Gchil6881.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6881.t1
Unique NameGchil6881.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:580615..581786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog429009.Adeg_1292
Preferred namerluB
PFAMsPseudoU_synth_2,S4
Max annot lvl186801|Clostridia
KEGG koko:K06178,ko:K06183
Evalue2.86e-33
EggNOG OGsCOG1187@1|root,COG1187@2|Bacteria,1TP68@1239|Firmicutes,248UG@186801|Clostridia,42G4B@68295|Thermoanaerobacterales
EC5.4.99.19,5.4.99.22
DescriptionBelongs to the pseudouridine synthase RsuA family
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6881Gchil6881Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 580615..581786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6881.t1Gchil6881.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 580615..581786 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6881.t1.stop1Gchil6881.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 580615..580617 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6881.t1.CDS1Gchil6881.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 580615..580908 -
Gchil6881.t1.CDS2Gchil6881.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 580971..581786 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6881.t1.exon1Gchil6881.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 580615..580908 -
Gchil6881.t1.exon2Gchil6881.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 580971..581786 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6881.t1.intron1Gchil6881.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 580909..580970 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6881.t1.start1Gchil6881.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 581784..581786 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6881.t1 ID=Gchil6881.t1|Name=Gchil6881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=370bp
MDDFMLRFSRSTSTNPYALLQRKTMTSGFRHQYASGFVIPFPNASKSSCS
FTGELLTKKRQSCSYPGYQYGEQSVSRISLLRSTPMVRLSDRAGNKKRAR
PIQQSKNEAQRLQKVLAQMGFASRRGAEKLIESGSVRVNNRSVTKSGMLV
VPGKDIIHVDGKLAKLQTPVWVAVHKPRGMNSLPSTSRRSVDSEFPSELR
KGLIPVAGIEEDASGLLILSNDRKAVAQLNNPDCNLVIEWVVDCYGPVSN
SKVIELQRGVVLEGEKDVFRPKNLECQGSARIELSPREKTILTRFVVRVR
EHRRQLMSRFFSSVGLTVVRMSRRSFGPVLLSPLRRGSFRQLTPNEIKAM
IRGVKESTVKKERRHRKIA*
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spliced messenger RNA

>Gchil6881.t1 ID=Gchil6881.t1|Name=Gchil6881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00004376_pilon:580615..581786- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGATTTCATGTTGAGATTCTCGCGCAGCACAAGTACAAACCCATA
TGCTCTTTTACAGCGCAAGACAATGACTTCTGGATTCCGTCATCAGTATG
CATCCGGATTTGTCATTCCATTTCCCAACGCCTCGAAATCTTCTTGTTCA
TTTACAGGAGAATTACTGACGAAGAAAAGACAGAGCTGCTCTTATCCAGG
ATATCAGTACGGGGAGCAATCAGTGTCGCGTATCTCACTGCTTCGTTCTA
CGCCCATGGTTCGTTTATCGGATAGAGCAGGAAACAAAAAAAGAGCTCGA
CCGATTCAGCAGTCGAAAAATGAAGCACAGCGACTGCAAAAGGTTCTTGC
ACAAATGGGGTTCGCATCTCGACGAGGTGCAGAAAAATTGATCGAAAGTG
GATCTGTCCGTGTCAATAACAGGAGTGTTACGAAAAGCGGTATGTTGGTT
GTGCCGGGAAAAGACATTATTCATGTTGATGGAAAGCTAGCGAAACTCCA
AACGCCAGTTTGGGTTGCAGTACACAAACCACGCGGGATGAATTCACTCC
CATCGACGAGCAGGCGCTCTGTTGACTCTGAGTTCCCCTCAGAACTTCGA
AAAGGGCTTATTCCCGTTGCTGGAATTGAAGAAGATGCCAGTGGCTTGCT
CATTCTTAGCAATGACCGTAAGGCTGTTGCTCAACTAAACAACCCAGACT
GTAACTTAGTCATAGAATGGGTCGTCGATTGCTATGGTCCGGTTTCTAAT
TCCAAAGTTATCGAATTGCAACGCGGGGTCGTTTTGGAAGGGGAAAAGGA
CGTCTTTAGACCGAAAAATTTGGAATGTCAAGGAAGTGCGCGTATTGAAT
TGAGTCCACGAGAGAAGACCATCTTGACACGCTTTGTGGTTCGTGTTCGA
GAGCATCGTCGCCAACTCATGAGTCGCTTCTTTTCATCTGTTGGACTCAC
AGTAGTGCGAATGAGTCGACGTTCATTTGGACCAGTTCTTCTATCTCCTC
TGAGAAGAGGGAGCTTTCGCCAGTTGACGCCCAACGAGATAAAAGCGATG
ATAAGAGGTGTCAAAGAATCAACCGTCAAGAAAGAACGTCGTCACAGAAA
AATTGCATAG
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protein sequence of Gchil6881.t1

>Gchil6881.t1 ID=Gchil6881.t1|Name=Gchil6881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=370bp
MDDFMLRFSRSTSTNPYALLQRKTMTSGFRHQYASGFVIPFPNASKSSCS
FTGELLTKKRQSCSYPGYQYGEQSVSRISLLRSTPMVRLSDRAGNKKRAR
PIQQSKNEAQRLQKVLAQMGFASRRGAEKLIESGSVRVNNRSVTKSGMLV
VPGKDIIHVDGKLAKLQTPVWVAVHKPRGMNSLPSTSRRSVDSEFPSELR
KGLIPVAGIEEDASGLLILSNDRKAVAQLNNPDCNLVIEWVVDCYGPVSN
SKVIELQRGVVLEGEKDVFRPKNLECQGSARIELSPREKTILTRFVVRVR
EHRRQLMSRFFSSVGLTVVRMSRRSFGPVLLSPLRRGSFRQLTPNEIKAM
IRGVKESTVKKERRHRKIA*
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mRNA from alignment at tig00004376_pilon:580615..581786-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6881.t1 ID=Gchil6881.t1|Name=Gchil6881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1172bp|location=Sequence derived from alignment at tig00004376_pilon:580615..581786- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGATTTCATGTTGAGATTCTCGCGCAGCACAAGTACAAACCCATA
TGCTCTTTTACAGCGCAAGACAATGACTTCTGGATTCCGTCATCAGTATG
CATCCGGATTTGTCATTCCATTTCCCAACGCCTCGAAATCTTCTTGTTCA
TTTACAGGAGAATTACTGACGAAGAAAAGACAGAGCTGCTCTTATCCAGG
ATATCAGTACGGGGAGCAATCAGTGTCGCGTATCTCACTGCTTCGTTCTA
CGCCCATGGTTCGTTTATCGGATAGAGCAGGAAACAAAAAAAGAGCTCGA
CCGATTCAGCAGTCGAAAAATGAAGCACAGCGACTGCAAAAGGTTCTTGC
ACAAATGGGGTTCGCATCTCGACGAGGTGCAGAAAAATTGATCGAAAGTG
GATCTGTCCGTGTCAATAACAGGAGTGTTACGAAAAGCGGTATGTTGGTT
GTGCCGGGAAAAGACATTATTCATGTTGATGGAAAGCTAGCGAAACTCCA
AACGCCAGTTTGGGTTGCAGTACACAAACCACGCGGGATGAATTCACTCC
CATCGACGAGCAGGCGCTCTGTTGACTCTGAGTTCCCCTCAGAACTTCGA
AAAGGGCTTATTCCCGTTGCTGGAATTGAAGAAGATGCCAGTGGCTTGCT
CATTCTTAGCAATGACCGTAAGGCTGTTGCTCAACTAAACAACCCAGACT
GTAACTTAGTCATAGAATGGGTCGTCGATTGCTATGGTCCGGTTTCTAAT
TCCAAAGTTATCGAATTGCAACGCGGGGTCGTTTTGGAAGGGGAAAAGGA
CGTCTTTAGACCGAAAGTAAGTGAAGATTTCCACCTTTGTTATGGTTTCG
TATCAATATTGCTGACTTCTTTGTGCAGAATTTGGAATGTCAAGGAAGTG
CGCGTATTGAATTGAGTCCACGAGAGAAGACCATCTTGACACGCTTTGTG
GTTCGTGTTCGAGAGCATCGTCGCCAACTCATGAGTCGCTTCTTTTCATC
TGTTGGACTCACAGTAGTGCGAATGAGTCGACGTTCATTTGGACCAGTTC
TTCTATCTCCTCTGAGAAGAGGGAGCTTTCGCCAGTTGACGCCCAACGAG
ATAAAAGCGATGATAAGAGGTGTCAAAGAATCAACCGTCAAGAAAGAACG
TCGTCACAGAAAAATTGCATAG
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Coding sequence (CDS) from alignment at tig00004376_pilon:580615..581786-

>Gchil6881.t1 ID=Gchil6881.t1|Name=Gchil6881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00004376_pilon:580615..581786- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGATTTCATGTTGAGATTCTCGCGCAGCACAAGTACAAACCCATA
TGCTCTTTTACAGCGCAAGACAATGACTTCTGGATTCCGTCATCAGTATG
CATCCGGATTTGTCATTCCATTTCCCAACGCCTCGAAATCTTCTTGTTCA
TTTACAGGAGAATTACTGACGAAGAAAAGACAGAGCTGCTCTTATCCAGG
ATATCAGTACGGGGAGCAATCAGTGTCGCGTATCTCACTGCTTCGTTCTA
CGCCCATGGTTCGTTTATCGGATAGAGCAGGAAACAAAAAAAGAGCTCGA
CCGATTCAGCAGTCGAAAAATGAAGCACAGCGACTGCAAAAGGTTCTTGC
ACAAATGGGGTTCGCATCTCGACGAGGTGCAGAAAAATTGATCGAAAGTG
GATCTGTCCGTGTCAATAACAGGAGTGTTACGAAAAGCGGTATGTTGGTT
GTGCCGGGAAAAGACATTATTCATGTTGATGGAAAGCTAGCGAAACTCCA
AACGCCAGTTTGGGTTGCAGTACACAAACCACGCGGGATGAATTCACTCC
CATCGACGAGCAGGCGCTCTGTTGACTCTGAGTTCCCCTCAGAACTTCGA
AAAGGGCTTATTCCCGTTGCTGGAATTGAAGAAGATGCCAGTGGCTTGCT
CATTCTTAGCAATGACCGTAAGGCTGTTGCTCAACTAAACAACCCAGACT
GTAACTTAGTCATAGAATGGGTCGTCGATTGCTATGGTCCGGTTTCTAAT
TCCAAAGTTATCGAATTGCAACGCGGGGTCGTTTTGGAAGGGGAAAAGGA
CGTCTTTAGACCGAAAAATTTGGAATGTCAAGGAAGTGCGCGTATTGAAT
TGAGTCCACGAGAGAAGACCATCTTGACACGCTTTGTGGTTCGTGTTCGA
GAGCATCGTCGCCAACTCATGAGTCGCTTCTTTTCATCTGTTGGACTCAC
AGTAGTGCGAATGAGTCGACGTTCATTTGGACCAGTTCTTCTATCTCCTC
TGAGAAGAGGGAGCTTTCGCCAGTTGACGCCCAACGAGATAAAAGCGATG
ATAAGAGGTGTCAAAGAATCAACCGTCAAGAAAGAACGTCGTCACAGAAA
AATTGCATAG
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