Gchil6847.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6847.t1
Unique NameGchil6847.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length737
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:384875..387160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707295.1
Preferred nameTK
PFAMsTransket_pyr,Transketolase_C,Transketolase_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00032,RC00226,RC00571,RC01560
KEGG koko:K00615,ko:K01662
KEGG ReactionR01067,R01641,R01830,R05636,R06590
KEGG Pathwayko00030,ko00710,ko00730,ko00900,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map00730,map00900,map01051,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00096,M00165,M00167
GOsGO:0003674,GO:0003824,GO:0004802,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006970,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009651,GO:0009941,GO:0010035,GO:0010038,GO:0016020,GO:0016740,GO:0016744,GO:0030145,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042221,GO:0042651,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0055035
Evalue2e-246
EggNOG OGsCOG0021@1|root,KOG0523@2759|Eukaryota
EC2.2.1.1,2.2.1.7
Descriptiontransketolase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6847Gchil6847Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 384875..387160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6847.t1Gchil6847.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 384875..387160 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6847.t1.stop1Gchil6847.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 384875..384877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6847.t1.CDS1Gchil6847.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 384875..385554 -
Gchil6847.t1.CDS2Gchil6847.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 385630..387160 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6847.t1.exon1Gchil6847.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 384875..385554 -
Gchil6847.t1.exon2Gchil6847.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 385630..387160 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6847.t1.intron1Gchil6847.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 385555..385629 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6847.t1.start1Gchil6847.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 387158..387160 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6847.t1 ID=Gchil6847.t1|Name=Gchil6847.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=737bp
MTRPVLNSATDNGGTHPLRRTRPDHISDGSLESLYQLEMSVRGSSSVSSD
EESTPDKSMLSNYSTTEQLALANLCINCIRFLCVDAINHANSGHPGVCMG
MATAAFVLFDNHMKFNPSNPKWLNRDRFVLSAGHGSMLLYSLLHLYGYES
VSLDDIKRFRKLNSTTPGHPECVETAGVEVCTGPLGQGISNAVGMAIAEA
HVAATYNRPGFPLVDNYTFCIAGDGCMMEGISAEACSLAGHLKLGKLIVL
YDDNKISIDGSTDIAFTEDVSKRFEAYGWQVIHVGEGTTDVTAIDRAILS
AKRCTIKPTLIRVSTVIGYGGPNVQNTAKAHGAALGTDETTAARKALSYE
YEPFEIPAPTQEHLRRKLEAGISQEASWKWILEEYKTVYPKLHEQFIEHV
VNGDVSKAVTTALRKTALSLQRKSQATRKHSKAVLNAFAPLVPNLIGGSA
DTSPSTLTDLECSSVYTSECRTGRNIRFGVREHAMGAISNGIGLAGYNLL
PFCSTFFVFTDYMRAAMRMASMSETGTLFVMTHDSIGLGEDGPSHQPIEH
LASFRAMPNHNVWRPADGVETAAAYARALATRNCPSTLVLSRQSTNSLRG
TDFEEAQKGGYVVYNTANGRMDGVLIATGTEVTIAVSAAKKLEEDGFGVR
VVSLPCWEVFAQQGRRYRKNVINLEREYCVAVEAGSRFGWHQYADWFVCV
DEFGRSGKGAEVMKHMGICEDRIIDRFLEMVANMVE*
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spliced messenger RNA

>Gchil6847.t1 ID=Gchil6847.t1|Name=Gchil6847.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2211bp|location=Sequence derived from alignment at tig00004376_pilon:384875..387160- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGTCCAGTCTTAAACTCCGCTACGGACAACGGGGGAACCCACCC
TCTCAGACGAACTCGCCCTGACCATATCTCAGATGGATCACTGGAATCTT
TATACCAGCTTGAAATGTCTGTCAGAGGTTCTTCATCGGTTTCATCCGAT
GAAGAATCTACTCCGGACAAATCCATGCTGTCCAACTACTCGACAACGGA
ACAACTGGCCTTGGCGAACCTATGCATAAACTGTATTCGTTTTCTATGCG
TTGATGCCATCAATCACGCAAACAGTGGTCATCCAGGAGTTTGCATGGGC
ATGGCGACAGCTGCGTTTGTGTTGTTCGACAACCATATGAAGTTCAACCC
TTCAAATCCAAAATGGCTCAACAGGGACAGATTTGTCTTATCTGCAGGCC
ACGGCTCCATGCTTCTGTATTCTCTACTTCATCTTTATGGGTATGAGTCT
GTTTCACTTGACGACATCAAACGATTTCGGAAGCTTAATTCAACCACCCC
GGGGCATCCAGAATGTGTGGAAACGGCCGGTGTTGAAGTTTGTACAGGCC
CATTAGGACAAGGCATTTCCAATGCAGTGGGAATGGCCATAGCGGAAGCT
CACGTCGCCGCCACTTACAATCGGCCAGGATTTCCGTTAGTCGATAATTA
CACATTCTGCATAGCTGGAGATGGATGTATGATGGAAGGGATTTCAGCCG
AAGCATGTTCATTGGCAGGTCACCTCAAGCTCGGGAAACTCATTGTTCTC
TACGATGACAACAAAATCTCCATCGACGGTTCGACGGACATTGCTTTCAC
GGAAGACGTGAGCAAGCGCTTCGAAGCCTATGGATGGCAGGTGATCCATG
TTGGTGAGGGCACTACTGACGTCACAGCCATTGATAGAGCGATTTTGTCT
GCCAAAAGATGCACGATCAAACCGACTCTGATAAGGGTAAGCACTGTAAT
CGGATACGGCGGCCCAAACGTACAAAATACTGCTAAGGCGCACGGAGCTG
CCCTCGGAACGGATGAAACTACCGCCGCCCGAAAAGCTTTGTCGTATGAG
TACGAACCCTTTGAAATCCCTGCTCCCACACAGGAGCATCTACGGCGAAA
ACTCGAGGCCGGAATTTCTCAGGAAGCTTCCTGGAAATGGATTCTTGAAG
AATACAAAACTGTGTACCCTAAGCTTCACGAACAATTCATCGAACACGTT
GTGAATGGCGATGTCTCGAAAGCGGTGACCACAGCTTTACGTAAGACTGC
ACTTTCTCTTCAAAGGAAAAGTCAAGCCACTCGTAAGCATTCGAAAGCCG
TACTGAATGCCTTTGCACCACTTGTACCAAACCTCATTGGTGGTAGTGCT
GATACGAGCCCGTCAACATTGACAGACTTGGAATGCTCGAGTGTTTACAC
CTCTGAATGTAGAACGGGGAGAAACATCCGCTTCGGTGTACGCGAGCATG
CAATGGGCGCCATCAGCAACGGCATCGGACTGGCAGGTTACAACTTGCTC
CCATTCTGTTCAACATTCTTCGTATTCACAGACTACATGCGAGCTGCGAT
GAGAATGGCATCCATGAGTGAAACAGGGACTTTGTTTGTCATGACTCACG
ACTCAATCGGGCTTGGAGAAGATGGTCCCTCACACCAGCCAATCGAACAT
CTTGCTTCTTTCAGAGCAATGCCGAATCACAACGTATGGCGACCGGCTGA
CGGCGTGGAGACAGCAGCGGCATATGCCAGAGCCCTTGCCACCCGCAACT
GCCCGAGCACCCTTGTACTGTCTAGGCAGTCGACGAACTCGCTGAGAGGA
ACCGATTTCGAAGAAGCACAGAAGGGTGGCTACGTTGTGTACAACACGGC
AAACGGCAGAATGGATGGTGTTTTAATCGCAACCGGGACGGAAGTTACCA
TCGCTGTTTCTGCTGCGAAGAAGTTGGAAGAAGATGGATTCGGAGTGCGT
GTGGTTTCTCTTCCTTGTTGGGAAGTATTCGCGCAACAAGGGAGGCGCTA
CCGCAAAAATGTCATCAACCTTGAGCGAGAGTACTGCGTTGCAGTGGAGG
CTGGGAGCAGATTCGGGTGGCATCAATATGCCGATTGGTTCGTATGTGTG
GATGAGTTTGGAAGAAGCGGGAAGGGAGCAGAAGTTATGAAGCACATGGG
CATTTGCGAAGATCGCATTATTGACAGGTTTTTGGAAATGGTTGCGAATA
TGGTCGAGTAA
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protein sequence of Gchil6847.t1

>Gchil6847.t1 ID=Gchil6847.t1|Name=Gchil6847.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=737bp
MTRPVLNSATDNGGTHPLRRTRPDHISDGSLESLYQLEMSVRGSSSVSSD
EESTPDKSMLSNYSTTEQLALANLCINCIRFLCVDAINHANSGHPGVCMG
MATAAFVLFDNHMKFNPSNPKWLNRDRFVLSAGHGSMLLYSLLHLYGYES
VSLDDIKRFRKLNSTTPGHPECVETAGVEVCTGPLGQGISNAVGMAIAEA
HVAATYNRPGFPLVDNYTFCIAGDGCMMEGISAEACSLAGHLKLGKLIVL
YDDNKISIDGSTDIAFTEDVSKRFEAYGWQVIHVGEGTTDVTAIDRAILS
AKRCTIKPTLIRVSTVIGYGGPNVQNTAKAHGAALGTDETTAARKALSYE
YEPFEIPAPTQEHLRRKLEAGISQEASWKWILEEYKTVYPKLHEQFIEHV
VNGDVSKAVTTALRKTALSLQRKSQATRKHSKAVLNAFAPLVPNLIGGSA
DTSPSTLTDLECSSVYTSECRTGRNIRFGVREHAMGAISNGIGLAGYNLL
PFCSTFFVFTDYMRAAMRMASMSETGTLFVMTHDSIGLGEDGPSHQPIEH
LASFRAMPNHNVWRPADGVETAAAYARALATRNCPSTLVLSRQSTNSLRG
TDFEEAQKGGYVVYNTANGRMDGVLIATGTEVTIAVSAAKKLEEDGFGVR
VVSLPCWEVFAQQGRRYRKNVINLEREYCVAVEAGSRFGWHQYADWFVCV
DEFGRSGKGAEVMKHMGICEDRIIDRFLEMVANMVE*
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mRNA from alignment at tig00004376_pilon:384875..387160-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6847.t1 ID=Gchil6847.t1|Name=Gchil6847.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2286bp|location=Sequence derived from alignment at tig00004376_pilon:384875..387160- (Gracilaria chilensis NLEC103_M9 male)
ATGACGCGTCCAGTCTTAAACTCCGCTACGGACAACGGGGGAACCCACCC
TCTCAGACGAACTCGCCCTGACCATATCTCAGATGGATCACTGGAATCTT
TATACCAGCTTGAAATGTCTGTCAGAGGTTCTTCATCGGTTTCATCCGAT
GAAGAATCTACTCCGGACAAATCCATGCTGTCCAACTACTCGACAACGGA
ACAACTGGCCTTGGCGAACCTATGCATAAACTGTATTCGTTTTCTATGCG
TTGATGCCATCAATCACGCAAACAGTGGTCATCCAGGAGTTTGCATGGGC
ATGGCGACAGCTGCGTTTGTGTTGTTCGACAACCATATGAAGTTCAACCC
TTCAAATCCAAAATGGCTCAACAGGGACAGATTTGTCTTATCTGCAGGCC
ACGGCTCCATGCTTCTGTATTCTCTACTTCATCTTTATGGGTATGAGTCT
GTTTCACTTGACGACATCAAACGATTTCGGAAGCTTAATTCAACCACCCC
GGGGCATCCAGAATGTGTGGAAACGGCCGGTGTTGAAGTTTGTACAGGCC
CATTAGGACAAGGCATTTCCAATGCAGTGGGAATGGCCATAGCGGAAGCT
CACGTCGCCGCCACTTACAATCGGCCAGGATTTCCGTTAGTCGATAATTA
CACATTCTGCATAGCTGGAGATGGATGTATGATGGAAGGGATTTCAGCCG
AAGCATGTTCATTGGCAGGTCACCTCAAGCTCGGGAAACTCATTGTTCTC
TACGATGACAACAAAATCTCCATCGACGGTTCGACGGACATTGCTTTCAC
GGAAGACGTGAGCAAGCGCTTCGAAGCCTATGGATGGCAGGTGATCCATG
TTGGTGAGGGCACTACTGACGTCACAGCCATTGATAGAGCGATTTTGTCT
GCCAAAAGATGCACGATCAAACCGACTCTGATAAGGGTAAGCACTGTAAT
CGGATACGGCGGCCCAAACGTACAAAATACTGCTAAGGCGCACGGAGCTG
CCCTCGGAACGGATGAAACTACCGCCGCCCGAAAAGCTTTGTCGTATGAG
TACGAACCCTTTGAAATCCCTGCTCCCACACAGGAGCATCTACGGCGAAA
ACTCGAGGCCGGAATTTCTCAGGAAGCTTCCTGGAAATGGATTCTTGAAG
AATACAAAACTGTGTACCCTAAGCTTCACGAACAATTCATCGAACACGTT
GTGAATGGCGATGTCTCGAAAGCGGTGACCACAGCTTTACGTAAGACTGC
ACTTTCTCTTCAAAGGAAAAGTCAAGCCACTCGTAAGCATTCGAAAGCCG
TACTGAATGCCTTTGCACCACTTGTACCAAACCTCATTGGTGGTAGTGCT
GATACGAGCCCGTCAACATTGACAGACTTGGAATGCTCGAGTGTTTACAC
CTCTGAATGTAGAACGGGGAGAAACATCCGCTTCGGTGTACGCGAGCATG
CAATGGGCGCCATCAGCAACGGCATCGGACTGGCAGGTTACAACTTGCTC
CCATTCTGTTCAACATTCTTCGTATTCACAGGTACGGTCTCGTTTCCAGC
CTTGACATTTTCTGCGTACATTACATTTGAAAACTCTTTCTAACTCAAGC
GTTCAGACTACATGCGAGCTGCGATGAGAATGGCATCCATGAGTGAAACA
GGGACTTTGTTTGTCATGACTCACGACTCAATCGGGCTTGGAGAAGATGG
TCCCTCACACCAGCCAATCGAACATCTTGCTTCTTTCAGAGCAATGCCGA
ATCACAACGTATGGCGACCGGCTGACGGCGTGGAGACAGCAGCGGCATAT
GCCAGAGCCCTTGCCACCCGCAACTGCCCGAGCACCCTTGTACTGTCTAG
GCAGTCGACGAACTCGCTGAGAGGAACCGATTTCGAAGAAGCACAGAAGG
GTGGCTACGTTGTGTACAACACGGCAAACGGCAGAATGGATGGTGTTTTA
ATCGCAACCGGGACGGAAGTTACCATCGCTGTTTCTGCTGCGAAGAAGTT
GGAAGAAGATGGATTCGGAGTGCGTGTGGTTTCTCTTCCTTGTTGGGAAG
TATTCGCGCAACAAGGGAGGCGCTACCGCAAAAATGTCATCAACCTTGAG
CGAGAGTACTGCGTTGCAGTGGAGGCTGGGAGCAGATTCGGGTGGCATCA
ATATGCCGATTGGTTCGTATGTGTGGATGAGTTTGGAAGAAGCGGGAAGG
GAGCAGAAGTTATGAAGCACATGGGCATTTGCGAAGATCGCATTATTGAC
AGGTTTTTGGAAATGGTTGCGAATATGGTCGAGTAA
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Coding sequence (CDS) from alignment at tig00004376_pilon:384875..387160-

>Gchil6847.t1 ID=Gchil6847.t1|Name=Gchil6847.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2211bp|location=Sequence derived from alignment at tig00004376_pilon:384875..387160- (Gracilaria chilensis NLEC103_M9 male)
ATGACGCGTCCAGTCTTAAACTCCGCTACGGACAACGGGGGAACCCACCC
TCTCAGACGAACTCGCCCTGACCATATCTCAGATGGATCACTGGAATCTT
TATACCAGCTTGAAATGTCTGTCAGAGGTTCTTCATCGGTTTCATCCGAT
GAAGAATCTACTCCGGACAAATCCATGCTGTCCAACTACTCGACAACGGA
ACAACTGGCCTTGGCGAACCTATGCATAAACTGTATTCGTTTTCTATGCG
TTGATGCCATCAATCACGCAAACAGTGGTCATCCAGGAGTTTGCATGGGC
ATGGCGACAGCTGCGTTTGTGTTGTTCGACAACCATATGAAGTTCAACCC
TTCAAATCCAAAATGGCTCAACAGGGACAGATTTGTCTTATCTGCAGGCC
ACGGCTCCATGCTTCTGTATTCTCTACTTCATCTTTATGGGTATGAGTCT
GTTTCACTTGACGACATCAAACGATTTCGGAAGCTTAATTCAACCACCCC
GGGGCATCCAGAATGTGTGGAAACGGCCGGTGTTGAAGTTTGTACAGGCC
CATTAGGACAAGGCATTTCCAATGCAGTGGGAATGGCCATAGCGGAAGCT
CACGTCGCCGCCACTTACAATCGGCCAGGATTTCCGTTAGTCGATAATTA
CACATTCTGCATAGCTGGAGATGGATGTATGATGGAAGGGATTTCAGCCG
AAGCATGTTCATTGGCAGGTCACCTCAAGCTCGGGAAACTCATTGTTCTC
TACGATGACAACAAAATCTCCATCGACGGTTCGACGGACATTGCTTTCAC
GGAAGACGTGAGCAAGCGCTTCGAAGCCTATGGATGGCAGGTGATCCATG
TTGGTGAGGGCACTACTGACGTCACAGCCATTGATAGAGCGATTTTGTCT
GCCAAAAGATGCACGATCAAACCGACTCTGATAAGGGTAAGCACTGTAAT
CGGATACGGCGGCCCAAACGTACAAAATACTGCTAAGGCGCACGGAGCTG
CCCTCGGAACGGATGAAACTACCGCCGCCCGAAAAGCTTTGTCGTATGAG
TACGAACCCTTTGAAATCCCTGCTCCCACACAGGAGCATCTACGGCGAAA
ACTCGAGGCCGGAATTTCTCAGGAAGCTTCCTGGAAATGGATTCTTGAAG
AATACAAAACTGTGTACCCTAAGCTTCACGAACAATTCATCGAACACGTT
GTGAATGGCGATGTCTCGAAAGCGGTGACCACAGCTTTACGTAAGACTGC
ACTTTCTCTTCAAAGGAAAAGTCAAGCCACTCGTAAGCATTCGAAAGCCG
TACTGAATGCCTTTGCACCACTTGTACCAAACCTCATTGGTGGTAGTGCT
GATACGAGCCCGTCAACATTGACAGACTTGGAATGCTCGAGTGTTTACAC
CTCTGAATGTAGAACGGGGAGAAACATCCGCTTCGGTGTACGCGAGCATG
CAATGGGCGCCATCAGCAACGGCATCGGACTGGCAGGTTACAACTTGCTC
CCATTCTGTTCAACATTCTTCGTATTCACAGACTACATGCGAGCTGCGAT
GAGAATGGCATCCATGAGTGAAACAGGGACTTTGTTTGTCATGACTCACG
ACTCAATCGGGCTTGGAGAAGATGGTCCCTCACACCAGCCAATCGAACAT
CTTGCTTCTTTCAGAGCAATGCCGAATCACAACGTATGGCGACCGGCTGA
CGGCGTGGAGACAGCAGCGGCATATGCCAGAGCCCTTGCCACCCGCAACT
GCCCGAGCACCCTTGTACTGTCTAGGCAGTCGACGAACTCGCTGAGAGGA
ACCGATTTCGAAGAAGCACAGAAGGGTGGCTACGTTGTGTACAACACGGC
AAACGGCAGAATGGATGGTGTTTTAATCGCAACCGGGACGGAAGTTACCA
TCGCTGTTTCTGCTGCGAAGAAGTTGGAAGAAGATGGATTCGGAGTGCGT
GTGGTTTCTCTTCCTTGTTGGGAAGTATTCGCGCAACAAGGGAGGCGCTA
CCGCAAAAATGTCATCAACCTTGAGCGAGAGTACTGCGTTGCAGTGGAGG
CTGGGAGCAGATTCGGGTGGCATCAATATGCCGATTGGTTCGTATGTGTG
GATGAGTTTGGAAGAAGCGGGAAGGGAGCAGAAGTTATGAAGCACATGGG
CATTTGCGAAGATCGCATTATTGACAGGTTTTTGGAAATGGTTGCGAATA
TGGTCGAGTAA
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