACTTGTGGTGACATGATAGCTGCATTGAGT
TCGCTTGGGGCAATCGTGTATTTGGATTCATGCAAGGAGCTTCGACAACG
CGTCCCTCTTTTTCTGATGATGGCGCCCATTTCAGCTCTGAATTCCATAA
CATTTGCTTTTTCGTCCATGATCATTGCCGGCACCGACTTTTCCGTGACG
GATCATGGAGCTCTTGGGTGGTTGCAACCTGACCGACTGCTTTTGGGATT
ATATCTCGGTGGTGTGGTTGGCTTCTTGGGAAGTGTGAGCTGCATCGCGG
CACTGAAATACCTTCCCAACGTTGTTGTAGGAAGTGTGCAAACAATGATG
CCTGTGGTGGGCACCATCGTTGCAGTTCTAATGGGCGCTGAAAGTTTACC
TGATTTGTGGACAACACTTGGCGGCGCAGTGCTCCTGTACGGTGTATTGG
TAATCGCGGATGCAACGAGACAGAGCGAGATAACAGTTGTTCTCAATGAA
CATTTAACAGCGGACACGCGGACGTAG

protein sequence of Gchil6826.t1

>Gchil6826.t1 ID=Gchil6826.t1|Name=Gchil6826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=709bp
MAAETKPTKSSPKQTHSSRPPPRRPPRPAPIRSPPQPIPSSYGSISPFIS
PQSSLTLSQHSIQPSSFPPTAPIGLNPSPSPLARVPSRLSLRPFLQIDFD
AVAEQLSTYEGAPVTGEDLRNSFPAAHHHQQQPCSQDFSTAPTASGSFQA
SGTATPAVPLHVEFAQDHDLHSDDQGLTITIRPMEEASDVGNDINSQNEF
EIASDAAKGFAMSIPVNPEPLHPSLHTVPVDSSENIDEETPILEQQGIDL
APHSDMNISSEATATVQRHGSKHDIEEQEVVVSMPESANVGPNTGFIIPN
YDSRENLTDLLVVVPPEQEEDPNTSSKMDGMMTSTAETAKEAIEQFTSFV
PPMPSIVDIESTVEVRGSAKSATLTMNVRREVSVVGYLILAIALFSVASQ
GTAVKWLPSVDGMIAAAWLMQCQTWLMVPFALFQYLTLSDEERWQLKQPS
TMKLMAVASFSQVFWACGFFLAIDYTSMFHAWSLNNIHALSIVLVAVGRG
MLSKQPSRVVSAGELLGARIAIGGLILMQIPNLLSMDVRSTCGDMIAALS
SLGAIVYLDSCKELRQRVPLFLMMAPISALNSITFAFSSMIIAGTDFSVT
DHGALGWLQPDRLLLGLYLGGVVGFLGSVSCIAALKYLPNVVVGSVQTMM
PVVGTIVAVLMGAESLPDLWTTLGGAVLLYGVLVIADATRQSEITVVLNE
HLTADTRT*

mRNA from alignment at tig00004376_pilon:90613..92739-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6826.t1 ID=Gchil6826.t1|Name=Gchil6826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2127bp|location=Sequence derived from alignment at tig00004376_pilon:90613..92739- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCGAGACAAAGCCAACCAAGTCTTCCCCGAAGCAAACACATTC
CTCTCGACCTCCACCCAGACGACCCCCTCGTCCAGCACCCATCCGATCCC
CACCGCAACCGATTCCGTCTTCCTATGGCTCCATCTCACCCTTCATATCC
CCTCAAAGCAGCCTCACTCTTTCTCAACATTCGATTCAACCAAGCTCCTT
CCCTCCAACTGCCCCCATCGGCCTAAATCCCTCCCCGAGTCCTCTTGCTA
GAGTTCCATCGCGACTGAGTTTGCGCCCCTTTCTGCAGATCGACTTTGAC
GCTGTGGCAGAGCAACTTAGCACCTATGAGGGCGCCCCGGTTACTGGTGA
AGACTTGAGAAACTCTTTTCCTGCCGCACACCACCATCAGCAACAGCCAT
GTTCTCAAGATTTCTCCACTGCTCCCACAGCGTCCGGCAGTTTTCAAGCT
TCTGGAACTGCAACTCCGGCTGTCCCTCTGCACGTGGAATTCGCGCAAGA
TCATGACCTGCATTCTGATGACCAGGGGCTAACGATTACTATCCGTCCAA
TGGAAGAGGCGTCTGACGTGGGAAACGATATTAACTCCCAAAATGAATTC
GAAATTGCGTCAGATGCTGCCAAAGGGTTCGCCATGTCCATCCCCGTGAA
TCCCGAACCCCTACATCCATCTCTGCACACCGTACCAGTTGACTCCTCAG
AAAACATTGATGAGGAGACCCCGATACTGGAACAACAGGGAATTGATTTA
GCTCCACATAGTGACATGAACATCTCGTCAGAGGCAACTGCTACAGTACA
ACGGCACGGGAGTAAGCATGATATCGAAGAGCAAGAGGTGGTTGTCTCTA
TGCCAGAGTCTGCGAATGTTGGTCCGAATACAGGTTTCATCATTCCCAAT
TATGACTCGAGAGAAAATTTGACCGACCTCTTGGTTGTGGTTCCGCCGGA
GCAAGAAGAAGACCCAAATACATCGAGCAAGATGGACGGAATGATGACAT
CCACTGCGGAAACTGCCAAAGAAGCCATCGAACAGTTCACCAGCTTTGTG
CCACCGATGCCATCAATTGTTGACATAGAGTCGACTGTCGAAGTACGAGG
ATCTGCCAAAAGTGCGACTTTGACCATGAATGTGAGGCGTGAGGTGTCCG
TTGTTGGATATCTTATCCTGGCTATAGCATTATTCTCTGTTGCCAGCCAA
GGGACAGCAGTGAAGTGGCTACCCAGTGTCGATGGTATGATTGCGGCAGC
ATGGCTTATGCAGTGTCAAACATGGCTTATGGTGCCATTTGCCCTGTTTC
AGTACTTGACTTTGAGCGATGAAGAGCGTTGGCAATTGAAGCAACCGTCT
ACGATGAAATTGATGGCGGTGGCAAGCTTTTCGCAGGTGTTTTGGGCATG
CGGATTCTTTCTTGCGATTGACTATACCTCAATGTTCCACGCTTGGTCTC
TGAATAACATCCACGCACTATCAATTGTACTTGTCGCAGTTGGGCGCGGT
ATGCTGTCTAAACAACCGTCGCGTGTGGTTAGTGCTGGAGAACTATTGGG
CGCTCGCATTGCAATTGGCGGACTGATCCTCATGCAAATTCCAAACTTAC
TATCAATGGATGTGCGCTCCACTTGTGGTGACATGATAGCTGCATTGAGT
TCGCTTGGGGCAATCGTGTATTTGGATTCATGCAAGGAGCTTCGACAACG
CGTCCCTCTTTTTCTGATGATGGCGCCCATTTCAGCTCTGAATTCCATAA
CATTTGCTTTTTCGTCCATGATCATTGCCGGCACCGACTTTTCCGTGACG
GATCATGGAGCTCTTGGGTGGTTGCAACCTGACCGACTGCTTTTGGGATT
ATATCTCGGTGGTGTGGTTGGCTTCTTGGGAAGTGTGAGCTGCATCGCGG
CACTGAAATACCTTCCCAACGTTGTTGTAGGAAGTGTGCAAACAATGATG
CCTGTGGTGGGCACCATCGTTGCAGTTCTAATGGGCGCTGAAAGTTTACC
TGATTTGTGGACAACACTTGGCGGCGCAGTGCTCCTGTACGGTGTATTGG
TAATCGCGGATGCAACGAGACAGAGCGAGATAACAGTTGTTCTCAATGAA
CATTTAACAGCGGACACGCGGACGTAG

Coding sequence (CDS) from alignment at tig00004376_pilon:90613..92739-

>Gchil6826.t1 ID=Gchil6826.t1|Name=Gchil6826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2127bp|location=Sequence derived from alignment at tig00004376_pilon:90613..92739- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCGAGACAAAGCCAACCAAGTCTTCCCCGAAGCAAACACATTC
CTCTCGACCTCCACCCAGACGACCCCCTCGTCCAGCACCCATCCGATCCC
CACCGCAACCGATTCCGTCTTCCTATGGCTCCATCTCACCCTTCATATCC
CCTCAAAGCAGCCTCACTCTTTCTCAACATTCGATTCAACCAAGCTCCTT
CCCTCCAACTGCCCCCATCGGCCTAAATCCCTCCCCGAGTCCTCTTGCTA
GAGTTCCATCGCGACTGAGTTTGCGCCCCTTTCTGCAGATCGACTTTGAC
GCTGTGGCAGAGCAACTTAGCACCTATGAGGGCGCCCCGGTTACTGGTGA
AGACTTGAGAAACTCTTTTCCTGCCGCACACCACCATCAGCAACAGCCAT
GTTCTCAAGATTTCTCCACTGCTCCCACAGCGTCCGGCAGTTTTCAAGCT
TCTGGAACTGCAACTCCGGCTGTCCCTCTGCACGTGGAATTCGCGCAAGA
TCATGACCTGCATTCTGATGACCAGGGGCTAACGATTACTATCCGTCCAA
TGGAAGAGGCGTCTGACGTGGGAAACGATATTAACTCCCAAAATGAATTC
GAAATTGCGTCAGATGCTGCCAAAGGGTTCGCCATGTCCATCCCCGTGAA
TCCCGAACCCCTACATCCATCTCTGCACACCGTACCAGTTGACTCCTCAG
AAAACATTGATGAGGAGACCCCGATACTGGAACAACAGGGAATTGATTTA
GCTCCACATAGTGACATGAACATCTCGTCAGAGGCAACTGCTACAGTACA
ACGGCACGGGAGTAAGCATGATATCGAAGAGCAAGAGGTGGTTGTCTCTA
TGCCAGAGTCTGCGAATGTTGGTCCGAATACAGGTTTCATCATTCCCAAT
TATGACTCGAGAGAAAATTTGACCGACCTCTTGGTTGTGGTTCCGCCGGA
GCAAGAAGAAGACCCAAATACATCGAGCAAGATGGACGGAATGATGACAT
CCACTGCGGAAACTGCCAAAGAAGCCATCGAACAGTTCACCAGCTTTGTG
CCACCGATGCCATCAATTGTTGACATAGAGTCGACTGTCGAAGTACGAGG
ATCTGCCAAAAGTGCGACTTTGACCATGAATGTGAGGCGTGAGGTGTCCG
TTGTTGGATATCTTATCCTGGCTATAGCATTATTCTCTGTTGCCAGCCAA
GGGACAGCAGTGAAGTGGCTACCCAGTGTCGATGGTATGATTGCGGCAGC
ATGGCTTATGCAGTGTCAAACATGGCTTATGGTGCCATTTGCCCTGTTTC
AGTACTTGACTTTGAGCGATGAAGAGCGTTGGCAATTGAAGCAACCGTCT
ACGATGAAATTGATGGCGGTGGCAAGCTTTTCGCAGGTGTTTTGGGCATG
CGGATTCTTTCTTGCGATTGACTATACCTCAATGTTCCACGCTTGGTCTC
TGAATAACATCCACGCACTATCAATTGTACTTGTCGCAGTTGGGCGCGGT
ATGCTGTCTAAACAACCGTCGCGTGTGGTTAGTGCTGGAGAACTATTGGG
CGCTCGCATTGCAATTGGCGGACTGATCCTCATGCAAATTCCAAACTTAC
TATCAATGGATGTGCGCTCCACTTGTGGTGACATGATAGCTGCATTGAGT
TCGCTTGGGGCAATCGTGTATTTGGATTCATGCAAGGAGCTTCGACAACG
CGTCCCTCTTTTTCTGATGATGGCGCCCATTTCAGCTCTGAATTCCATAA
CATTTGCTTTTTCGTCCATGATCATTGCCGGCACCGACTTTTCCGTGACG
GATCATGGAGCTCTTGGGTGGTTGCAACCTGACCGACTGCTTTTGGGATT
ATATCTCGGTGGTGTGGTTGGCTTCTTGGGAAGTGTGAGCTGCATCGCGG
CACTGAAATACCTTCCCAACGTTGTTGTAGGAAGTGTGCAAACAATGATG
CCTGTGGTGGGCACCATCGTTGCAGTTCTAATGGGCGCTGAAAGTTTACC
TGATTTGTGGACAACACTTGGCGGCGCAGTGCTCCTGTACGGTGTATTGG
TAATCGCGGATGCAACGAGACAGAGCGAGATAACAGTTGTTCTCAATGAA
CATTTAACAGCGGACACGCGGACGTAG