Gchil6918.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6918.t1
Unique NameGchil6918.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length761
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:686835..689285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703819.1
PFAMsGlyco_transf_90
Max annot lvl2759|Eukaryota
Evalue1.05e-97
EggNOG OGsKOG2458@1|root,KOG2458@2759|Eukaryota
Descriptionglucosyltransferase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6918Gchil6918Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 686835..689285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6918.t1Gchil6918.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 686835..689285 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6918.t1.stop1Gchil6918.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 686835..686837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6918.t1.CDS1Gchil6918.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 686835..687772 -
Gchil6918.t1.CDS2Gchil6918.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 687855..689016 -
Gchil6918.t1.CDS3Gchil6918.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 689103..689285 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6918.t1.exon1Gchil6918.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 686835..687772 -
Gchil6918.t1.exon2Gchil6918.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 687855..689016 -
Gchil6918.t1.exon3Gchil6918.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 689103..689285 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6918.t1.intron1Gchil6918.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 687773..687854 -
Gchil6918.t1.intron2Gchil6918.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 689017..689102 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6918.t1.start1Gchil6918.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 689283..689285 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6918.t1 ID=Gchil6918.t1|Name=Gchil6918.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=761bp
MRHKSSSRSSRHAPLRKNLSHRFKNDSKNGNASHFVQESLLFVWRHHIIR
AIAFVTKNWGYILFSLFILMYTTTFWDVAASRPRPHSQKKVIESLRMAIP
TNPHLSNQENITVQIHLPGAITNEGKTFENLEGNSREERSSNLLPGAIGL
TGAFDEHGDNHTENNNTSTAKTEERAEKKKKETVSATKDGPPGSPSHASS
EKGSSSEKKKKKKKKKKAGSKSGKKKKKKKKKKRASDPSEKKESDASTTK
AGGAKPREKNLGNNSKGSERSDSSSSNDSSANLIKDKPESGSIDAETPHQ
STEKTSKNEKKSETTSKTGSKEPDKSSSSRDETSTKKTKGKKKKGKKEKK
KKKAKSAEEPFTVNSTYTGPHPMNRNMEELQVPGDTGILDDSQVRSYYEK
LVKAYLAPFGDGIDRRSFFEILRRKTYSLSPPGSNKGIQTILFQLIEKKL
YLLDPYEMTKNSKPFYKTRIQELVGLLSEIAKEGNVPNTEFIVAVHDCVQ
TVNAEHIYRGSVYQESSPTFTIVSCNFSDNIPFPMWEGDPVRGGLQSWDA
KMEKYKSSDKTPWEEKQSKAVFRGGNRPSMFYKTKEEADEHANDSGRSRL
HFLSSQNPDFFDVGVSGRWGGEMHQMRILSEADHHQYKYILYAEGNCFWA
DRLNKQIFGPSAILKQETPCGQFWEPLLKPFTHYIPTDFFFQDTIEKIKW
AQEHDSEAKAIVKNANDFAASFLTQKAIKTYVEVLLVEYSKLLNSKKIKA
EHGSQDVTAG*
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spliced messenger RNA

>Gchil6918.t1 ID=Gchil6918.t1|Name=Gchil6918.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2283bp|location=Sequence derived from alignment at tig00004376_pilon:686835..689285- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCATAAATCATCGTCTAGAAGCTCAAGACATGCACCTCTCAGAAA
AAACTTGTCGCATCGATTCAAGAATGATTCGAAAAACGGAAACGCATCTC
ATTTCGTGCAGGAGTCCCTTCTTTTCGTATGGAGGCATCACATAATAAGA
GCGATAGCTTTTGTAACCAAAAACTGGGGATATATATTGTTCAGCTTATT
CATTCTTATGTACACGACAACTTTCTGGGATGTCGCAGCATCGAGGCCAA
GACCTCATTCACAGAAAAAAGTGATCGAATCCTTGCGTATGGCCATCCCT
ACAAATCCCCACCTTTCGAATCAAGAAAACATAACCGTTCAAATTCATTT
GCCCGGAGCTATAACAAATGAAGGTAAAACGTTTGAGAATCTTGAAGGAA
ACAGTAGAGAAGAAAGGAGCTCAAATCTCCTTCCCGGGGCAATCGGCCTG
ACGGGAGCCTTTGACGAGCACGGGGACAATCACACGGAGAACAACAATAC
CAGTACCGCGAAAACAGAAGAAAGAGCCGAAAAGAAAAAAAAAGAAACCG
TTTCAGCAACCAAGGACGGGCCACCAGGTTCTCCATCACATGCTTCAAGC
GAAAAAGGCAGCTCTTCCGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GGCGGGAAGCAAAAGCGGAAAGAAGAAAAAGAAGAAAAAAAAGAAGAAGA
GGGCTAGTGATCCATCAGAGAAGAAGGAATCCGATGCTTCAACTACAAAA
GCTGGAGGAGCGAAACCGCGTGAGAAAAACCTCGGAAACAACTCGAAAGG
ATCTGAAAGATCGGATTCGTCTTCATCCAATGACTCTTCTGCAAATCTGA
TCAAAGATAAACCCGAGTCTGGTTCGATAGATGCAGAGACGCCACACCAA
TCGACAGAAAAAACATCCAAAAACGAGAAAAAATCCGAGACCACATCGAA
AACGGGTTCCAAAGAACCAGATAAGTCTTCATCTAGTAGAGATGAGACGA
GTACGAAAAAGACAAAAGGGAAGAAGAAGAAAGGCAAAAAGGAAAAAAAG
AAGAAGAAAGCTAAATCAGCGGAGGAACCGTTCACTGTGAACAGTACATA
CACTGGACCGCATCCAATGAACAGGAATATGGAAGAACTTCAAGTTCCTG
GCGACACCGGAATATTGGATGATTCCCAAGTTCGTTCTTACTACGAGAAA
CTTGTGAAAGCATATCTTGCCCCGTTTGGCGACGGAATCGACAGACGTTC
ATTTTTTGAGATTCTCAGACGGAAGACGTACTCCTTGAGCCCCCCGGGGT
CTAACAAAGGAATCCAAACGATTCTCTTCCAGCTCATTGAAAAAAAGCTA
TATCTTCTGGATCCCTATGAGATGACGAAAAACTCGAAGCCCTTCTACAA
GACCCGTATCCAGGAGCTTGTCGGGTTGCTGAGCGAAATAGCAAAAGAAG
GAAACGTTCCCAACACAGAATTTATTGTCGCTGTTCATGACTGTGTTCAG
ACCGTTAATGCCGAGCACATCTACCGAGGATCTGTATATCAGGAGAGTAG
CCCGACGTTCACAATTGTATCTTGCAACTTCTCAGACAACATACCTTTTC
CAATGTGGGAGGGGGATCCTGTTCGAGGTGGACTCCAAAGCTGGGATGCG
AAAATGGAAAAATACAAATCCTCTGATAAGACCCCTTGGGAAGAGAAACA
ATCGAAAGCAGTGTTTCGCGGGGGAAACCGTCCAAGCATGTTCTACAAAA
CAAAAGAAGAAGCAGATGAACACGCAAATGATTCTGGAAGAAGTAGACTT
CATTTCCTATCTTCGCAGAATCCAGACTTCTTCGACGTCGGTGTGAGCGG
GCGATGGGGCGGCGAAATGCATCAGATGAGAATTCTTAGCGAAGCTGACC
ACCACCAGTACAAGTATATCTTGTACGCCGAGGGAAACTGCTTCTGGGCC
GATCGCTTAAATAAGCAGATATTCGGACCTTCAGCCATACTCAAACAGGA
AACGCCTTGTGGACAGTTCTGGGAACCACTTCTCAAGCCTTTTACCCATT
ACATTCCAACAGATTTCTTCTTTCAGGATACCATCGAAAAGATCAAATGG
GCTCAAGAGCATGACTCCGAAGCAAAGGCGATCGTCAAGAACGCTAACGA
TTTTGCTGCGAGCTTTCTCACCCAGAAGGCAATCAAAACATACGTTGAAG
TCCTTCTTGTTGAGTATTCCAAGCTCTTGAATTCAAAAAAGATAAAGGCA
GAACATGGTAGTCAAGATGTGACGGCCGGCTAA
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protein sequence of Gchil6918.t1

>Gchil6918.t1 ID=Gchil6918.t1|Name=Gchil6918.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=761bp
MRHKSSSRSSRHAPLRKNLSHRFKNDSKNGNASHFVQESLLFVWRHHIIR
AIAFVTKNWGYILFSLFILMYTTTFWDVAASRPRPHSQKKVIESLRMAIP
TNPHLSNQENITVQIHLPGAITNEGKTFENLEGNSREERSSNLLPGAIGL
TGAFDEHGDNHTENNNTSTAKTEERAEKKKKETVSATKDGPPGSPSHASS
EKGSSSEKKKKKKKKKKAGSKSGKKKKKKKKKKRASDPSEKKESDASTTK
AGGAKPREKNLGNNSKGSERSDSSSSNDSSANLIKDKPESGSIDAETPHQ
STEKTSKNEKKSETTSKTGSKEPDKSSSSRDETSTKKTKGKKKKGKKEKK
KKKAKSAEEPFTVNSTYTGPHPMNRNMEELQVPGDTGILDDSQVRSYYEK
LVKAYLAPFGDGIDRRSFFEILRRKTYSLSPPGSNKGIQTILFQLIEKKL
YLLDPYEMTKNSKPFYKTRIQELVGLLSEIAKEGNVPNTEFIVAVHDCVQ
TVNAEHIYRGSVYQESSPTFTIVSCNFSDNIPFPMWEGDPVRGGLQSWDA
KMEKYKSSDKTPWEEKQSKAVFRGGNRPSMFYKTKEEADEHANDSGRSRL
HFLSSQNPDFFDVGVSGRWGGEMHQMRILSEADHHQYKYILYAEGNCFWA
DRLNKQIFGPSAILKQETPCGQFWEPLLKPFTHYIPTDFFFQDTIEKIKW
AQEHDSEAKAIVKNANDFAASFLTQKAIKTYVEVLLVEYSKLLNSKKIKA
EHGSQDVTAG*
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mRNA from alignment at tig00004376_pilon:686835..689285-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6918.t1 ID=Gchil6918.t1|Name=Gchil6918.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2451bp|location=Sequence derived from alignment at tig00004376_pilon:686835..689285- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCATAAATCATCGTCTAGAAGCTCAAGACATGCACCTCTCAGAAA
AAACTTGTCGCATCGATTCAAGAATGATTCGAAAAACGGAAACGCATCTC
ATTTCGTGCAGGAGTCCCTTCTTTTCGTATGGAGGCATCACATAATAAGA
GCGATAGCTTTTGTAACCAAAAACTGGGGATATGTAAGTGATTGTGTAGG
GTCTCTTTATAATGGTATATCAAAGACTGACATGTACCTTCCTCTTACCG
TGATTGACACCGTAATCAGATATTGTTCAGCTTATTCATTCTTATGTACA
CGACAACTTTCTGGGATGTCGCAGCATCGAGGCCAAGACCTCATTCACAG
AAAAAAGTGATCGAATCCTTGCGTATGGCCATCCCTACAAATCCCCACCT
TTCGAATCAAGAAAACATAACCGTTCAAATTCATTTGCCCGGAGCTATAA
CAAATGAAGGTAAAACGTTTGAGAATCTTGAAGGAAACAGTAGAGAAGAA
AGGAGCTCAAATCTCCTTCCCGGGGCAATCGGCCTGACGGGAGCCTTTGA
CGAGCACGGGGACAATCACACGGAGAACAACAATACCAGTACCGCGAAAA
CAGAAGAAAGAGCCGAAAAGAAAAAAAAAGAAACCGTTTCAGCAACCAAG
GACGGGCCACCAGGTTCTCCATCACATGCTTCAAGCGAAAAAGGCAGCTC
TTCCGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGCGGGAAGCAAAA
GCGGAAAGAAGAAAAAGAAGAAAAAAAAGAAGAAGAGGGCTAGTGATCCA
TCAGAGAAGAAGGAATCCGATGCTTCAACTACAAAAGCTGGAGGAGCGAA
ACCGCGTGAGAAAAACCTCGGAAACAACTCGAAAGGATCTGAAAGATCGG
ATTCGTCTTCATCCAATGACTCTTCTGCAAATCTGATCAAAGATAAACCC
GAGTCTGGTTCGATAGATGCAGAGACGCCACACCAATCGACAGAAAAAAC
ATCCAAAAACGAGAAAAAATCCGAGACCACATCGAAAACGGGTTCCAAAG
AACCAGATAAGTCTTCATCTAGTAGAGATGAGACGAGTACGAAAAAGACA
AAAGGGAAGAAGAAGAAAGGCAAAAAGGAAAAAAAGAAGAAGAAAGCTAA
ATCAGCGGAGGAACCGTTCACTGTGAACAGTACATACACTGGACCGCATC
CAATGAACAGGAATATGGAAGAACTTCAAGTTCCTGGCGACACCGGAATA
TTGGATGATTCCCAAGTTCGTTCTTACTACGAGAAACTTGTGAAAGCATA
TCTTGCCCCGTTTGGCGACGGAATCGACAGACGTTCATTTTTTGAGATTC
TCAGACGGAAGACGTACTCCTTGAGCCCCCCGGGGTCTAACAAAGGAATC
CAAACGATTCTCTTCCAGCTCATTGAAAAAAGTAAGTATTCTCTTCAAAA
ATCAATCACAAACTACACGCTACGGTGATTTCGGTTGTATTCTGACCCAT
CATTCCATCAAAGAGCTATATCTTCTGGATCCCTATGAGATGACGAAAAA
CTCGAAGCCCTTCTACAAGACCCGTATCCAGGAGCTTGTCGGGTTGCTGA
GCGAAATAGCAAAAGAAGGAAACGTTCCCAACACAGAATTTATTGTCGCT
GTTCATGACTGTGTTCAGACCGTTAATGCCGAGCACATCTACCGAGGATC
TGTATATCAGGAGAGTAGCCCGACGTTCACAATTGTATCTTGCAACTTCT
CAGACAACATACCTTTTCCAATGTGGGAGGGGGATCCTGTTCGAGGTGGA
CTCCAAAGCTGGGATGCGAAAATGGAAAAATACAAATCCTCTGATAAGAC
CCCTTGGGAAGAGAAACAATCGAAAGCAGTGTTTCGCGGGGGAAACCGTC
CAAGCATGTTCTACAAAACAAAAGAAGAAGCAGATGAACACGCAAATGAT
TCTGGAAGAAGTAGACTTCATTTCCTATCTTCGCAGAATCCAGACTTCTT
CGACGTCGGTGTGAGCGGGCGATGGGGCGGCGAAATGCATCAGATGAGAA
TTCTTAGCGAAGCTGACCACCACCAGTACAAGTATATCTTGTACGCCGAG
GGAAACTGCTTCTGGGCCGATCGCTTAAATAAGCAGATATTCGGACCTTC
AGCCATACTCAAACAGGAAACGCCTTGTGGACAGTTCTGGGAACCACTTC
TCAAGCCTTTTACCCATTACATTCCAACAGATTTCTTCTTTCAGGATACC
ATCGAAAAGATCAAATGGGCTCAAGAGCATGACTCCGAAGCAAAGGCGAT
CGTCAAGAACGCTAACGATTTTGCTGCGAGCTTTCTCACCCAGAAGGCAA
TCAAAACATACGTTGAAGTCCTTCTTGTTGAGTATTCCAAGCTCTTGAAT
TCAAAAAAGATAAAGGCAGAACATGGTAGTCAAGATGTGACGGCCGGCTA
A
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Coding sequence (CDS) from alignment at tig00004376_pilon:686835..689285-

>Gchil6918.t1 ID=Gchil6918.t1|Name=Gchil6918.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2283bp|location=Sequence derived from alignment at tig00004376_pilon:686835..689285- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCATAAATCATCGTCTAGAAGCTCAAGACATGCACCTCTCAGAAA
AAACTTGTCGCATCGATTCAAGAATGATTCGAAAAACGGAAACGCATCTC
ATTTCGTGCAGGAGTCCCTTCTTTTCGTATGGAGGCATCACATAATAAGA
GCGATAGCTTTTGTAACCAAAAACTGGGGATATATATTGTTCAGCTTATT
CATTCTTATGTACACGACAACTTTCTGGGATGTCGCAGCATCGAGGCCAA
GACCTCATTCACAGAAAAAAGTGATCGAATCCTTGCGTATGGCCATCCCT
ACAAATCCCCACCTTTCGAATCAAGAAAACATAACCGTTCAAATTCATTT
GCCCGGAGCTATAACAAATGAAGGTAAAACGTTTGAGAATCTTGAAGGAA
ACAGTAGAGAAGAAAGGAGCTCAAATCTCCTTCCCGGGGCAATCGGCCTG
ACGGGAGCCTTTGACGAGCACGGGGACAATCACACGGAGAACAACAATAC
CAGTACCGCGAAAACAGAAGAAAGAGCCGAAAAGAAAAAAAAAGAAACCG
TTTCAGCAACCAAGGACGGGCCACCAGGTTCTCCATCACATGCTTCAAGC
GAAAAAGGCAGCTCTTCCGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GGCGGGAAGCAAAAGCGGAAAGAAGAAAAAGAAGAAAAAAAAGAAGAAGA
GGGCTAGTGATCCATCAGAGAAGAAGGAATCCGATGCTTCAACTACAAAA
GCTGGAGGAGCGAAACCGCGTGAGAAAAACCTCGGAAACAACTCGAAAGG
ATCTGAAAGATCGGATTCGTCTTCATCCAATGACTCTTCTGCAAATCTGA
TCAAAGATAAACCCGAGTCTGGTTCGATAGATGCAGAGACGCCACACCAA
TCGACAGAAAAAACATCCAAAAACGAGAAAAAATCCGAGACCACATCGAA
AACGGGTTCCAAAGAACCAGATAAGTCTTCATCTAGTAGAGATGAGACGA
GTACGAAAAAGACAAAAGGGAAGAAGAAGAAAGGCAAAAAGGAAAAAAAG
AAGAAGAAAGCTAAATCAGCGGAGGAACCGTTCACTGTGAACAGTACATA
CACTGGACCGCATCCAATGAACAGGAATATGGAAGAACTTCAAGTTCCTG
GCGACACCGGAATATTGGATGATTCCCAAGTTCGTTCTTACTACGAGAAA
CTTGTGAAAGCATATCTTGCCCCGTTTGGCGACGGAATCGACAGACGTTC
ATTTTTTGAGATTCTCAGACGGAAGACGTACTCCTTGAGCCCCCCGGGGT
CTAACAAAGGAATCCAAACGATTCTCTTCCAGCTCATTGAAAAAAAGCTA
TATCTTCTGGATCCCTATGAGATGACGAAAAACTCGAAGCCCTTCTACAA
GACCCGTATCCAGGAGCTTGTCGGGTTGCTGAGCGAAATAGCAAAAGAAG
GAAACGTTCCCAACACAGAATTTATTGTCGCTGTTCATGACTGTGTTCAG
ACCGTTAATGCCGAGCACATCTACCGAGGATCTGTATATCAGGAGAGTAG
CCCGACGTTCACAATTGTATCTTGCAACTTCTCAGACAACATACCTTTTC
CAATGTGGGAGGGGGATCCTGTTCGAGGTGGACTCCAAAGCTGGGATGCG
AAAATGGAAAAATACAAATCCTCTGATAAGACCCCTTGGGAAGAGAAACA
ATCGAAAGCAGTGTTTCGCGGGGGAAACCGTCCAAGCATGTTCTACAAAA
CAAAAGAAGAAGCAGATGAACACGCAAATGATTCTGGAAGAAGTAGACTT
CATTTCCTATCTTCGCAGAATCCAGACTTCTTCGACGTCGGTGTGAGCGG
GCGATGGGGCGGCGAAATGCATCAGATGAGAATTCTTAGCGAAGCTGACC
ACCACCAGTACAAGTATATCTTGTACGCCGAGGGAAACTGCTTCTGGGCC
GATCGCTTAAATAAGCAGATATTCGGACCTTCAGCCATACTCAAACAGGA
AACGCCTTGTGGACAGTTCTGGGAACCACTTCTCAAGCCTTTTACCCATT
ACATTCCAACAGATTTCTTCTTTCAGGATACCATCGAAAAGATCAAATGG
GCTCAAGAGCATGACTCCGAAGCAAAGGCGATCGTCAAGAACGCTAACGA
TTTTGCTGCGAGCTTTCTCACCCAGAAGGCAATCAAAACATACGTTGAAG
TCCTTCTTGTTGAGTATTCCAAGCTCTTGAATTCAAAAAAGATAAAGGCA
GAACATGGTAGTCAAGATGTGACGGCCGGCTAA
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