Gchil6872.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6872.t1
Unique NameGchil6872.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:478794..479816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15717039
PFAMsRVT_1,gag-asp_proteas,rve
Max annot lvl33208|Metazoa
Evalue6.41e-19
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa
DescriptionK02A2.6-like
COG categoryOU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6872Gchil6872Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 478794..479816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6872.t1Gchil6872.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 478794..479816 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6872.t1.stop1Gchil6872.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 478794..478796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6872.t1.CDS1Gchil6872.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 478794..479078 -
Gchil6872.t1.CDS2Gchil6872.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 479190..479816 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6872.t1.exon1Gchil6872.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 478794..479078 -
Gchil6872.t1.exon2Gchil6872.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 479190..479816 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6872.t1.intron1Gchil6872.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 479079..479189 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6872.t1.start1Gchil6872.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 479814..479816 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6872.t1 ID=Gchil6872.t1|Name=Gchil6872.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=304bp
MDIKGIVPLYLQVGKFKVRTWFLVCPNLGAEAILGTSFIDRYIKAIYPGL
NKVAFYRASSDSIIGSALVPEANRKRAVVCENTKSNKVRLSTAITIPPMT
QIALSVHSQSPGLVTIQNHPETVLKHLTLTAHGVMDILPNRSFFVTISNF
RDKPVRLPKGTVIGITLLAPVAIMEAQMDNLATPTPDEDVDSWEGRVAIR
AALESYRPQHPYRTDLKGREIGADQIDKMRKAQVIEPAPPTQSQFPSPLV
LVAKKDGSVRFYVDYRKLNAVTKRDSYPIPRMDDCLDSLSETVVFTTLEA
NSG*
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spliced messenger RNA

>Gchil6872.t1 ID=Gchil6872.t1|Name=Gchil6872.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00004376_pilon:478794..479816- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATTAAAGGGATAGTCCCACTTTACCTCCAGGTAGGAAAATTCAA
AGTCCGCACGTGGTTCCTTGTATGTCCTAACTTGGGCGCTGAAGCAATCC
TAGGGACCTCCTTTATCGATCGATACATTAAGGCCATTTATCCAGGCCTT
AACAAAGTCGCATTCTACCGCGCATCTTCCGACTCCATAATTGGTTCCGC
CTTAGTGCCAGAAGCGAACCGGAAACGAGCAGTTGTTTGCGAAAACACAA
AGTCCAATAAGGTTCGCCTGTCAACGGCCATAACGATACCGCCGATGACC
CAAATCGCTTTATCGGTCCATTCCCAGTCCCCAGGTCTCGTAACGATTCA
GAACCACCCGGAAACGGTTCTGAAGCACCTTACCTTGACGGCCCATGGAG
TAATGGACATCCTACCCAACAGGTCCTTCTTTGTCACAATCAGCAACTTC
CGAGATAAACCCGTGCGGTTACCTAAAGGTACCGTGATTGGTATCACTTT
ACTCGCGCCCGTGGCCATTATGGAGGCCCAAATGGATAATCTTGCGACGC
CAACTCCCGACGAGGACGTCGACTCTTGGGAGGGGAGGGTCGCTATCCGC
GCGGCATTAGAATCCTATAGGCCCCAGCACCCATACCGTACAGACCTTAA
GGGTAGGGAAATTGGCGCCGACCAGATCGACAAGATGCGCAAAGCCCAAG
TCATAGAGCCGGCGCCTCCAACCCAATCACAATTTCCAAGTCCCCTTGTC
CTTGTGGCGAAGAAAGATGGCTCCGTCAGGTTTTATGTCGACTACAGGAA
GCTGAACGCAGTAACCAAGAGGGACTCATACCCGATACCCCGCATGGACG
ACTGTCTGGATTCCTTAAGCGAAACTGTCGTATTTACTACACTGGAAGCT
AACTCTGGATAG
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protein sequence of Gchil6872.t1

>Gchil6872.t1 ID=Gchil6872.t1|Name=Gchil6872.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=304bp
MDIKGIVPLYLQVGKFKVRTWFLVCPNLGAEAILGTSFIDRYIKAIYPGL
NKVAFYRASSDSIIGSALVPEANRKRAVVCENTKSNKVRLSTAITIPPMT
QIALSVHSQSPGLVTIQNHPETVLKHLTLTAHGVMDILPNRSFFVTISNF
RDKPVRLPKGTVIGITLLAPVAIMEAQMDNLATPTPDEDVDSWEGRVAIR
AALESYRPQHPYRTDLKGREIGADQIDKMRKAQVIEPAPPTQSQFPSPLV
LVAKKDGSVRFYVDYRKLNAVTKRDSYPIPRMDDCLDSLSETVVFTTLEA
NSG*
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mRNA from alignment at tig00004376_pilon:478794..479816-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6872.t1 ID=Gchil6872.t1|Name=Gchil6872.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00004376_pilon:478794..479816- (Gracilaria chilensis NLEC103_M9 male)
ATGGACATTAAAGGGATAGTCCCACTTTACCTCCAGGTAGGAAAATTCAA
AGTCCGCACGTGGTTCCTTGTATGTCCTAACTTGGGCGCTGAAGCAATCC
TAGGGACCTCCTTTATCGATCGATACATTAAGGCCATTTATCCAGGCCTT
AACAAAGTCGCATTCTACCGCGCATCTTCCGACTCCATAATTGGTTCCGC
CTTAGTGCCAGAAGCGAACCGGAAACGAGCAGTTGTTTGCGAAAACACAA
AGTCCAATAAGGTTCGCCTGTCAACGGCCATAACGATACCGCCGATGACC
CAAATCGCTTTATCGGTCCATTCCCAGTCCCCAGGTCTCGTAACGATTCA
GAACCACCCGGAAACGGTTCTGAAGCACCTTACCTTGACGGCCCATGGAG
TAATGGACATCCTACCCAACAGGTCCTTCTTTGTCACAATCAGCAACTTC
CGAGATAAACCCGTGCGGTTACCTAAAGGTACCGTGATTGGTATCACTTT
ACTCGCGCCCGTGGCCATTATGGAGGCCCAAATGGATAATCTTGCGACGC
CAACTCCCGACGAGGACGTCGACTCTTGGGAGGGGAGGGTCGCTATCCGC
GCGGCATTAGAATCCTATAGGCCCCAGGTAATTGATCTCCTCACGGAATA
CCAGGCCATGTGGTCAGGTAGATTGGGCAAAATCAGAACCACCTCACACC
GCATTGACCTTCAGGATGATGATAGACCACTGTTTTAGCACCCATACCGT
ACAGACCTTAAGGGTAGGGAAATTGGCGCCGACCAGATCGACAAGATGCG
CAAAGCCCAAGTCATAGAGCCGGCGCCTCCAACCCAATCACAATTTCCAA
GTCCCCTTGTCCTTGTGGCGAAGAAAGATGGCTCCGTCAGGTTTTATGTC
GACTACAGGAAGCTGAACGCAGTAACCAAGAGGGACTCATACCCGATACC
CCGCATGGACGACTGTCTGGATTCCTTAAGCGAAACTGTCGTATTTACTA
CACTGGAAGCTAACTCTGGATAG
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Coding sequence (CDS) from alignment at tig00004376_pilon:478794..479816-

>Gchil6872.t1 ID=Gchil6872.t1|Name=Gchil6872.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00004376_pilon:478794..479816- (Gracilaria chilensis NLEC103_M9 male)
ATGGACATTAAAGGGATAGTCCCACTTTACCTCCAGGTAGGAAAATTCAA
AGTCCGCACGTGGTTCCTTGTATGTCCTAACTTGGGCGCTGAAGCAATCC
TAGGGACCTCCTTTATCGATCGATACATTAAGGCCATTTATCCAGGCCTT
AACAAAGTCGCATTCTACCGCGCATCTTCCGACTCCATAATTGGTTCCGC
CTTAGTGCCAGAAGCGAACCGGAAACGAGCAGTTGTTTGCGAAAACACAA
AGTCCAATAAGGTTCGCCTGTCAACGGCCATAACGATACCGCCGATGACC
CAAATCGCTTTATCGGTCCATTCCCAGTCCCCAGGTCTCGTAACGATTCA
GAACCACCCGGAAACGGTTCTGAAGCACCTTACCTTGACGGCCCATGGAG
TAATGGACATCCTACCCAACAGGTCCTTCTTTGTCACAATCAGCAACTTC
CGAGATAAACCCGTGCGGTTACCTAAAGGTACCGTGATTGGTATCACTTT
ACTCGCGCCCGTGGCCATTATGGAGGCCCAAATGGATAATCTTGCGACGC
CAACTCCCGACGAGGACGTCGACTCTTGGGAGGGGAGGGTCGCTATCCGC
GCGGCATTAGAATCCTATAGGCCCCAGCACCCATACCGTACAGACCTTAA
GGGTAGGGAAATTGGCGCCGACCAGATCGACAAGATGCGCAAAGCCCAAG
TCATAGAGCCGGCGCCTCCAACCCAATCACAATTTCCAAGTCCCCTTGTC
CTTGTGGCGAAGAAAGATGGCTCCGTCAGGTTTTATGTCGACTACAGGAA
GCTGAACGCAGTAACCAAGAGGGACTCATACCCGATACCCCGCATGGACG
ACTGTCTGGATTCCTTAAGCGAAACTGTCGTATTTACTACACTGGAAGCT
AACTCTGGATAG
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