Gchil6852.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6852.t1
Unique Name	Gchil6852.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	594

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004376_pilon	contig	tig00004376_pilon:423959..425740 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708129.1
Preferred name	CPN60A
PFAMs	Cpn60_TCP1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04077
KEGG Pathway	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0006457,GO:0006458,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010154,GO:0016020,GO:0016043,GO:0022414,GO:0022626,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044183,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048046,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051082,GO:0061077,GO:0061458,GO:0071840,GO:1990904
Evalue	3.36e-249
EggNOG OGs	COG0459@1\|root,KOG0356@2759\|Eukaryota
Description	protein refolding
COG category	O
BRITE	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6852	Gchil6852	Gracilaria chilensis NLEC103_M9 male	gene	tig00004376_pilon 423959..425740 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6852.t1.start1	Gchil6852.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004376_pilon 423959..423961 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6852.t1.CDS1	Gchil6852.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004376_pilon 423959..425740 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6852.t1.exon1	Gchil6852.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004376_pilon 423959..425740 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6852.t1.stop1	Gchil6852.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004376_pilon 425738..425740 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6852.t1	Gchil6852.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004376_pilon 423959..425740 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004376_pilon:423959..425740+
coding sequence from alignment at tig00004376_pilon:423959..425740+

mRNA sequence

>Gchil6852.t1 ID=Gchil6852.t1|Name=Gchil6852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=594bp
MNIPSAFVSALPLASTSSFVSSTRSVSLRPRHAIRVSSPRSVPPVSMAAK
DIAFGEQSRKALIEGVDAVANAVKVTLGPKGRNVVLGRGNYSAPLSVNDG
VTVAKEISLEDPMANTGARLLQEVASKTDSKAGDGTTTSTLLCQEIVHQG
IKAVGSGRNPIALKRGIDKTVKYLVKELQNHATPSKGIEDIRAVATISSG
NDEEIGEIIATAYERIGETGSTSVEESQSLGNSVEFTEGMELDRGFISPY
FVKNQERQVAEMIRPRVLITDQKISAVKDLVNLLENFVKTKEPLVIVCDD
LTGEALSTLVVNKMRGVLDVVAIKSPGFGDRRKQYLEDISIVTGGSFICS
DLGMTLEDVKPEDLGTAERIIVGKEATTIISTGEFELAVKQRIEQINREL
ETTDSQFDTEKLEERRARLGGGVARILIGAATETELKDKKLRCEDALNAT
KAAMEQGILPGGGAALAHLSLKIPEFAKTLPNEDEQVGASIIKAAITAPL
KQICANAGVEGEVVLEKVLDMEFGGGYNAATGEYENLLDSGVLDPAKVTC
WALENSAGVAGLILTTECLVVEIPEKKPVQGDGMGDLPGEQYY*

spliced messenger RNA

>Gchil6852.t1 ID=Gchil6852.t1|Name=Gchil6852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1782bp|location=Sequence derived from alignment at tig00004376_pilon:423959..425740+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATCCCATCCGCATTTGTTTCGGCGCTACCTCTCGCCTCCACATC
TTCTTTTGTGTCCTCGACACGGTCCGTGTCTCTTCGTCCTCGTCATGCTA
TCCGTGTTTCGTCTCCACGGAGCGTTCCGCCCGTTTCCATGGCTGCCAAG
GACATTGCCTTTGGAGAGCAGTCTCGGAAGGCATTGATCGAAGGTGTGGA
TGCAGTTGCAAATGCCGTCAAGGTTACGTTGGGCCCCAAGGGCCGAAATG
TTGTTTTGGGTCGCGGCAACTATTCAGCCCCGCTTAGTGTCAATGATGGT
GTCACTGTGGCGAAGGAAATATCTCTGGAAGATCCCATGGCTAACACTGG
CGCGCGTTTGTTGCAGGAAGTTGCATCAAAGACAGACTCCAAGGCGGGTG
ATGGAACTACTACTTCTACCCTTCTGTGCCAAGAAATTGTTCACCAGGGC
ATCAAGGCTGTTGGAAGCGGACGCAACCCGATTGCCCTTAAGAGGGGCAT
TGACAAGACTGTAAAGTACTTAGTCAAAGAGCTTCAGAATCATGCCACAC
CCAGCAAGGGTATTGAAGATATACGTGCCGTCGCTACCATTTCTTCAGGT
AATGACGAGGAAATCGGAGAGATCATTGCCACTGCCTACGAGAGGATTGG
TGAAACTGGTTCCACTTCCGTCGAGGAGTCACAAAGTCTCGGCAATTCGG
TCGAGTTCACGGAGGGTATGGAGCTTGACCGGGGTTTCATTTCCCCTTAC
TTTGTCAAGAATCAGGAACGTCAAGTGGCCGAGATGATTAGGCCGCGAGT
GCTCATCACTGATCAGAAGATCAGTGCCGTAAAGGACCTAGTCAACCTGC
TTGAGAACTTTGTCAAGACTAAAGAACCTCTAGTGATTGTGTGCGACGAC
TTGACTGGCGAGGCCCTGTCCACCCTGGTTGTCAACAAAATGAGAGGCGT
GTTGGACGTCGTGGCAATCAAATCACCCGGCTTTGGAGACCGCAGAAAGC
AATATCTGGAAGATATATCTATTGTCACCGGCGGTTCATTCATTTGCTCT
GATCTGGGCATGACGCTTGAGGATGTCAAGCCTGAGGATCTCGGAACCGC
TGAACGCATCATTGTCGGGAAGGAGGCCACAACCATTATCTCCACGGGCG
AATTCGAATTGGCTGTTAAGCAGCGCATCGAGCAAATCAATCGTGAGTTG
GAGACCACTGACTCTCAGTTTGACACTGAAAAATTAGAAGAGCGCCGTGC
AAGACTGGGTGGAGGTGTGGCCCGAATTCTAATTGGAGCCGCCACTGAAA
CTGAACTGAAAGATAAAAAGCTTCGATGTGAAGATGCTCTGAACGCCACA
AAGGCTGCGATGGAGCAAGGCATTTTGCCGGGTGGTGGTGCCGCTTTGGC
GCACTTGTCACTAAAGATACCAGAGTTTGCCAAAACATTGCCAAACGAAG
ACGAGCAGGTTGGTGCTTCCATTATCAAGGCTGCCATTACTGCTCCGTTG
AAGCAAATCTGCGCCAACGCTGGTGTCGAGGGTGAAGTGGTGCTTGAGAA
GGTATTGGATATGGAATTTGGTGGTGGGTACAACGCAGCCACTGGTGAAT
ACGAAAATCTACTGGATTCGGGTGTGCTTGACCCGGCCAAGGTCACGTGC
TGGGCTCTCGAAAACTCAGCAGGTGTAGCTGGCCTGATTTTGACCACAGA
ATGCCTGGTTGTCGAAATTCCGGAGAAGAAGCCTGTGCAGGGCGACGGTA
TGGGCGACCTACCTGGCGAGCAATACTATTAA

protein sequence of Gchil6852.t1

>Gchil6852.t1 ID=Gchil6852.t1|Name=Gchil6852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=594bp
MNIPSAFVSALPLASTSSFVSSTRSVSLRPRHAIRVSSPRSVPPVSMAAK
DIAFGEQSRKALIEGVDAVANAVKVTLGPKGRNVVLGRGNYSAPLSVNDG
VTVAKEISLEDPMANTGARLLQEVASKTDSKAGDGTTTSTLLCQEIVHQG
IKAVGSGRNPIALKRGIDKTVKYLVKELQNHATPSKGIEDIRAVATISSG
NDEEIGEIIATAYERIGETGSTSVEESQSLGNSVEFTEGMELDRGFISPY
FVKNQERQVAEMIRPRVLITDQKISAVKDLVNLLENFVKTKEPLVIVCDD
LTGEALSTLVVNKMRGVLDVVAIKSPGFGDRRKQYLEDISIVTGGSFICS
DLGMTLEDVKPEDLGTAERIIVGKEATTIISTGEFELAVKQRIEQINREL
ETTDSQFDTEKLEERRARLGGGVARILIGAATETELKDKKLRCEDALNAT
KAAMEQGILPGGGAALAHLSLKIPEFAKTLPNEDEQVGASIIKAAITAPL
KQICANAGVEGEVVLEKVLDMEFGGGYNAATGEYENLLDSGVLDPAKVTC
WALENSAGVAGLILTTECLVVEIPEKKPVQGDGMGDLPGEQYY*

mRNA from alignment at tig00004376_pilon:423959..425740+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6852.t1 ID=Gchil6852.t1|Name=Gchil6852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1782bp|location=Sequence derived from alignment at tig00004376_pilon:423959..425740+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACATCCCATCCGCATTTGTTTCGGCGCTACCTCTCGCCTCCACATC
TTCTTTTGTGTCCTCGACACGGTCCGTGTCTCTTCGTCCTCGTCATGCTA
TCCGTGTTTCGTCTCCACGGAGCGTTCCGCCCGTTTCCATGGCTGCCAAG
GACATTGCCTTTGGAGAGCAGTCTCGGAAGGCATTGATCGAAGGTGTGGA
TGCAGTTGCAAATGCCGTCAAGGTTACGTTGGGCCCCAAGGGCCGAAATG
TTGTTTTGGGTCGCGGCAACTATTCAGCCCCGCTTAGTGTCAATGATGGT
GTCACTGTGGCGAAGGAAATATCTCTGGAAGATCCCATGGCTAACACTGG
CGCGCGTTTGTTGCAGGAAGTTGCATCAAAGACAGACTCCAAGGCGGGTG
ATGGAACTACTACTTCTACCCTTCTGTGCCAAGAAATTGTTCACCAGGGC
ATCAAGGCTGTTGGAAGCGGACGCAACCCGATTGCCCTTAAGAGGGGCAT
TGACAAGACTGTAAAGTACTTAGTCAAAGAGCTTCAGAATCATGCCACAC
CCAGCAAGGGTATTGAAGATATACGTGCCGTCGCTACCATTTCTTCAGGT
AATGACGAGGAAATCGGAGAGATCATTGCCACTGCCTACGAGAGGATTGG
TGAAACTGGTTCCACTTCCGTCGAGGAGTCACAAAGTCTCGGCAATTCGG
TCGAGTTCACGGAGGGTATGGAGCTTGACCGGGGTTTCATTTCCCCTTAC
TTTGTCAAGAATCAGGAACGTCAAGTGGCCGAGATGATTAGGCCGCGAGT
GCTCATCACTGATCAGAAGATCAGTGCCGTAAAGGACCTAGTCAACCTGC
TTGAGAACTTTGTCAAGACTAAAGAACCTCTAGTGATTGTGTGCGACGAC
TTGACTGGCGAGGCCCTGTCCACCCTGGTTGTCAACAAAATGAGAGGCGT
GTTGGACGTCGTGGCAATCAAATCACCCGGCTTTGGAGACCGCAGAAAGC
AATATCTGGAAGATATATCTATTGTCACCGGCGGTTCATTCATTTGCTCT
GATCTGGGCATGACGCTTGAGGATGTCAAGCCTGAGGATCTCGGAACCGC
TGAACGCATCATTGTCGGGAAGGAGGCCACAACCATTATCTCCACGGGCG
AATTCGAATTGGCTGTTAAGCAGCGCATCGAGCAAATCAATCGTGAGTTG
GAGACCACTGACTCTCAGTTTGACACTGAAAAATTAGAAGAGCGCCGTGC
AAGACTGGGTGGAGGTGTGGCCCGAATTCTAATTGGAGCCGCCACTGAAA
CTGAACTGAAAGATAAAAAGCTTCGATGTGAAGATGCTCTGAACGCCACA
AAGGCTGCGATGGAGCAAGGCATTTTGCCGGGTGGTGGTGCCGCTTTGGC
GCACTTGTCACTAAAGATACCAGAGTTTGCCAAAACATTGCCAAACGAAG
ACGAGCAGGTTGGTGCTTCCATTATCAAGGCTGCCATTACTGCTCCGTTG
AAGCAAATCTGCGCCAACGCTGGTGTCGAGGGTGAAGTGGTGCTTGAGAA
GGTATTGGATATGGAATTTGGTGGTGGGTACAACGCAGCCACTGGTGAAT
ACGAAAATCTACTGGATTCGGGTGTGCTTGACCCGGCCAAGGTCACGTGC
TGGGCTCTCGAAAACTCAGCAGGTGTAGCTGGCCTGATTTTGACCACAGA
ATGCCTGGTTGTCGAAATTCCGGAGAAGAAGCCTGTGCAGGGCGACGGTA
TGGGCGACCTACCTGGCGAGCAATACTATTAA

Coding sequence (CDS) from alignment at tig00004376_pilon:423959..425740+

>Gchil6852.t1 ID=Gchil6852.t1|Name=Gchil6852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1782bp|location=Sequence derived from alignment at tig00004376_pilon:423959..425740+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACATCCCATCCGCATTTGTTTCGGCGCTACCTCTCGCCTCCACATC
TTCTTTTGTGTCCTCGACACGGTCCGTGTCTCTTCGTCCTCGTCATGCTA
TCCGTGTTTCGTCTCCACGGAGCGTTCCGCCCGTTTCCATGGCTGCCAAG
GACATTGCCTTTGGAGAGCAGTCTCGGAAGGCATTGATCGAAGGTGTGGA
TGCAGTTGCAAATGCCGTCAAGGTTACGTTGGGCCCCAAGGGCCGAAATG
TTGTTTTGGGTCGCGGCAACTATTCAGCCCCGCTTAGTGTCAATGATGGT
GTCACTGTGGCGAAGGAAATATCTCTGGAAGATCCCATGGCTAACACTGG
CGCGCGTTTGTTGCAGGAAGTTGCATCAAAGACAGACTCCAAGGCGGGTG
ATGGAACTACTACTTCTACCCTTCTGTGCCAAGAAATTGTTCACCAGGGC
ATCAAGGCTGTTGGAAGCGGACGCAACCCGATTGCCCTTAAGAGGGGCAT
TGACAAGACTGTAAAGTACTTAGTCAAAGAGCTTCAGAATCATGCCACAC
CCAGCAAGGGTATTGAAGATATACGTGCCGTCGCTACCATTTCTTCAGGT
AATGACGAGGAAATCGGAGAGATCATTGCCACTGCCTACGAGAGGATTGG
TGAAACTGGTTCCACTTCCGTCGAGGAGTCACAAAGTCTCGGCAATTCGG
TCGAGTTCACGGAGGGTATGGAGCTTGACCGGGGTTTCATTTCCCCTTAC
TTTGTCAAGAATCAGGAACGTCAAGTGGCCGAGATGATTAGGCCGCGAGT
GCTCATCACTGATCAGAAGATCAGTGCCGTAAAGGACCTAGTCAACCTGC
TTGAGAACTTTGTCAAGACTAAAGAACCTCTAGTGATTGTGTGCGACGAC
TTGACTGGCGAGGCCCTGTCCACCCTGGTTGTCAACAAAATGAGAGGCGT
GTTGGACGTCGTGGCAATCAAATCACCCGGCTTTGGAGACCGCAGAAAGC
AATATCTGGAAGATATATCTATTGTCACCGGCGGTTCATTCATTTGCTCT
GATCTGGGCATGACGCTTGAGGATGTCAAGCCTGAGGATCTCGGAACCGC
TGAACGCATCATTGTCGGGAAGGAGGCCACAACCATTATCTCCACGGGCG
AATTCGAATTGGCTGTTAAGCAGCGCATCGAGCAAATCAATCGTGAGTTG
GAGACCACTGACTCTCAGTTTGACACTGAAAAATTAGAAGAGCGCCGTGC
AAGACTGGGTGGAGGTGTGGCCCGAATTCTAATTGGAGCCGCCACTGAAA
CTGAACTGAAAGATAAAAAGCTTCGATGTGAAGATGCTCTGAACGCCACA
AAGGCTGCGATGGAGCAAGGCATTTTGCCGGGTGGTGGTGCCGCTTTGGC
GCACTTGTCACTAAAGATACCAGAGTTTGCCAAAACATTGCCAAACGAAG
ACGAGCAGGTTGGTGCTTCCATTATCAAGGCTGCCATTACTGCTCCGTTG
AAGCAAATCTGCGCCAACGCTGGTGTCGAGGGTGAAGTGGTGCTTGAGAA
GGTATTGGATATGGAATTTGGTGGTGGGTACAACGCAGCCACTGGTGAAT
ACGAAAATCTACTGGATTCGGGTGTGCTTGACCCGGCCAAGGTCACGTGC
TGGGCTCTCGAAAACTCAGCAGGTGTAGCTGGCCTGATTTTGACCACAGA
ATGCCTGGTTGTCGAAATTCCGGAGAAGAAGCCTGTGCAGGGCGACGGTA
TGGGCGACCTACCTGGCGAGCAATACTATTAA