Gchil6896.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6896.t1
Unique Name	Gchil6896.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	732

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004376_pilon	contig	tig00004376_pilon:617388..619583 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	181119.XP_005518426.1
Preferred name	HBS1L
PFAMs	GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3,HBS1_N
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K14416
KEGG Pathway	ko03015,ko05134,map03015,map05134
GOs	GO:0000166,GO:0000288,GO:0000291,GO:0000956,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019439,GO:0019538,GO:0023052,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034645,GO:0034655,GO:0035639,GO:0036094,GO:0040029,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043603,GO:0043604,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue	2.18e-81
EggNOG OGs	COG5256@1\|root,KOG0458@2759\|Eukaryota,38BRZ@33154\|Opisthokonta,3BIVK@33208\|Metazoa,3CTGM@33213\|Bilateria,4851J@7711\|Chordata,491KD@7742\|Vertebrata,4GP0C@8782\|Aves
Description	HBS1 N-terminus
COG category	J
BRITE	ko00000,ko00001,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6896	Gchil6896	Gracilaria chilensis NLEC103_M9 male	gene	tig00004376_pilon 617388..619583 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6896.t1.stop1	Gchil6896.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004376_pilon 617388..617390 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6896.t1.CDS1	Gchil6896.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004376_pilon 617388..619583 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6896.t1.exon1	Gchil6896.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004376_pilon 617388..619583 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6896.t1.start1	Gchil6896.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004376_pilon 619581..619583 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6896.t1	Gchil6896.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004376_pilon 617388..619583 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004376_pilon:617388..619583-
coding sequence from alignment at tig00004376_pilon:617388..619583-

mRNA sequence

>Gchil6896.t1 ID=Gchil6896.t1|Name=Gchil6896.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=732bp
MSRHRHIRNLRYEDYMDDDYYDDDYYEEEEEEETPAEYETQQSCQQQDEE
NPDELFVDLVQQFREHLQDETLSSAQVDAAIIAANYDIEQALKQIKLQKE
SSVELEGRKLSQLELKTPSDLGQLVSDGAEHQAPPLPPESEVNVNDLELA
GFSTVVHLTPPSQWTTKPYKFEDPSPDDVIFAKQKKASQRVQSIRFPKAS
TLLGSSSKSVTVRGKAVNEKTPTKATAKLSNSKARPQSKESRPPSKSPRK
QKSDPKNGTATEKPPPDTQRTKKIDFSQKVKDGSTSIPVVIAGHVDAGKS
TLLCQLLKQVKSTTSAKRRKTPQNIAWDADEDAVERERGVTIDIATRVFE
SQGRKYALIDAPGHRDFVPAMILGAAQASAAILVVDASPGEFESGFSENG
QTREHALVLKALGISRLIVVVNKMDTITFKKERYMEVTNKIQSYLGNNGW
KTSKSVSFVAASGREGINLTSSPNRNHPLTQWYKGKCLLGELEQLETLSM
STIQEHSQKPTRFVVSDFFRSASLGGDGAVTGRLICGSIAQKDRLSLCPG
GSTVSVKAVELASKERAQVAVAGVDCLPVSLGLQNLTDGVLISPGNVLCD
PRKPVTVATQFRAQLITTSAKTVLLQGTCGVLHIGGGAEAASITRLIEFV
QTKRGIKGGKKKIPRRLIKGDSAIVEFKCDRGVAMEKAADVKGLGRFAFR
QNGHTLAVGLVQEIIENAENVVQDKAPDSAN*

spliced messenger RNA

>Gchil6896.t1 ID=Gchil6896.t1|Name=Gchil6896.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2196bp|location=Sequence derived from alignment at tig00004376_pilon:617388..619583- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGTCATCGGCACATCCGTAATTTGCGATATGAAGATTATATGGA
CGATGATTACTACGATGACGATTACTATGAAGAAGAAGAAGAAGAAGAAA
CCCCGGCTGAATACGAGACGCAGCAGTCCTGCCAACAACAGGATGAGGAG
AACCCCGATGAACTCTTCGTCGACCTTGTCCAGCAGTTTAGAGAGCATCT
GCAAGACGAAACTCTATCTTCTGCCCAAGTAGATGCTGCAATCATTGCAG
CGAACTACGATATAGAGCAAGCTCTTAAACAAATCAAGCTCCAGAAGGAA
AGTTCAGTTGAACTTGAGGGAAGAAAGCTGTCTCAACTCGAATTAAAGAC
TCCTTCAGATCTAGGGCAACTCGTTTCAGATGGAGCAGAACACCAGGCGC
CACCCCTCCCGCCTGAATCCGAAGTGAATGTCAATGATCTTGAACTCGCG
GGGTTCTCAACTGTCGTACATTTAACGCCACCATCACAATGGACAACGAA
ACCGTACAAGTTTGAGGACCCATCACCAGATGATGTTATTTTCGCCAAGC
AAAAGAAAGCTTCTCAGCGAGTACAGTCCATACGATTTCCTAAAGCTTCT
ACACTTCTTGGTTCCTCTTCAAAGTCCGTCACTGTGAGGGGTAAGGCTGT
GAATGAAAAAACTCCAACAAAGGCCACAGCCAAGCTGTCAAACTCTAAGG
CAAGGCCCCAATCCAAAGAAAGCAGGCCGCCGTCGAAATCACCAAGAAAG
CAAAAGTCAGATCCGAAGAATGGTACCGCGACAGAAAAGCCACCCCCGGA
TACGCAACGCACAAAGAAAATTGACTTTTCGCAGAAAGTGAAGGACGGTT
CAACTTCTATTCCGGTAGTAATTGCTGGTCATGTTGATGCGGGGAAGAGT
ACCCTACTATGCCAACTACTGAAGCAAGTCAAATCCACCACGTCAGCAAA
GAGACGAAAAACACCACAAAACATTGCCTGGGATGCTGATGAAGATGCAG
TAGAACGTGAGAGAGGAGTAACAATAGATATAGCAACAAGAGTCTTTGAA
AGTCAGGGCCGAAAGTACGCGCTCATCGATGCACCTGGTCATCGCGATTT
CGTTCCTGCGATGATTTTGGGAGCAGCTCAAGCTTCTGCCGCTATATTGG
TAGTTGATGCTTCTCCAGGTGAGTTTGAATCTGGTTTTTCAGAAAACGGA
CAAACACGAGAACACGCACTGGTTTTGAAAGCTCTAGGAATCAGCAGGTT
GATTGTGGTTGTTAATAAAATGGATACGATCACGTTCAAGAAAGAACGTT
ATATGGAAGTGACGAACAAGATTCAGAGTTATCTTGGAAATAATGGGTGG
AAAACTTCGAAGTCCGTATCTTTCGTCGCGGCTTCAGGGAGGGAAGGTAT
CAATCTGACTTCTTCCCCAAATAGGAACCACCCCTTGACCCAGTGGTACA
AGGGGAAGTGTCTGCTTGGAGAGCTTGAACAGCTGGAAACCCTCAGCATG
TCAACCATTCAAGAACACAGTCAGAAACCGACTCGTTTTGTCGTTTCGGA
CTTTTTTAGAAGTGCCTCCCTTGGGGGGGACGGTGCGGTCACTGGTCGCC
TCATTTGTGGTTCCATTGCTCAAAAAGATCGCCTTTCTCTTTGCCCTGGA
GGTTCAACAGTGTCTGTCAAAGCAGTAGAACTGGCATCGAAGGAAAGAGC
GCAAGTAGCTGTTGCAGGTGTGGATTGTCTGCCTGTATCACTTGGTCTGC
AGAATCTCACTGACGGTGTTCTGATATCTCCTGGCAACGTTCTGTGTGAC
CCCCGAAAACCGGTAACTGTAGCCACACAGTTTCGTGCCCAGTTGATCAC
AACATCGGCCAAAACAGTCCTACTACAAGGTACGTGCGGGGTATTACACA
TAGGGGGCGGAGCCGAAGCAGCCTCAATCACAAGATTGATCGAATTTGTG
CAAACAAAGAGAGGAATAAAGGGTGGTAAAAAGAAAATCCCACGTCGCTT
AATTAAAGGAGATTCGGCTATTGTAGAATTTAAGTGCGATCGTGGGGTAG
CAATGGAAAAGGCTGCAGATGTGAAAGGACTTGGGAGATTTGCTTTCCGG
CAAAATGGCCACACGCTTGCAGTCGGACTTGTACAAGAAATCATAGAAAA
TGCTGAAAATGTTGTGCAGGACAAAGCTCCAGATTCTGCTAACTAA

protein sequence of Gchil6896.t1

>Gchil6896.t1 ID=Gchil6896.t1|Name=Gchil6896.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=732bp
MSRHRHIRNLRYEDYMDDDYYDDDYYEEEEEEETPAEYETQQSCQQQDEE
NPDELFVDLVQQFREHLQDETLSSAQVDAAIIAANYDIEQALKQIKLQKE
SSVELEGRKLSQLELKTPSDLGQLVSDGAEHQAPPLPPESEVNVNDLELA
GFSTVVHLTPPSQWTTKPYKFEDPSPDDVIFAKQKKASQRVQSIRFPKAS
TLLGSSSKSVTVRGKAVNEKTPTKATAKLSNSKARPQSKESRPPSKSPRK
QKSDPKNGTATEKPPPDTQRTKKIDFSQKVKDGSTSIPVVIAGHVDAGKS
TLLCQLLKQVKSTTSAKRRKTPQNIAWDADEDAVERERGVTIDIATRVFE
SQGRKYALIDAPGHRDFVPAMILGAAQASAAILVVDASPGEFESGFSENG
QTREHALVLKALGISRLIVVVNKMDTITFKKERYMEVTNKIQSYLGNNGW
KTSKSVSFVAASGREGINLTSSPNRNHPLTQWYKGKCLLGELEQLETLSM
STIQEHSQKPTRFVVSDFFRSASLGGDGAVTGRLICGSIAQKDRLSLCPG
GSTVSVKAVELASKERAQVAVAGVDCLPVSLGLQNLTDGVLISPGNVLCD
PRKPVTVATQFRAQLITTSAKTVLLQGTCGVLHIGGGAEAASITRLIEFV
QTKRGIKGGKKKIPRRLIKGDSAIVEFKCDRGVAMEKAADVKGLGRFAFR
QNGHTLAVGLVQEIIENAENVVQDKAPDSAN*

mRNA from alignment at tig00004376_pilon:617388..619583-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6896.t1 ID=Gchil6896.t1|Name=Gchil6896.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2196bp|location=Sequence derived from alignment at tig00004376_pilon:617388..619583- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGTCATCGGCACATCCGTAATTTGCGATATGAAGATTATATGGA
CGATGATTACTACGATGACGATTACTATGAAGAAGAAGAAGAAGAAGAAA
CCCCGGCTGAATACGAGACGCAGCAGTCCTGCCAACAACAGGATGAGGAG
AACCCCGATGAACTCTTCGTCGACCTTGTCCAGCAGTTTAGAGAGCATCT
GCAAGACGAAACTCTATCTTCTGCCCAAGTAGATGCTGCAATCATTGCAG
CGAACTACGATATAGAGCAAGCTCTTAAACAAATCAAGCTCCAGAAGGAA
AGTTCAGTTGAACTTGAGGGAAGAAAGCTGTCTCAACTCGAATTAAAGAC
TCCTTCAGATCTAGGGCAACTCGTTTCAGATGGAGCAGAACACCAGGCGC
CACCCCTCCCGCCTGAATCCGAAGTGAATGTCAATGATCTTGAACTCGCG
GGGTTCTCAACTGTCGTACATTTAACGCCACCATCACAATGGACAACGAA
ACCGTACAAGTTTGAGGACCCATCACCAGATGATGTTATTTTCGCCAAGC
AAAAGAAAGCTTCTCAGCGAGTACAGTCCATACGATTTCCTAAAGCTTCT
ACACTTCTTGGTTCCTCTTCAAAGTCCGTCACTGTGAGGGGTAAGGCTGT
GAATGAAAAAACTCCAACAAAGGCCACAGCCAAGCTGTCAAACTCTAAGG
CAAGGCCCCAATCCAAAGAAAGCAGGCCGCCGTCGAAATCACCAAGAAAG
CAAAAGTCAGATCCGAAGAATGGTACCGCGACAGAAAAGCCACCCCCGGA
TACGCAACGCACAAAGAAAATTGACTTTTCGCAGAAAGTGAAGGACGGTT
CAACTTCTATTCCGGTAGTAATTGCTGGTCATGTTGATGCGGGGAAGAGT
ACCCTACTATGCCAACTACTGAAGCAAGTCAAATCCACCACGTCAGCAAA
GAGACGAAAAACACCACAAAACATTGCCTGGGATGCTGATGAAGATGCAG
TAGAACGTGAGAGAGGAGTAACAATAGATATAGCAACAAGAGTCTTTGAA
AGTCAGGGCCGAAAGTACGCGCTCATCGATGCACCTGGTCATCGCGATTT
CGTTCCTGCGATGATTTTGGGAGCAGCTCAAGCTTCTGCCGCTATATTGG
TAGTTGATGCTTCTCCAGGTGAGTTTGAATCTGGTTTTTCAGAAAACGGA
CAAACACGAGAACACGCACTGGTTTTGAAAGCTCTAGGAATCAGCAGGTT
GATTGTGGTTGTTAATAAAATGGATACGATCACGTTCAAGAAAGAACGTT
ATATGGAAGTGACGAACAAGATTCAGAGTTATCTTGGAAATAATGGGTGG
AAAACTTCGAAGTCCGTATCTTTCGTCGCGGCTTCAGGGAGGGAAGGTAT
CAATCTGACTTCTTCCCCAAATAGGAACCACCCCTTGACCCAGTGGTACA
AGGGGAAGTGTCTGCTTGGAGAGCTTGAACAGCTGGAAACCCTCAGCATG
TCAACCATTCAAGAACACAGTCAGAAACCGACTCGTTTTGTCGTTTCGGA
CTTTTTTAGAAGTGCCTCCCTTGGGGGGGACGGTGCGGTCACTGGTCGCC
TCATTTGTGGTTCCATTGCTCAAAAAGATCGCCTTTCTCTTTGCCCTGGA
GGTTCAACAGTGTCTGTCAAAGCAGTAGAACTGGCATCGAAGGAAAGAGC
GCAAGTAGCTGTTGCAGGTGTGGATTGTCTGCCTGTATCACTTGGTCTGC
AGAATCTCACTGACGGTGTTCTGATATCTCCTGGCAACGTTCTGTGTGAC
CCCCGAAAACCGGTAACTGTAGCCACACAGTTTCGTGCCCAGTTGATCAC
AACATCGGCCAAAACAGTCCTACTACAAGGTACGTGCGGGGTATTACACA
TAGGGGGCGGAGCCGAAGCAGCCTCAATCACAAGATTGATCGAATTTGTG
CAAACAAAGAGAGGAATAAAGGGTGGTAAAAAGAAAATCCCACGTCGCTT
AATTAAAGGAGATTCGGCTATTGTAGAATTTAAGTGCGATCGTGGGGTAG
CAATGGAAAAGGCTGCAGATGTGAAAGGACTTGGGAGATTTGCTTTCCGG
CAAAATGGCCACACGCTTGCAGTCGGACTTGTACAAGAAATCATAGAAAA
TGCTGAAAATGTTGTGCAGGACAAAGCTCCAGATTCTGCTAACTAA

Coding sequence (CDS) from alignment at tig00004376_pilon:617388..619583-

>Gchil6896.t1 ID=Gchil6896.t1|Name=Gchil6896.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2196bp|location=Sequence derived from alignment at tig00004376_pilon:617388..619583- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGTCATCGGCACATCCGTAATTTGCGATATGAAGATTATATGGA
CGATGATTACTACGATGACGATTACTATGAAGAAGAAGAAGAAGAAGAAA
CCCCGGCTGAATACGAGACGCAGCAGTCCTGCCAACAACAGGATGAGGAG
AACCCCGATGAACTCTTCGTCGACCTTGTCCAGCAGTTTAGAGAGCATCT
GCAAGACGAAACTCTATCTTCTGCCCAAGTAGATGCTGCAATCATTGCAG
CGAACTACGATATAGAGCAAGCTCTTAAACAAATCAAGCTCCAGAAGGAA
AGTTCAGTTGAACTTGAGGGAAGAAAGCTGTCTCAACTCGAATTAAAGAC
TCCTTCAGATCTAGGGCAACTCGTTTCAGATGGAGCAGAACACCAGGCGC
CACCCCTCCCGCCTGAATCCGAAGTGAATGTCAATGATCTTGAACTCGCG
GGGTTCTCAACTGTCGTACATTTAACGCCACCATCACAATGGACAACGAA
ACCGTACAAGTTTGAGGACCCATCACCAGATGATGTTATTTTCGCCAAGC
AAAAGAAAGCTTCTCAGCGAGTACAGTCCATACGATTTCCTAAAGCTTCT
ACACTTCTTGGTTCCTCTTCAAAGTCCGTCACTGTGAGGGGTAAGGCTGT
GAATGAAAAAACTCCAACAAAGGCCACAGCCAAGCTGTCAAACTCTAAGG
CAAGGCCCCAATCCAAAGAAAGCAGGCCGCCGTCGAAATCACCAAGAAAG
CAAAAGTCAGATCCGAAGAATGGTACCGCGACAGAAAAGCCACCCCCGGA
TACGCAACGCACAAAGAAAATTGACTTTTCGCAGAAAGTGAAGGACGGTT
CAACTTCTATTCCGGTAGTAATTGCTGGTCATGTTGATGCGGGGAAGAGT
ACCCTACTATGCCAACTACTGAAGCAAGTCAAATCCACCACGTCAGCAAA
GAGACGAAAAACACCACAAAACATTGCCTGGGATGCTGATGAAGATGCAG
TAGAACGTGAGAGAGGAGTAACAATAGATATAGCAACAAGAGTCTTTGAA
AGTCAGGGCCGAAAGTACGCGCTCATCGATGCACCTGGTCATCGCGATTT
CGTTCCTGCGATGATTTTGGGAGCAGCTCAAGCTTCTGCCGCTATATTGG
TAGTTGATGCTTCTCCAGGTGAGTTTGAATCTGGTTTTTCAGAAAACGGA
CAAACACGAGAACACGCACTGGTTTTGAAAGCTCTAGGAATCAGCAGGTT
GATTGTGGTTGTTAATAAAATGGATACGATCACGTTCAAGAAAGAACGTT
ATATGGAAGTGACGAACAAGATTCAGAGTTATCTTGGAAATAATGGGTGG
AAAACTTCGAAGTCCGTATCTTTCGTCGCGGCTTCAGGGAGGGAAGGTAT
CAATCTGACTTCTTCCCCAAATAGGAACCACCCCTTGACCCAGTGGTACA
AGGGGAAGTGTCTGCTTGGAGAGCTTGAACAGCTGGAAACCCTCAGCATG
TCAACCATTCAAGAACACAGTCAGAAACCGACTCGTTTTGTCGTTTCGGA
CTTTTTTAGAAGTGCCTCCCTTGGGGGGGACGGTGCGGTCACTGGTCGCC
TCATTTGTGGTTCCATTGCTCAAAAAGATCGCCTTTCTCTTTGCCCTGGA
GGTTCAACAGTGTCTGTCAAAGCAGTAGAACTGGCATCGAAGGAAAGAGC
GCAAGTAGCTGTTGCAGGTGTGGATTGTCTGCCTGTATCACTTGGTCTGC
AGAATCTCACTGACGGTGTTCTGATATCTCCTGGCAACGTTCTGTGTGAC
CCCCGAAAACCGGTAACTGTAGCCACACAGTTTCGTGCCCAGTTGATCAC
AACATCGGCCAAAACAGTCCTACTACAAGGTACGTGCGGGGTATTACACA
TAGGGGGCGGAGCCGAAGCAGCCTCAATCACAAGATTGATCGAATTTGTG
CAAACAAAGAGAGGAATAAAGGGTGGTAAAAAGAAAATCCCACGTCGCTT
AATTAAAGGAGATTCGGCTATTGTAGAATTTAAGTGCGATCGTGGGGTAG
CAATGGAAAAGGCTGCAGATGTGAAAGGACTTGGGAGATTTGCTTTCCGG
CAAAATGGCCACACGCTTGCAGTCGGACTTGTACAAGAAATCATAGAAAA
TGCTGAAAATGTTGTGCAGGACAAAGCTCCAGATTCTGCTAACTAA