Gchil6850.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6850.t1
Unique NameGchil6850.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:418451..419398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15718712
Preferred nameDHRS7
PFAMsadh_short
Max annot lvl33208|Metazoa
KEGG koko:K11165
Evalue1.15e-50
EggNOG OGsCOG1028@1|root,KOG1205@2759|Eukaryota,38HW1@33154|Opisthokonta,3BFJM@33208|Metazoa
Descriptionoxidoreductase activity
COG categoryQ
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6850Gchil6850Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 418451..419398 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6850.t1.stop1Gchil6850.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 418451..418453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6850.t1.CDS1Gchil6850.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 418451..419398 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6850.t1.exon1Gchil6850.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 418451..419398 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6850.t1.start1Gchil6850.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 419396..419398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6850.t1Gchil6850.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 418451..419398 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6850.t1 ID=Gchil6850.t1|Name=Gchil6850.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=316bp
MPFFGILGISCVAAGAWLARRLFRFLTGDCDLKTLSACINPRTFHGKVVW
ITGASSGIGAALAVQLAKHGALLILTARNEEKLNELADQLPCPRDFVYVL
PLDLSSKISHIEDTANDVSSIFGRLDYVFNNAGISSRVTANDLEMDGVQR
IMQVNFLSAVALTRACLRSLREAPGGGGTIVNTVSLIAIIRTPLRAPYAA
SKAAMAAYFDCLQLEEPNIRVLNVYPGSVRTPIAHNAMIAGGKVFGRADP
NTEAGLDPGRVADRMLAAVSSNTSTCWIAKPKELMATRLATWLPGLWAFI
ASKRADSYRRRIEGS*
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spliced messenger RNA

>Gchil6850.t1 ID=Gchil6850.t1|Name=Gchil6850.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00004376_pilon:418451..419398- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTTCTTCGGAATTCTGGGCATTTCTTGCGTCGCAGCTGGAGCATG
GCTTGCACGTCGTCTTTTTCGTTTCCTGACAGGTGACTGTGACCTAAAAA
CATTATCTGCCTGTATCAATCCCCGTACATTTCATGGCAAGGTCGTGTGG
ATAACTGGTGCGAGCAGCGGCATTGGTGCGGCATTAGCTGTACAGCTTGC
GAAACACGGTGCCCTGCTTATTCTTACCGCCCGAAATGAAGAAAAGCTCA
ATGAGCTCGCTGATCAGCTTCCATGTCCGAGAGACTTTGTATACGTTTTG
CCACTAGACTTGTCGTCTAAAATATCGCATATCGAGGACACTGCGAACGA
TGTGTCTTCCATATTTGGCAGACTCGACTATGTTTTCAACAATGCGGGTA
TATCTTCTCGAGTGACGGCAAACGATCTTGAAATGGATGGCGTTCAAAGA
ATTATGCAGGTCAATTTCTTGTCCGCTGTAGCCTTGACTAGAGCGTGTTT
ACGTTCATTACGTGAGGCGCCAGGGGGTGGCGGAACCATTGTGAACACTG
TTTCGCTCATAGCCATCATTCGTACTCCTCTCCGTGCCCCCTACGCCGCA
TCGAAAGCTGCAATGGCTGCGTATTTTGACTGTCTTCAATTAGAAGAACC
CAATATTCGTGTCCTCAATGTTTATCCCGGCAGTGTTCGCACTCCCATCG
CACACAATGCAATGATTGCTGGTGGGAAGGTGTTTGGTAGGGCGGACCCT
AATACTGAGGCCGGGCTTGATCCAGGACGTGTTGCAGATAGGATGCTCGC
CGCCGTTTCATCTAATACTTCAACGTGCTGGATAGCGAAGCCCAAAGAGC
TTATGGCGACACGTCTGGCCACTTGGTTACCAGGTTTATGGGCTTTCATT
GCTTCCAAAAGAGCCGATTCATATCGAAGAAGAATTGAAGGTTCATGA
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protein sequence of Gchil6850.t1

>Gchil6850.t1 ID=Gchil6850.t1|Name=Gchil6850.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=316bp
MPFFGILGISCVAAGAWLARRLFRFLTGDCDLKTLSACINPRTFHGKVVW
ITGASSGIGAALAVQLAKHGALLILTARNEEKLNELADQLPCPRDFVYVL
PLDLSSKISHIEDTANDVSSIFGRLDYVFNNAGISSRVTANDLEMDGVQR
IMQVNFLSAVALTRACLRSLREAPGGGGTIVNTVSLIAIIRTPLRAPYAA
SKAAMAAYFDCLQLEEPNIRVLNVYPGSVRTPIAHNAMIAGGKVFGRADP
NTEAGLDPGRVADRMLAAVSSNTSTCWIAKPKELMATRLATWLPGLWAFI
ASKRADSYRRRIEGS*
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mRNA from alignment at tig00004376_pilon:418451..419398-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6850.t1 ID=Gchil6850.t1|Name=Gchil6850.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00004376_pilon:418451..419398- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTTCTTCGGAATTCTGGGCATTTCTTGCGTCGCAGCTGGAGCATG
GCTTGCACGTCGTCTTTTTCGTTTCCTGACAGGTGACTGTGACCTAAAAA
CATTATCTGCCTGTATCAATCCCCGTACATTTCATGGCAAGGTCGTGTGG
ATAACTGGTGCGAGCAGCGGCATTGGTGCGGCATTAGCTGTACAGCTTGC
GAAACACGGTGCCCTGCTTATTCTTACCGCCCGAAATGAAGAAAAGCTCA
ATGAGCTCGCTGATCAGCTTCCATGTCCGAGAGACTTTGTATACGTTTTG
CCACTAGACTTGTCGTCTAAAATATCGCATATCGAGGACACTGCGAACGA
TGTGTCTTCCATATTTGGCAGACTCGACTATGTTTTCAACAATGCGGGTA
TATCTTCTCGAGTGACGGCAAACGATCTTGAAATGGATGGCGTTCAAAGA
ATTATGCAGGTCAATTTCTTGTCCGCTGTAGCCTTGACTAGAGCGTGTTT
ACGTTCATTACGTGAGGCGCCAGGGGGTGGCGGAACCATTGTGAACACTG
TTTCGCTCATAGCCATCATTCGTACTCCTCTCCGTGCCCCCTACGCCGCA
TCGAAAGCTGCAATGGCTGCGTATTTTGACTGTCTTCAATTAGAAGAACC
CAATATTCGTGTCCTCAATGTTTATCCCGGCAGTGTTCGCACTCCCATCG
CACACAATGCAATGATTGCTGGTGGGAAGGTGTTTGGTAGGGCGGACCCT
AATACTGAGGCCGGGCTTGATCCAGGACGTGTTGCAGATAGGATGCTCGC
CGCCGTTTCATCTAATACTTCAACGTGCTGGATAGCGAAGCCCAAAGAGC
TTATGGCGACACGTCTGGCCACTTGGTTACCAGGTTTATGGGCTTTCATT
GCTTCCAAAAGAGCCGATTCATATCGAAGAAGAATTGAAGGTTCATGA
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Coding sequence (CDS) from alignment at tig00004376_pilon:418451..419398-

>Gchil6850.t1 ID=Gchil6850.t1|Name=Gchil6850.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00004376_pilon:418451..419398- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTTCTTCGGAATTCTGGGCATTTCTTGCGTCGCAGCTGGAGCATG
GCTTGCACGTCGTCTTTTTCGTTTCCTGACAGGTGACTGTGACCTAAAAA
CATTATCTGCCTGTATCAATCCCCGTACATTTCATGGCAAGGTCGTGTGG
ATAACTGGTGCGAGCAGCGGCATTGGTGCGGCATTAGCTGTACAGCTTGC
GAAACACGGTGCCCTGCTTATTCTTACCGCCCGAAATGAAGAAAAGCTCA
ATGAGCTCGCTGATCAGCTTCCATGTCCGAGAGACTTTGTATACGTTTTG
CCACTAGACTTGTCGTCTAAAATATCGCATATCGAGGACACTGCGAACGA
TGTGTCTTCCATATTTGGCAGACTCGACTATGTTTTCAACAATGCGGGTA
TATCTTCTCGAGTGACGGCAAACGATCTTGAAATGGATGGCGTTCAAAGA
ATTATGCAGGTCAATTTCTTGTCCGCTGTAGCCTTGACTAGAGCGTGTTT
ACGTTCATTACGTGAGGCGCCAGGGGGTGGCGGAACCATTGTGAACACTG
TTTCGCTCATAGCCATCATTCGTACTCCTCTCCGTGCCCCCTACGCCGCA
TCGAAAGCTGCAATGGCTGCGTATTTTGACTGTCTTCAATTAGAAGAACC
CAATATTCGTGTCCTCAATGTTTATCCCGGCAGTGTTCGCACTCCCATCG
CACACAATGCAATGATTGCTGGTGGGAAGGTGTTTGGTAGGGCGGACCCT
AATACTGAGGCCGGGCTTGATCCAGGACGTGTTGCAGATAGGATGCTCGC
CGCCGTTTCATCTAATACTTCAACGTGCTGGATAGCGAAGCCCAAAGAGC
TTATGGCGACACGTCTGGCCACTTGGTTACCAGGTTTATGGGCTTTCATT
GCTTCCAAAAGAGCCGATTCATATCGAAGAAGAATTGAAGGTTCATGA
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